BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17930.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929660 jgi|Araly1|929660|scaffold_302117.1 970 0.0
> Ahg929660 jgi|Araly1|929660|scaffold_302117.1
Length=616
Score = 970 bits (525), Expect = 0.0
Identities = 586/615 (95%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 44 TGTTGTGGCTTAAACACAGAAATGGCTTCTTTACCGTTCGGAGTTTCGAATCTATGCAGA 103
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTTGTGGGTTAAACACAGAAATGGCTTCTTTACCGTTCGGAGTTTCGAATCTATGCAGA 60
Query 104 AATCAGGAGGTTCTGTCTGC-GTCTGTAAGGCTTCTTCCGGTTGGGCGACAAACCACAGG 162
||||||||||||||||| || || |||| || ||| |||||| |||| ||||||||||||
Sbjct 61 AATCAGGAGGTTCTGTCCGCGGT-TGTACGGATTCGTCCGGTCGGGCAACAAACCACAGG 119
Query 163 ATTCGGAGCTGCGAAGAAAGTCTTATATAGATTCGAGGGACATAGATTGTCATCATCAGT 222
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 120 ATTCAGAGCTGCGAAGAAAGTCTTATATAGATTCGAGGGACATGGATTGTCGTCATCAGT 179
Query 223 AGAAAAGGGAGAGAAACAGAGAATGAGATGTAGAGTTAGCTCAAACTCTACTGAAACTGA 282
||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 AGAAAAGAGAGAGAAACAAAGAATGAGATGTAGAGTGAGCTCAAACTCTACTGAAACTGA 239
Query 283 AGACGATTCTGCTACAAAAACCAAGACGACGCCGTTTGGTTACACGAGGAAGGATGTTAT 342
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGACGATTCTGCCACAAAAACCAAGACGACGCCGTTTGGTTACACGAGGAAGGATGTTAT 299
Query 343 ATTGATAGGAGTGGGAGTGACTGCACTTGGTATCGGGCTAGAGAGTGGACTTGAGTATGT 402
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 ATTGATAGGAGTGGGAGTGACTGCACTTGGTATCGGCCTAGAGAGTGGACTTGAGTATGT 359
Query 403 GGGAGTTGATCCGTTGCAAGCGGGGAATGCAGTACAGCTGATACTGGTGCTTGGTTTGAC 462
|||||| |||||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 360 GGGAGTAGATCCGTTGCAAGCAGGGAATGCTGTGCAGCTGATACTGGTGCTGGGTTTGAC 419
Query 463 TTTGGGTTGGATTTCGACTTATATCTTTAGAGTCGGTAACAAGGAGATGACTTATGCCCA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGGGTTGGATTTCGACTTATATCTTTAGAGTCGGTAACAAGGAGATGACTTATGCCCA 479
Query 523 GCAACTTCGTGACTACGAGTCTCAAGTCATGCAGAAACGATTGGAGAGCTTATCGGAGGC 582
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 480 GCAACTTCGTGACTACGAGTCTCAAGTCATGCAGAAACGGCTGGAGAGCTTATCAGAGGC 539
Query 583 AGAGTTAGAGGCATTGATGGCACAGGTTGATGAAGAGAAGACCAAGGTTGAGTAGGTTC- 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAGTTAGAGGCATTGATGGCACAGGTTGATGAAGAGAAGACCAAGGTTGAGTAGGTTCT 599
Query 642 CT--CC-ATTGTGTT 653
|| || ||||||||
Sbjct 600 CTGGCCCATTGTGTT 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5