BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17940.1
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479281 jgi|Araly1|479281|fgenesh2_kg.3__1982__AT3G17940.1 1722 0.0
> Ahg479281 jgi|Araly1|479281|fgenesh2_kg.3__1982__AT3G17940.1
Length=1206
Score = 1722 bits (932), Expect = 0.0
Identities = 1137/1230 (92%), Gaps = 38/1230 (3%)
Strand=Plus/Plus
Query 90 TCTAATGGCGGATCAGAGCAAAAACACTCCAGAGATCTTCGAGCTCAACAATGGCACCAT 149
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TCTAATGGCGGATCAGAGCAAGAACACTCCACAGATCTTCGAGCTCAACAATGGCACCAT 60
Query 150 GCAGGTCAAGATCTCAAACTACGGCACCACCATCACCTCTTTGTCTGTTCCCGACAAGAA 209
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 61 GCAGGTCAAGATCTCAAACTACGGCACCACCATCACCTCCTTGTCTGTTCCTGACAAGAA 120
Query 210 CGGGAAACTGGGGGATGTAGTTCTCGGATTCGACTCGGTGGATCCATATGTGAAAGGGCT 269
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGGAAATTGGCTGATGTAGTTCTCGGATTCGACTCGGTGGATCCATATGTGAAAGGGCT 180
Query 270 TGCACCATACTTTGGGTGCATTGTTGGTCGTGTGGCAAATCGGATCAAGGAGGGAAAATT 329
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 181 TGCACCATACTTTGGGTGCATAGTTGGTCGTGTGGCAAATCGGATCAAAGAGGGAAAATT 240
Query 330 CAGTCTCAATGGAGTTAACTACACTTTGCCTATCAACAAGCCTCCTAATAGTCTCCACGG 389
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 241 TAGTCTCAATGGAGTTAACTACACTTTGCCTATCAACAAGCCTCCCAATAGCCTCCACGG 300
Query 390 TGGTAACAAGGGTTTCGATAAGAAGATATGGGAAGTTGCAGGGCACAAGAGAGACGGCGA 449
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TGGTAACAAGGGTTTTGATAAGAAGATATGGGAAGTTGCAGGGCACAAGAAAGACGGCGA 360
Query 450 AAAACCTTTCATCACTTTCAAATATCACAGTGCCGATGGAGAAGAAGGTTACCCTGGTGC 509
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 361 AAAACCTTTCATTACTTTCAAATATCACAGTGCTGATGGGGAAGAAGGTTACCCTGGTGC 420
Query 510 GGTTTCTGTCACGGCGACATACACTCTCACGTCAGCCACGACAATGAGACTTGACATGGA 569
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTTCTGTCACGGCGACATATACTCTCACGTCAGCCACGACAATGAGACTTGACATGGA 480
Query 570 AGCTGTTCCAGAGAACAAAGATACTCCCATCAACTTAGCTCAACATACATACTGGAACTT 629
||||||||||||||||||||| ||||| |||| ||||||||| |||||||| ||||||||
Sbjct 481 AGCTGTTCCAGAGAACAAAGACACTCCAATCAGCTTAGCTCAGCATACATATTGGAACTT 540
Query 630 AGCAGGTCATGACTCAGGAAACATTCTAGACCATAAGATTCAGATATGGGGGTCTCATAT 689
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 541 GGCGGGTCATGACTCAGGAAACATTCTGGACCATAAGATTCAGATTTGGGGGTCTCATAT 600
Query 690 CACGCCGGTTGACGAATACACAGTTCCTACAGGAGAGATCTTGCCTGTAAAGGGAACTCC 749
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 601 CACGCCGGTTGACGAATACACAGTTCCTACAGGGGAGATCTTGCCGGTAAAGGGAACTCC 660
Query 750 TTTCGATTTCACTGAGGAGAAGCGGATAGGCGAGTCTATTGGAGAGGTTGGTATCGGATA 809
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTCGATTTCACAGAGGAGAAACGGATAGGCGAGTCTATTGGAGAGGTTGGTATCGGATA 720
Query 810 CGATCATAACTACGTGTTGGACTGTCCTGATCAAGAGAAGGAGGGGCTGAAACACGCAGC 869
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGATCATAACTACGTATTGGACTGTCCTGATCAAGAGAAGGAGGGGCTGAAACACGCAGC 780
Query 870 GAAGCTCAGTGATGCTGCTAGCTCAAGGGTACTGAACTTGTGGACCAATGTGCCGGGAAT 929
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAGCTCAGCAATGGTGCGAGCTCAAGGGTACTGAACTTGTGGACCAATGTGCCGGGAAT 840
Query 930 GCAGTTTTATACCGGGAACTATGTGAATGGAGTGGTTGGGAAAGGGAATGCGGTTTACGG 989
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 GCAGTTTTATACCGGGAACTATGTGAATGGAGTGGTTGGGAAAGGGAATGCAGTTTACGG 900
Query 990 GAAACATGCGGGTGTGTGCCTTGAGACGCAGGGATTCCCGAACGCGATTAACCAGTCGAA 1049
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 901 GAAACATGCGGGTGTGTGCCTTGAGACACAGGGATTCCCGAACGCGATTAACCAGTCGAA 960
Query 1050 TTTCCCGTCTGTTGTGGTTAAGGCTGGTGAGAAGTACAATCACACGATGCTGTTTGAGTT 1109
||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||
Sbjct 961 TTTCCCGTCTGTTGTGGTTAAAGCTGGTGAGAAGTACCAGCACACAATGCTGTTTGAGTT 1020
Query 1110 TTCAGCTTGAGT--T----T----AT--AGATGGACGTTTTAGGTGTTAGATGATGGGAA 1157
|||||||||||| | | || |||||||||||| |||||||||||||||||||
Sbjct 1021 TTCAGCTTGAGTGATGGGGTTGGTATTTAGATGGACGTTT-AGGTGTTAGATGATGGGAA 1079
Query 1158 TAAAGGGCCGGTTCATTT-GATTCACTGGGCTGGAAAAAGAGTGATTTTAATTTTATCTC 1216
|||||||||||||||||| |||||| | || | ||||||||||||||| ||||
Sbjct 1080 TAAAGGGCCGGTTCATTTTGATTCA-T----TG-A----GAGTGATTTTAATTTCATCT- 1128
Query 1217 TTTGGGGGA-GAATAATAAAACCAAACTGTTTACATTATATTAAAGTTACTTTATTTTTT 1275
|||| | | | | | || | | || | |||||||||||||||||||||
Sbjct 1129 TTTGATCGTTG--TCGTGGAG--AA--T----A-ATAA-ATTAAAGTTACTTTATTTTTT 1176
Query 1276 CATATCTTCTAAACATTTGGCCCATTTGTG 1305
||||||||||||||||||||||||||||||
Sbjct 1177 CATATCTTCTAAACATTTGGCCCATTTGTG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48873579594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5