BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17910.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479277 jgi|Araly1|479277|fgenesh2_kg.3__1978__AT3G17910.1 2109 0.0
> Ahg479277 jgi|Araly1|479277|fgenesh2_kg.3__1978__AT3G17910.1
Length=1366
Score = 2109 bits (1142), Expect = 0.0
Identities = 1295/1370 (95%), Gaps = 5/1370 (0%)
Strand=Plus/Plus
Query 1 GTGGAGGCAAAAACCCTTTACCTCCGGGATCAAAATCTTGGGGAGAGACGAAGATGGCGA 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 GTGGAGGCAAAAACCCTTTACCTCCGGGATCAAAATCTT--GGAGAGACGAAGATGGCGA 58
Query 61 CCTCGCTTTCCAAAATCCTAACGAGATCGAACACTAAGAGATACTGGTGCTCTACTACAA 120
| ||| |||||||||| ||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 59 CATCGTTTTCCAAAATACTAACGAGATCGAACGCTCAGAGACACTGGTGCTCTACTACAA 118
Query 121 CAAGTATCTCTGCCTCTCCTTCTTTACCGAAACAATTCTGGTCAAGACACTTCTCTGCCG 180
| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 119 CCAGTATATCTGCATCTCCTTCTATACCGAAACAATTCTGGTCAAGACACTTCTCCGCCG 178
Query 181 TCGCTGACTCTTCCTCCTCTAGCTCCGCCGCTCTTGGAAGCCAATCGAGTTCTTCTGCTC 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCGCTGACTCTTCCTCATCTAGCTCCGCCGCTCTTGGAAGCCAATCGAGTTCTTCTGCTC 238
Query 241 CACCTCAAGAGAACAAACGAGGGTCTAAGTGGTCACAATTGTTGTTGTTCTTGCCTGGAG 300
|||| |||||||| |||||||| || ||||||||||||||| || | |||||||||||||
Sbjct 239 CACCACAAGAGAATAAACGAGGTTCAAAGTGGTCACAATTGCTGCTATTCTTGCCTGGAG 298
Query 301 CGATTACCTTTGGTCTCGGGTCATGGCAGATCGTCAGGAGAGAGGAAAAGTTCAAAACAC 360
|||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 299 CGATTACCTTCGGCCTCGGGTCATGGCAGATTGTCAGAAGAGAGGAAAAGTTCAAAACAC 358
Query 361 TGGAGTATCAACAGCAACGGTTGAACATGGAACCAATAAAGCTAAATATAGACCATCCTC 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 TGGAGTATCAACAGCAACGGTTGAACATGGAACCAATGAAGCTAAATATAGACCATCCTC 418
Query 421 TTGATAAGAATCTCAATGCTTTAGAATTTAGACGGGTTAGTTGCAAGGGTGTCTTTGACG 480
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTGATAAGAATCTTGATGCATTAGAATTTAGACGGGTTAGTTGCAAGGGTGTCTTTGACG 478
Query 481 AGCAAAGGTCTATCTATTTGGGTCCACGGTCTAGGTCCATATCGGGAATTACTGAAAATG 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 AGCAAAGGTCTATCTATTTGGGTCCACGGTCTAGGTCCATATCGGGAGTTACTGAAAATG 538
Query 541 GATTCTTTGTCATCACACCTCTAATGCCAATCCCCGGTGACCTGGATAGCATGCAATCGC 600
|||||| | ||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 539 GATTCTATCTCATCACACCTCTAATGCCAATCCCTGGTGACCTGGATAGCATACAGTCGC 598
Query 601 CTATTCTGGTGAATCGTGGATGGGTTCCTCGAAGTTGGAGAGAGAAGTCACAAGAATCCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 CTATTCTGGTGAATCGTGGATGGGTTCCTCGAAGTTGGAGAGAGAAGTCACCAGAATCCA 658
Query 661 CAGAGGCTGAGTTCATTGCAAACCAGTCAACAAAAGCTAAATCACCGTCCAATGAACCAA 720
|||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 659 CAGAGGCTGACTTCGTTGCAAACCAGTCAACAAAAGCTAAATCACCCTCCGATGAACCAA 718
Query 721 AGTCCTGGTGGAAATTTTGGTCTAAGACGCCAGTGATTACCAAGGAACATATATCTGCGG 780
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct 719 AGTCCTGGTGGAAATTTTGGTCTAAGACGCCAGTTATTACCAAGGAACATGTATCCGTGG 778
Query 781 TTAAGCCTGTAGAAGTAGTTGGCGTAATCAGGGGAGGGGAGAACCCGAGCATATTTGTTC 840
|||||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||
Sbjct 779 TTAAGCCTGTAGAAGTTGTTGGTGTGATCAGGGGAGGAGAGAACCCAAGCATATTTGTTC 838
Query 841 CATCCAATGATCCAAGTACCGGGCAGTGGTTCTATGTAGATGTTCCTGCGATGGCTCGAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CATCCAATGATCCAAGTACCGGGCAGTGGTTCTATGTAGATGTTCCTGCGATGGCTCGAG 898
Query 901 CCGTTGGCCTTCCTGAAAACACAATCTACGTAGAGGACGTCCATGAACATGTAGATCGGA 960
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 CCGTTGGCCTTCCTGAAAATACAGTCTACGTAGAGGACGTCCATGAACATGTAGATCGGA 958
Query 961 GTAGACCGTATCCTGTTCCGAAGGACATCAACACCTTGATCCGTAGTAAAGTCATGCCAC 1020
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTAGACCGTATCCTGTTCCCAAGGACATCAACACCTTGATCCGTAGTAAAGTCATGCCAC 1018
Query 1021 AGGACCATCTGAACTACTCAATAACATGGTATTCTCTCTCGGCGGCTGTCACTTTCATGG 1080
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGGACCATCTCAACTACTCAATAACATGGTATTCTCTCTCGGCGGCTGTCACTTTCATGG 1078
Query 1081 CATACAAGAGACTGAAGGCAAAGCCTGTCCGCAGATAAGCACTCGCTGATCAAAATCAAA 1140
| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 1079 CTTACAAGAGACTGAAGGCAAAGCCTGCCCGCAGATAAGCTCTCGCTGATCAAAGTCAAA 1138
Query 1141 TCGTATTCTTTTTGTCACTTGTCTGCTGAAGTAATAATTGCAGTGGATAATTGGTTTTAG 1200
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1139 TCTTATTCTTTTTGTCACTTGTCTGCTGAAGTAATAATTGCAATGGATAACGGGTTTTAG 1198
Query 1201 GTTATAAACTTTCAT-AAGAAAAAGGGACACAATTAAATCCTTAATGTTGTGGTAACTTA 1259
||| ||||| ||||| || ||||||| ||||||| ||||||||| ||||||| ||||||
Sbjct 1199 GTT-TAAACATTCATTAAAAAAAAGG-ACACAATGAAATCCTTACTGTTGTGATAACTTC 1256
Query 1260 ATAGAAATTTGTAGTTTTCTTTTTCTACGATGGAAGGAAAGTTCGAAATGGAAGCCATTT 1319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 ATAGAAATTTGTAGTTTTCTTTTTCTACGATGGAAGGAAAGTTCGAACTGGAAGCCATTT 1316
Query 1320 GTAGGTAAAGAAGGTTGCAACGAATGCTTGTAATCACCATTGTTCTTTCT 1369
|||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1317 GTAGGTAAAGAAGGTTGCAATGAATGCTTGTAGTCACCATTGTTCTTTCT 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5