BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17920.1
Length=3033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929659 jgi|Araly1|929659|scaffold_302116.1 4900 0.0
Ahg923189 jgi|Araly1|923189|scaffold_104470.1 1212 0.0
Ahg951070 jgi|Araly1|951070|scaffold_802957.1 104 4e-21
> Ahg929659 jgi|Araly1|929659|scaffold_302116.1
Length=3070
Score = 4900 bits (2653), Expect = 0.0
Identities = 2910/3036 (96%), Gaps = 9/3036 (0%)
Strand=Plus/Plus
Query 1 ATGGCCATCGTTACCGGAGATCGATATCTAGAGAATCTCCAGAGGTTCCTTGACGAGAAA 60
||||| |||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||
Sbjct 21 ATGGCAATCGTTACCGGAGATCGATATCTAGAGACTCTCCAGAAGTTTCTTGAAGAGAAA 80
Query 61 GCTGATTTGCTTATTGATGGTACCGATGTCCTCAAGCTTAATCCCGCGGGTCTTCACTAT 120
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 81 GCTGATTTGCTTATTGATGGTACCGATGTTCTCAAGCTTAATCCCGCAGGCCTTCACTAT 140
Query 121 GTTCATCTCCGTCTCGAATCTCTTCGTGAACTTGAGCTTATGCTCTCCGGAGCTCCCGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GTTCATCTCCGTCTCGAATCTCTTCGTGAACTTGAGCTTATGCTCTCCGGAGCTCCCGTT 200
Query 181 GACTATCTCCGTGCCTACGTCTCCGACATTGGCGATTTCCGTGCCCTTGAGCAGCTCCGG 240
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 201 GACTATCTCCGCGCCTACGTCTCCGACATTGGCGATTTTCGTGCCCTTGAGCAGCTCCGA 260
Query 241 CGTATTCTCCGTCTCCTTCCTTCTCTTAAGGTCGTTTCATCGCTTCCTTCACCGGCTCGT 300
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 261 CGTATTCTCCGCCTCCTTCCTTCTCTCAAGGTCGTTTCGTCGCTTCCTTCACCGGCTCGT 320
Query 301 GATCCTACGCCGCTCTCTCTTCTTCCTTTTTCTAAGCTTAAGGTCTTGGAACTCCGTGGC 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GATCCTACGCCGCTATCTCTTCTTCCTTTTTCTAAGCTTAAGGTCTTGGAACTCCGTGGG 380
Query 361 TGTGATTTGTCTACTTCTTCTGCTAAGGGATTGCTAGAACTCAGGCACACTTTGGAGAAG 420
||||||||||||||||||||||| || || ||||| |||||||||||||| |||||||||
Sbjct 381 TGTGATTTGTCTACTTCTTCTGCCAAAGGCTTGCTCGAACTCAGGCACACCTTGGAGAAG 440
Query 421 CTGATCTGCCATAATTCCACTGATGCG-TTGCGGCATGTGTTTGCTAGTAGAATCGCTGA 479
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 441 TTGATCTGCCATAATTCCACTGATGCGCTT-CGGCATGTGTTTGCTAGTAGAATCGCCGA 499
Query 480 GATAAAGGATTCACCACAGTGGAATAAGTTGGCTTTCATTTCTTGTGCTTGTAACCGTCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 500 GATAAAGGATTCACCACAGTGGAATAAGTTGGCTTTCATTTCTTGTGCTTGCAACCGTCT 559
Query 540 TGTGCTCATGGATGAGTCGTTGCAACTTCTTCCAGCTGTTGAGTCGCTTGATCTGAGCCG 599
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 560 TGTTCTCATGGATGAGTCGTTGCAACTTCTTCCAGCTGTTGAGTCCCTTGATCTTAGCCG 619
Query 600 AAACAAGTTTGCAAAGGTGGATAATCTTCGGAGATGTAACAAGTTGAAACACCTTGATCT 659
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 620 AAACAAGTTTGCAAAGGTAGATAATCTTCGGAGATGTACCAAGTTGAAACACCTTGATCT 679
Query 660 AGGTTTCAATCAACTAAGAAAAATCTCTCACCTGAGCGAGGTATCCTGTCACCTTGTTAA 719
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GGGTTTCAATCAACTTAGAAAAATCTCTCACCTGAGCGAGGTATCCTGTCACCTTGTTAA 739
Query 720 ACTTGTTTTGAGGAATAACGCGCTAACTACATTGCGTGGGATTGAGAATTTGAAGTCACT 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ACTTGTTTTGAGGAACAACGCGCTAACTACATTGCGTGGGATTGAGAATTTGAAGTCACT 799
Query 780 TGAAGGCCTGGATGTTTCCTTCAATCTTATTTCCGACTTCTCGGAACTGGAGTTCCTCGG 839
||||||||| ||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 800 TGAAGGCCTTGATGTTTCCTTCAATCTTATTTCCGACTTTTCAGAACTGGAATTTCTCGG 859
Query 840 GAGTCTTTCATTCTTGACAGACCTCTGGTTGGAAGGAAATCCAATTTGTTGTGCTCGATG 899
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 860 GAGTCTTTCATTCTTGACAGACCTGTGGTTGGAAGGAAATCCAATTTGCTGTGCTCGATG 919
Query 900 GTACAGGGCACATGTCCTCAGCTACGTTTAC-CTTCCAAATGATTTGAAACTTGATGGCA 958
||| || || ||||||||||||||||||| | ||||||||||||||||| || |||||||
Sbjct 920 GTATAGAGCTCATGTCCTCAGCTACGTTT-CTCTTCCAAATGATTTGAAGCTAGATGGCA 978
Query 959 AACATATTGGGAATAGAGAATTTTGGAAGAGGCAGGTTGTTGTTACCCGTAGGAAAAGTC 1018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 979 AACATATTGGGAATAGAGAATTTTGGAAGAGGCAGGTAGTTGTTACCCGTAGGAAAAGTC 1038
Query 1019 AGCCTGCCAGTTACGGGTTCTACTCTCCGGCTAGAGACGAAGCTGATGACGAAGGAAGCT 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 AGCCTGCCAGTTATGGGTTCTACTCTCCGGCTAGAGACGAAGCTGATGACGAAGGAAGCT 1098
Query 1079 TTACTAGAAAAAAGACGAAAATCTACCGGCTCGCGTCTATTGATAGTGAGGAAGAGAGCA 1138
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1099 GTAATAGAAAAAAGACGAAAATCTACCGGCTCCCGTCTATTGATAGTGAGGAAGAGAGCA 1158
Query 1139 CCTATGTGAATTCTGATCAAGAGTCTGCTTCATGTGAACCCGAGACTCAAAGCAAAGAGG 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1159 CCTATGTGAATTCTGATCAAGAGTCTGCTTCATGTGAACCCGAGACTCAAAGCAAAGAAG 1218
Query 1199 AGAATATCAAGTCTGATCATGAAGCTGATGTCTTTGGTCTAATATGTAAAGTTGAACAGT 1258
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1219 AGAATATCAAGTCTGATCATGAAGCTGATGTCTTTGGTCTAATAAGTAAAGTTGAACAAT 1278
Query 1259 TGAAGAAAGAGCGTTCTGTTCTTTGGCTTCGGGAATTTAAGGAGTGGATAGATCATCCAT 1318
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1279 TGAAGAAAGAGCGTTCTGTTCTCTGGCTTCGGGAATTTAAGGAGTGGATAGATCATCCAT 1338
Query 1319 CCGAGGATTTTGTGGATGTCAGCAAAAATGGGAGCAGTACTGATTCAGAGCAGAAGTACT 1378
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1339 CAGAGGATTTTGTGGATGTCAGCAAAAATGGGAGCAGTACTGATTCAGAGCAAAAGTACT 1398
Query 1379 ACATGAAGAATAGAAATGGCCCAAAACATCATGGTGAAACAATGAGATATACACCAGGGC 1438
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1399 ACACGAAGAATAGAAATGGCCCAAAACATCATGGTGAAACAATGAGATATGCACCAGGGC 1458
Query 1439 CTCTACCAAGTTTCCAAATTACAGATCTAAATCAGAAGCATCAAGCATTTTTTCTTGATG 1498
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 CTCTACCAGGTTTCCAAATTACAGATCTAAATCAGAAGCATCAAGCATTTTTTCTTGATG 1518
Query 1499 GGAAGCCAGATGAAAATGGAAACATGTCAACTTTGGATGCTAGTCAGGATATGACAGGAT 1558
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1519 GGAAGCCAGATGAAAATGGAAACATGTCAACTTTGGATGCTACTCAGGTTATGACAGGAT 1578
Query 1559 CATTTTCACCTTCATCACCCCCTCATTATCAAAAGGATGTCTTACACCGGCGTCAGAACC 1618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 CATTTTCACCCTCATCACCCCCTCATTATCAAAAGGATGTCTTACACCGGCGTCAGAACC 1638
Query 1619 TGGTGGAAGAAATCTTACAGATATCAGCAGATTCTTATTCAGTGGCTTCGTCTGATAGTA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TGGTGGAAGAAATCTTACAGATATCAGCAGATTCTTATTCAGTGGCTTCGTCTGATAGTA 1698
Query 1679 GCTGCAGTGAAAATGAAAATTATGATTCTGAGCAATCAAATCCTGAACAGGATACGTTGA 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1699 GCTGCAGTGAAAATGAAAATTATGATTCTGAGCAATCAAATCCTGAACAGGATATGTTGA 1758
Query 1739 AGGATCATCTTAGTGGCAATAGAGGAGAAGACACAAGCTTGCTTGACTCTCAACCAGAGA 1798
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 AGGATCATCTTAGTGGGAATAGAGGAGAAGACACAAGCTTGCTTGACTCTCAACCAGAGA 1818
Query 1799 AGAGTAGCATCATAAAGTCTTGGAAGATAGAGGATTCGTTCAAAGCGAAGACCACTAATT 1858
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1819 AGAGTAGCATCATAAAGTCTTGGAGGATAGAGGATTCGTTCAAAGCAAAGACCACTAATT 1878
Query 1859 TTCTTTCTGGGCTACATAAAAGTGAGCTTGCTTCTGGTGTTAACCAGATTTACCGTTGGT 1918
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TTCTTTCTGGGCTACATAATAGTGAGCTTGCTTCTGGTGTTAACCAGATTTACCGTTGGT 1938
Query 1919 TTGACAAAAAGCAAAGCAAGAGGAAGCCTaaaaaaaGAAATGTTTCTCCACTGGAGGAGT 1978
||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1939 TTGACAAAAGGAAAAGCAAGAGGAAGCCTAAAAAAAGAGTTATTTCTCCACTGGAGGAGA 1998
Query 1979 ATAGTTTCATAAAGAAAGGAGAAACATCTCATAGAAGTGATGCAGATATCATTGATTCTT 2038
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ATAGTTTCATAAATAATGGAGAAACATCTCATAGAAGTGATGCAGATATCATTGATTCTT 2058
Query 2039 GTGAAGATGAATATATTTCTGATCATTTTCAAGAAGGTTCCTTGACTACAGGTTGTAATA 2098
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2059 GTGAAGATGAATATATTTCTGATCATTTTCAAGAAGGTTCCTTGACTACGGGTTGTAATA 2118
Query 2099 GTAAGAGAAGTACTAGATTTTTGGAAACTGAAAAATCCCTTGAAGGAATGGGTGGTCTAG 2158
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2119 GTAAGAGAAGTACTAGATTTTTGGAAACTGAAAAATCCCTTGAAGGAATGGATGGTCTAG 2178
Query 2159 TGGAGGAATTTTTTACAACGACACTGTCAGATTCCAGCAATGATGAGACTTGTAGGATTT 2218
|||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2179 TGGAAGAATTTTTTACAACGACACTGTCAGATTCCAGCATTAATGAGACTTGTAGGATTT 2238
Query 2219 ACGTTAGTTGTGATTGCATACTACAGCAAGAATCCACCTATAAGCAACGGGAAGTAGTGT 2278
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2239 ACGTTAGTTGTGATTGCATAATACAGCAAGAATCCACCTACAAGCAACGGGAAGTAGTGT 2298
Query 2279 TGCTGCTGAGTAGCCAAGAAAAACTGTATGTGCTGCTCGTGGGTGTCTCCACTGATTTAC 2338
||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||
Sbjct 2299 TGCTGCTGAGTAGCCAAGAAATACTGTATGTGCTGCTCGTTGGTGTCTCCAGTGATTCAC 2358
Query 2339 AAGAGAGCAGCTTAAGTTTATTGTGTTCGCATACAATCGGGGATATACGAGATGTCTCAG 2398
||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 2359 AAGAGAGCAATTTAAGTTTATTGTGTTCGCATACAATCGGTGATATACAAGACGTCTCAG 2418
Query 2399 TTGGTCTAGGACTTCAGGTTGTGAGGCTACGTTTTAGGGAGGATGCAGAGTACATTTTCA 2458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2419 TTGGTCTAGGACTTCAGGTTGTGAGGCTACGCTTTAGGGAGGATGCAGAGTACATTTTCA 2478
Query 2459 TGACGGCGAGCATTGAAAAAACAACAGTTTTACTCAATATCATAAAATTCTTGGATTATC 2518
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2479 TAACCGCGAGCATTGAAAAAACAACAGTTTTACTCAATATCATAAAATTATTGGATTCTC 2538
Query 2519 AGGTTACAGAATCAAAATTTTCTTTGAAGAGTTTGGAGAATGTTCAAGTGGAATTGTTTG 2578
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2539 AGGTTACAGAATCAAAATATTCTTTGAAGAGTTTGGAGAATGTTCAAGTGGAATTGTTTG 2598
Query 2579 AGAAAGAAATATGTAGTGGTTTGAAGCTGAGTATATTCCAGTATATTGTTCTCCATTTTC 2638
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2599 AGAAAGAAATATGTAGTGGTTTGAAGCTGAGTATATTCCAGTATAATGTTCTCCATTTTC 2658
Query 2639 AGAGCAGCACTTTTGGAGAAGTGTCATGGCTTCCACGGTCACTCTTTGTGGCGGGTGGAC 2698
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2659 AGAGCAGCACTCTTGGAGAAGTGTCATGGCTTCCACGGTCACTCTTTGTGGCGGGTGGAC 2718
Query 2699 ATCTTTTCATATGCAATGAAGACTTCAGGCAACTGAGTTTTCTGCCAACAGATGATGCTT 2758
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2719 ATCTTTTCATATGCAATGAAGACTTCAGGCAGCTGAGTTTTCTGCCAACAGATG---CTT 2775
Query 2759 CTTCATCCCCATATTTCTCACTTGACTCAAGCTGCTCCATCTCCGACATATTTGAGATGG 2818
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2776 CTTCATCCCCATATTTCTCACTTGCCTCAAGCTGCTCCATCTCCGACATATTTGAGATGG 2835
Query 2819 TTGTTGAATCAAGAGGAAGCTCGTGCTTGTCACTGAAGGTCAAGCAGAAGGATTCCACAT 2878
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 2836 TTGTTGAATCACGAGGAAGCTCATGCTTGTCACTGAAGATCAAGCAGAAGGATTCCACAT 2895
Query 2879 TTCAAAGCAGCCAAAAGAGGACAGTGAATTCAGTAACATGGAAGCTCAAGTTACTCAGCC 2938
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2896 ATCAAAGCAAACAAAAGAGGACAGTGAATGCAGTAACATGGAAGCTCAAGTTACTCAGCA 2955
Query 2939 -CTGAGTGTGTACCCAAATTTGTGGCTCTAGTAAATGGACTTCACCCAGATTCGACAGAA 2997
| |||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 2956 AC-GAGTGTGTACTGAAATTTGTGGCTCTAATCAATGGACTTCACCCAGAATCGACAGAA 3014
Query 2998 TTCCCATTGTTCGTAAGGCATTTGGGTGAGAGATGA 3033
| ||| ||| ||||||||||||||||||||| ||||
Sbjct 3015 TGCCCGTTGCTCGTAAGGCATTTGGGTGAGAAATGA 3050
> Ahg923189 jgi|Araly1|923189|scaffold_104470.1
Length=3245
Score = 1212 bits (656), Expect = 0.0
Identities = 1205/1466 (82%), Gaps = 53/1466 (4%)
Strand=Plus/Plus
Query 1 ATGGCCATCGTTACCGGAGATCGATATCTAGAGAATCTCCAGAGGTTCCTT-GACGA-GA 58
||||| || || ||||||||||||||| | ||||| || ||| ||| || || || |
Sbjct 22 ATGGCAATTGTCACCGGAGATCGATATGTTGAGAAGCTAGAGAAGTT-TTTAGAAGACG- 79
Query 59 AAGCTGA-TTTGCTTATTGATGGTACCGATG-TCCTCAAGCTTAATCCCGCGGGTCTTCA 116
||||||| | | ||| | || | ||| ||| | |||||||||||||| || ||||||||
Sbjct 80 AAGCTGAGTCT-CTTCTAGAAGAAACC-ATGATTCTCAAGCTTAATCCAGCTGGTCTTCA 137
Query 117 CTATGTTCATCTCCGTCTCGAATCTCTTCGTGAACTTGAGCTTATGCTCTCCGGAGCTCC 176
|||| |||||||||||||||| ||||| ||||||||||| | ||||||||||| |||||
Sbjct 138 CTATCTTCATCTCCGTCTCGAGTCTCTCCGTGAACTTGAACGCATGCTCTCCGGTGCTCC 197
Query 177 CGTTGACTATCTCCGTGCCTACGTCTCCGACATT-GGCGATTTCCGTGCCCTTGAGCAGC 235
||||| || ||||| || ||||| || ||| || || |||| ||| || || |||||||
Sbjct 198 TGTTGATTACCTCCGCGCTTACGTTTCTGAC-TTAGGAGATTACCGCGCACTCGAGCAGC 256
Query 236 TCCGGCGTATTCTCCGTCTCCTTC-CTTCTCTTAAGGTCGTTT-CATCGCTTCCTTCACC 293
|||| ||||||||||| ||| || | || ||||||||||||| || |||||||||| ||
Sbjct 257 TCCGTCGTATTCTCCGAATCC-TCACCTCACTTAAGGTCGTTTCCA-CGCTTCCTTCCCC 314
Query 294 GGCTCGTGATCCTACGCCGCTCTCTCTTCTTCCTTTTTCTAAGCTTAAGGTCTTGGAACT 353
||||||||||||||| |||||||||||| |||| ||| || ||||||||| ||||||||
Sbjct 315 GGCTCGTGATCCTACACCGCTCTCTCTTATTCCCTTTGGTAGGCTTAAGGTTTTGGAACT 374
Query 354 CCGTGGCTGTGATTTGTCTACTTCTTCTGCTAAGGGATTGCTAGAACTCAGGCACACTTT 413
||| ||||||||||||| |||||| | || || || ||||| || ||| | ||||||||
Sbjct 375 TCGTCGCTGTGATTTGTCCACTTCTCCGGCCAAAGGCTTGCTTGAGCTCCGTCACACTTT 434
Query 414 GGAGAAGCTGATCTGCCATAATTCCACTGATGCGT-TGCGGCATGTGTTTGCTAGTAGAA 472
||| || | ||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 435 GGAAAATATCATCTGCCATAATTCCACTGATGC-TCTGCGGCATGTGTTCGCTAGTAGAA 493
Query 473 TCGCTGAGATAAAGGATTCACCACAGTGGAATAAGTTGGCTTTCATTTCTTGTGCTTGTA 532
| |||||||||| | |||| || | |||||||||||||| |||| |||||||||||||
Sbjct 494 TTGCTGAGATAACGAATTCGCCGGAATGGAATAAGTTGGCGGTCATATCTTGTGCTTGTA 553
Query 533 ACCGTCTTGTGCTCATGGATGAGTCGTTGCAACTTCTTCCAGCTGTTGAGTCGCTTGATC 592
||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 554 ACCGTCTTGTGCTCATGGATGAGTCCTTGCAGCTTCTTCCAGCTGCTGAGTCGCTTGATC 613
Query 593 TGAGCCGAAACAAGTTTGC-AAAGGTGGATAATCTTCGGAGATGTAACAAGTTGAAACAC 651
|||| ||||||||||||| |||| ||||||||||||||||||| | ||| ||||| |||
Sbjct 614 TGAGTCGAAACAAGTTTGTGAAAG-TGGATAATCTTCGGAGATGCACCAAATTGAAGCAC 672
Query 652 CTTGATCTAGGTTTCAATCAACTAAGAAAAATCTCTCACCTGAG-CGAGGTATCCTGTCA 710
|||||||| ||||||||||| || |||| | ||||| || |||| | |||||||||||||
Sbjct 673 CTTGATCTCGGTTTCAATCATCTTAGAACAGTCTCTTACTTGAGTC-AGGTATCCTGTCA 731
Query 711 CCTTGTTAAACTTGTTTTGAGGAATAACGCGCTAACTACATTGCGTGGGATTGAGAATTT 770
||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 732 TCTTGTGAAACTTGTTTTGAGGAACAACGCTCTAACTACGTTGCGTGGGATTGAGAACTT 791
Query 771 GAAGTCACTTGAAGGCCTGGATGTTTCCTTCAATC-TTATTTCCGACTTCTCGGAACTGG 829
|||||||||||||||||| |||||||||| ||| | |||||||| |||| || ||| |||
Sbjct 792 GAAGTCACTTGAAGGCCTTGATGTTTCCTACAA-CATTATTTCCAACTTTTCAGAATTGG 850
Query 830 AGTTCCTCGGGAGTCTTTCATT-CTTGACAGACCTCTGGTTGGAAGGAAATCCAATTTGT 888
||||||| ||||||||||| | || || ||| | ||| |||||||||| ||| | ||
Sbjct 851 AGTTCCTTTGGAGTCTTTCAGTACT-GAAAGAATTGTGGCTGGAAGGAAACCCAGTGTGC 909
Query 889 TGTGCTCGATGGTACAGGGCACATGTCCTCAGCTACGTTTAC-CTTCCAAATGATTTGAA 947
|||||||||||||||||||| |||||| |||||||| || | |||||| |||| ||||
Sbjct 910 TGTGCTCGATGGTACAGGGCGCATGTCTTCAGCTACATTG-CTCTTCCAGATGAACTGAA 968
Query 948 ACTTGATGGCAAACATATTGGGAA-TAGAGAATTTTGGAAGAGGCAGGTTGTTGTTA-CC 1005
|| ||||||||||| || || || ||||||||||||||||||||| | |||| | ||
Sbjct 969 GCTAGATGGCAAACAGATAGG-AACTAGAGAATTTTGGAAGAGGCAAATCATTGT-AGCC 1026
Query 1006 CGTAGGAAAAGTCAGCCTGCCAGTTACGGGTTCTACTCTCCGGCTAGAGACGAAGCTGAT 1065
| |||| ||||| ||||||| || ||||| ||||||||||| |||||||| |||||| ||
Sbjct 1027 CATAGGCAAAGTGAGCCTGCAAGCTACGGATTCTACTCTCCAGCTAGAGAGGAAGCTAAT 1086
Query 1066 GACGAAGGAAGCTTTACTAGAAAAAAGACGAAA-ATCTACCGGCTCGCGTCTATTGATAG 1124
|| |||||||||| | ||||||||||| ||| |||| ||| ||||| || ||||||||
Sbjct 1087 GAAGAAGGAAGCTGGAATAGAAAAAAGAA-AAAGATCTGCCGTCTCGCTTCAATTGATAG 1145
Query 1125 TGAGGAAGAGAGCACCTATGTGAATTCTGATCAA-GAGTCTGCTTCATGTGAACCCGAGA 1183
|| | |||||| ||||||||||||||||| | | ||||| ||||| ||||| | |||||
Sbjct 1146 CGAAGCAGAGAGGACCTATGTGAATTCTGA-CTATGAGTCAGCTTCCTGTGATCACGAGA 1204
Query 1184 CTCAAAGCAAAGAGGAGAATATCAAGTCTGATCATGAAGCTGATGTCTTTGGTCTAATAT 1243
| ||||||| | | | | |||| |||||| ||||||||| | |||||||| |||
Sbjct 1205 ---A---CAAAGAG-A-A-TCTGAAGTGTGATCAAGAAGCTGATATATTTGGTCTTATAA 1255
Query 1244 GTAAAGTTGAACAGTTGAAGAAAGAGCGTTCTGTTCTTTGGCTT-CGGGAATTTAAGGAG 1302
||||||||||||| |||||||||| ||||||||||| ||| || || || || ||||||
Sbjct 1256 GTAAAGTTGAACACCTGAAGAAAGAACGTTCTGTTCTGTGG-TTGCGAGAGTTCAAGGAG 1314
Query 1303 TGGATAGATCATCCATCCGAGGATTTTGTGGATGTCAGCAAAAATGGG-AGCAGTACTGA 1361
||||| |||||| || | |||||||||| |||||||| ||| | || || ||| | |
Sbjct 1315 TGGATGGATCATTCAACAGAGGATTTTGCAGATGTCAGTAAAGACGGCCAGG-GTA-TCA 1372
Query 1362 -TTCAGAGCAGAAGTACTACATGAAGAATAGA-AA-TGGCCCAAAACATCATGGTGAAAC 1418
|| || |||||||||| | |||| |||| || | | | | |||||||||| |||
Sbjct 1373 ATTTGGAAAAGAAGTACTATACAAAGATTAGAGAAAT--CTCGAGGCATCATGGTGGAAC 1430
Query 1419 AATGAGATATACACCAGGGCCTCTAC 1444
| ||||||| | ||||| || |||
Sbjct 1431 ACCGAGATATGCTTCAGGGTCTTTAC 1456
> Ahg951070 jgi|Araly1|951070|scaffold_802957.1
Length=315
Score = 104 bits (56), Expect = 4e-21
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2185 TCAGATTCCAGCAATGATGAGACTTGTAGGATTTACGTTAGTTGTGATTGCATACTACAG 2244
|||||||||| || |||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 161 TCAGATTCCAACATTGATGAGACTTGTAGGATTTACGTTAGTTGTGATTGTATAATAGAA 220
Query 2245 CAAGAATCCACCTA 2258
||||||||||||||
Sbjct 221 CAAGAATCCACCTA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114537366715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5