BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17900.1
Length=3061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929657 jgi|Araly1|929657|scaffold_302114.1 4229 0.0
> Ahg929657 jgi|Araly1|929657|scaffold_302114.1
Length=2554
Score = 4229 bits (2290), Expect = 0.0
Identities = 2473/2562 (97%), Gaps = 10/2562 (0%)
Strand=Plus/Plus
Query 209 CAGTTTTTGGGGGTTTTGAGGAATGAATTTCTTGCTTCGATCTGCTTCTTCCGCTACTCA 268
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAGTTTTT--GGGTTTTGAGGAATGAATTTCTTGCTTCGATCTGCTTCTTCCGCTACTCA 58
Query 269 TCGGCCTCCGGTGATCGAACCACCAGCTACGCCGCCTCAACCTCCCCCTGAAACAGCGAA 328
|||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 59 TCGGCCTCCGGTGAGCGAACCACCAGCTACTCCCCCTCAACCTCCGCCTGAAACAGCCAA 118
Query 329 GCCCGGAGTTACTTTGGAAGGGCTGATTGCTGAAGAG-CATTTCCCACAATATCCATCAG 387
||||||||||||||||||||||||||| ||||||||| | |||||| |||||||| ||||
Sbjct 119 GCCCGGAGTTACTTTGGAAGGGCTGATAGCTGAAGAGTC-TTTCCCTCAATATCCGTCAG 177
Query 388 TAGATGAAGATCTCGATCGTGTGGGTGATGGATCTGGAGACCTTGATGGTAATGGAGAGT 447
|||| ||||||||||||||| ||| | | ||||| ||||| |||||||| ||||||||
Sbjct 178 TAGAAGAAGATCTCGATCGTCTGGCTAACGGATCCAGAGACGATGATGGTAGTGGAGAGT 237
Query 448 CAAATGCTAAGTCTGGTGGCTCTGGTATGGAGAGATTCTCTGATGTGTCTGAGGAACAAG 507
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 238 CAAATGCTAAGTCTGGTGGCTCTGGTATGGACAGATTCTCAGATGTGTCTGAGGAAGAAG 297
Query 508 GATGGATCGCCATTCCATACAAGGAGATCCCTGATAACTGGTCTGAGTCAGTTGATATTC 567
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 298 GATGGATCGCCATTCCATATAAGGAGATCCCGGATAACTGGTCTGAGTCTGTTGATATTC 357
Query 568 ATTCTTTACGGTCGTTGGATCGTTCCTTTGTTTTTCCTGGGGAGCAGATTCAAATCCTTG 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATTCTTTACGGTCGCTGGATCGTTCCTTTGTTTTTCCTGGGGAGCAGATTCAAATCCTTG 417
Query 628 CATGCTTATCTGAGAGTAAAGGAGACACAGAGATTATTACCCCTTTTAAGGTTGCTGAGG 687
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 CATGCTTATCTGAGAGTAAAGGAGACACAGAGTTTATTACCCCTTTTAAGGTTGCTGAGG 477
Query 688 TAATGAGCAGAACTGGACAAAGAAAGGTCTCTGACAAACAAAATGGAGATATGTCTGATG 747
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 478 TAATGAGCAGAACTGGACAGAGAAAGGTCTCTGACAAACAAAATGGGGATATGTCTGATG 537
Query 748 GGGCGAGTACGCCATCAGGGGATGGAGAAATGAGTCCTGATGCTCAATTTGCTACTCAGA 807
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGGCGAGTACACCATCAGGGGATGGAGAAATGAGTCCTGATGCTCAATTTGCTACTCAGA 597
Query 808 ATGGTGACAGTCCTTGTAAAGAGAGTTTGGATTCACAAAAAGACTTATCTGATGGTGAAT 867
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 ATGGTGACAGTCCTGGTAAAGAGAGTTTGGATTCACAAAAGGACTTATCTGATGGTGAAT 657
Query 868 CAATCTTGAGGATGGAAGATCATAAGAGACGAACAGAAGATTTGCTTTCCAGGTTTCAGA 927
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 CAATCTTGAGGATGGAAGATCATAAGAGACGAACAGAAGACTTGCTTTCCAGGTTTCAGA 717
Query 928 AGTCTCATTTCTTTGTTAGGATTGCAGAGTCTGGTGAGCCACTTTGGTCAAAGAAAAGTT 987
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 AGTCTCATTTCTTTGTTAGGATTGCAGAGTCTGGTGAGCCTCTTTGGTCAAAGAAAAGTT 777
Query 988 CTCTGGTCGCAGATACAGAGATGGATGAAGAGAGGAAAAGAACAAAAAGTAGACCTTGTG 1047
||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 778 CTCTGGTCGCAGATACAGAGATGGATGAAAAGAGGAAAAGCGCGAAAAGTAGACCTTGTG 837
Query 1048 TCAGTGCTTTTGTAGATAGAGGAGACTTCGATCCTAATGTTTCTGGAGGTGTAGCTAGAA 1107
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 TTAGTGCTTTTGTAGATAGAGGAGACTTCGATCCTAATGTTGCTGGAGGTGTAGCTAGAA 897
Query 1108 GTAAGGCAAAATGCTGTGCCTTACCAAATGGAGATATAGTGGTCTCTTTACAAGTTTATA 1167
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 898 GTAAGGCAAAATGCTGTGCCCTACCCAATGGAGATATAGTGGTCTCTTTACAAGTTTATA 957
Query 1168 TTGTCGACTGTCCCAAAGAACCCATCATAGAGATACTGCAGTTTGAGAAGCATCAGGACC 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTGTCGACTGTCCCAAAGAACCCATCATAGAGATACTGCAGTTTGAGAAGCATCAGGACA 1017
Query 1228 AGGACCAAAATCCTGAGAACGATAAGGATCCATATGGGAATCTTTTAAAGTGGTTGATAC 1287
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1018 AGGACCAAAATTCTGAGAACGATAAGGATCCATATGGGAATCTTTTAAAGTGGTTAATAC 1077
Query 1288 CGCTGGATAACACTATTTCTCAGCAACCCCGTTCTTTACCACCTCCTATAACCCCTAGCC 1347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1078 CGCTGGATAACACTATTTCTCAGCAACCCCGTTCTTTACCACCTCCTATAACCCCTAGTC 1137
Query 1348 CAAGTATCAGTAGCACTGCACACAAGCCAGCGATATCTTCTACCTCAGGCTCTCAACTCT 1407
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1138 CAGGTATCAGCAGCACTGCACACAAGCCAGCGATCTCTTCTACCTCAGGCTCTCAACTCT 1197
Query 1408 TCTCATTTGGTCATTTTAGAAGCTATTCAATGTCCGCTCTGCCTCCAAACACTGCACCAG 1467
||||||| || |||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1198 TCTCATTCGGCCATTTTAGAAGCTACTCCATGTCCGCTCTACCTCCAAACACTGCACCAG 1257
Query 1468 TTACTGGACCCATAAAAACACAGAGCTCTAAACCATCATTTGATATTGAAGATTGGGACA 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTACTGGACCCATAAAAACACAGAGCTCTAAACCATCATTTGATATTGAAGATTGGGACA 1317
Query 1528 GTTACTCAGGCCAAACGGTACGAAACGGTCAGAAGTCTGGGACTGAAGAGCTCTTGTCTT 1587
| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1318 GCTACTCAGGTCAAACGGTGCGAAATGGTCAGAAGTCTGGGACTGAAGAGCTCTTATCTT 1377
Query 1588 TTCGGGGTGTCGCATTGGAGCGGGATAGGTTTTCTGTTCGTTGTGGACTCGAAGGCATCT 1647
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTCGGGGTGTTGCATTGGAGCGGGATAGGTTTTCTGTTCGTTGTGGACTCGAAGGCATCT 1437
Query 1648 GCATCCCTGGTAGAAGGTGGAGGAGGAAACTCGAGATCATTCAACCTATTGAGATAAACT 1707
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1438 GCATCCCTGGTAGAAGGTGGAGGAGGAAACTAGAGATCATTCAACCTATTGAGATAAACT 1497
Query 1708 CTTTTGCAGCTGACTGCAATACAGATGATCTTCTCTGCGTTCAGATAAAGAATGTGGCTC 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTTTTGCAGCTGACTGCAATACAGATGATCTTCTCTGCGTTCAGATAAAGAATGTGGCTC 1557
Query 1768 CTACCCATGCTCCAGATATTGTAATATACATAGACGCCATAACAATTGTTTTTGAAGAAG 1827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1558 CTACCCATGCTCCAGATATTGTAATATACATAGACGCCATAACAATTGTTTTTGAAGAGG 1617
Query 1828 CAGGGAAAAATGCTTCCCCTTCTTCAGTACCAATAGCATGCATTGAAGCTGGAAACGAGC 1887
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CAGGAAAAAATGCTTCCCCTTCTTCAGTACCAATAGCATGCATTGAAGCTGGAAACGAGC 1677
Query 1888 ACAGTTTGCCAAATTTAACTCTCAGGAAAGGTGAGGAGCACTCATTCATCGTAAAGCCTG 1947
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1678 ACAGTTTGCCAAATTTAACTCTCAGGAAAGGTGAGGAGCACTCATTCATCGTGAAGCCTG 1737
Query 1948 CGTTTTCTGTTGGGAGTAATCTGAAGCCCTCTGCTGCACGAAATAAACTCAAATCATCGA 2007
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1738 CGTTTTCTGTTGGGAGTAATCTGAAGCCCTCTGCTGCACGAAACAAACTCAAATCATCGA 1797
Query 2008 GTTTGTCTCTTCCAACTGTAAATTTTGAAAGAAAAGGGAGCGGTTTAAGTGGTGATCAGT 2067
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GTTTGTCTCTTCCAGCTGTAAATTTTGAAAGAAAAGGGAGCGGTTTAAGTGGTGATCAGT 1857
Query 2068 ATGCGGTTATGGTGTCATGTCGGTGCAACTACACAGAATCAAGACTGTTTTTCAAACAAC 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ATGCGGTTATGGTGTCATGTCGGTGCAACTACACAGAATCAAGACTGTTTTTCAAACAAC 1917
Query 2128 GGACAAAATGGAGACCACGAGTTTCGAGAGACCTGATGATCTCTGTTGCGTCTGAAATGT 2187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 GGACAAAATGGAGACCACGAGTTTCGAGAGACCTGATGATCTCTGTTGCGTCTGAAATGT 1977
Query 2188 CAGGAGAGCCTTGTGGTCCCCATGGGAGAGCCTCTCAACTACCCGTTCAGATTTTAACTC 2247
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1978 CAGGAGAGCCTTGTGGTCCCCATGGTAGAGCCTCTCAACTACCCGTTCAGATTTTAACTC 2037
Query 2248 TTCAGGCATCGAATTTGACTTCAGAAGATCTATCTTTGACCGTTCTCGCTCCTGCATCCT 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 TTCAGGCATCGAATTTGACTTCAGAAGATCTATCTTTGACCGTTCTCGCTCCTGCATCCT 2097
Query 2308 TCACATCACCTCCAACTGTAGTGTCCCTAAACTCTACGCCTACGACCCCTATAAGCCCAT 2367
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 TCACATCACCTCCGACTGTGGTGTCCCTAAACTCTACGCCTACGACCCCTATAAGCCCAT 2157
Query 2368 TCCTAGGATTCTCTGATTTCACCGAGAGAGTACAAAACGAGAAACGCAACACTAC-AGTG 2426
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| | ||
Sbjct 2158 TCCTAGGATTCTCTGAGTTCACCGAGAGGGTACAAAATGAGAAACGCAACACTACGA-TG 2216
Query 2427 CGTAAACAGCAATCGTTACCCCCAATTCCACTGGAGACAAGGACAGAGAACAACACAAAT 2486
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 2217 CGTAAACATCAATCGTTACCCCCAATTCCACTGGAGACAAGGACAGAGAACA-CA-AA-T 2273
Query 2487 GGTGAATCTTCCAATCCTTCAGATGTTGTTCCAAAGAGCGGCTTAGGTTGCACACATCTC 2546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 GGTGAATCTTCCAATCCTTCAGATGTTGTTCCAAAGAGCGGCTTAGGTTGCACACATCTC 2333
Query 2547 TGGCTACAAAGTCGAGTTCCCTTAGGATGCGTTCCTTCGAAATCTACGGCGACAATCAAG 2606
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2334 TGGCTACAAAGTCGAGTTCCCTTGGGATGCGTTCCTTCGAAATCTACGGCGACGATCAAG 2393
Query 2607 CTAGAGCTACTCCCTTTGACTGATGGCATAATCACTCTGGATACTCTTCAGATCCATGCA 2666
||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2394 CTAGAGCTACTACCTTTGACTGATGGCATAATCACTCTTGATACTCTCCAGATCCATGCC 2453
Query 2667 AAGGAGAAAGGTCGTAGATACATTCCAGAGCAGTCACTGAAGATAAACGCAACTTCAAGC 2726
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 AAGGAAAAAGGTCGTAGATACATTCCAGAGCAGTCACTGAAGATAAACGCAACTTCAAGC 2513
Query 2727 ATTTCCTCTGGGATTTTCTAGTCTTTTACCCAATGCCACTTT 2768
|||||||||||||||||||||||||| |||||||||||||||
Sbjct 2514 ATTTCCTCTGGGATTTTCTAGTCTTT-ACCCAATGCCACTTT 2554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115603893575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5