BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17890.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318548 jgi|Araly1|318548|fgenesh1_pm.C_scaffold_3001564           612    1e-174


> Ahg318548 jgi|Araly1|318548|fgenesh1_pm.C_scaffold_3001564
Length=471

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 428/473 (90%), Gaps = 13/473 (3%)
 Strand=Plus/Plus

Query  99   ATGAGGCGGCTACCACCGTGGATGCTCGGTGGCGCGTCAACCGGTGAAGCAGCTGCACGC  158
            ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  1    ATGAGGCGGTTACCACCGTGGATGCTCGGTGGCGCGTCCACCGGTGAAGCAGCTCCACGC  60

Query  159  AATGGTTCACAACCCGAAGCTCccaaaacaaaggctgaaaaacgaccaaaaagagtccaa  218
            || | |||| | ||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct  61   AACGCTTCAGAGCCCGAAGCTCCTAAAACAAAGTCTGAAAAACGACCAAGAAGAGTCCAA  120

Query  219  aaaaccaaagagaaagacttaaaTCTCAAGTCAGATGAACCTAAACGAGTTCCCAGGAAG  278
            ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||
Sbjct  121  AAACCCAAAGAGAAAGACTTAAATCTCAAATCAGAGGAACCTAAACGAGTTCGTAGGAAG  180

Query  279  ATTAGG-GAAGAAGCTAAGC---GT----A--GCCCGGAGGTGATTCAATCAGTGAC-TG  327
            | | || |||||||||||||   ||    |  |||||||| ||||||| |||||||| ||
Sbjct  181  A-TCGGAGAAGAAGCTAAGCGTAGTAGCAATGGCCCGGAGATGATTCAGTCAGTGACTTG  239

Query  328  TTCCTGAAGATGATGATCTCACAGTTGATGACTTATTAAGCTTTGCTAATGAGTATGTCC  387
             ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  240  -TCCAGAAGATGATGATCTCACAGTTGATGACTTATTAAGCTTTGCTCATGAGTATGTCC  298

Query  388  AACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTGTCAGTGTCTGAAACTA  447
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  299  AACGTGATGAGGAAGAAACAAGAAAGGAGCGTGAAAGAAGCTTGTCAATGTCTGAAACTA  358

Query  448  CGCTAGTTCTCGATGAAACCAATATGACTACATCATCTCAAGGAGGAACCAAAGATTCAA  507
            |||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||| |||
Sbjct  359  CGCTAGTTCTGGATGAATCCAATACGACAACATCATCTCAAGGAGGAACCAAAGATCCAA  418

Query  508  CAGCAGAAGACATGTTACAATTGCTAATGGGTCCTTTTTACAAGAAACGTTAG  560
            |||| || || |||||| ||||||||||||||||||||| |||||||||||||
Sbjct  419  CAGCCGATGAAATGTTAGAATTGCTAATGGGTCCTTTTTTCAAGAAACGTTAG  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5