BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17950.1 Length=885 Score E Sequences producing significant alignments: (Bits) Value Ahg929662 jgi|Araly1|929662|scaffold_302119.1 926 0.0 > Ahg929662 jgi|Araly1|929662|scaffold_302119.1 Length=678 Score = 926 bits (501), Expect = 0.0 Identities = 630/689 (91%), Gaps = 22/689 (3%) Strand=Plus/Plus Query 49 TTTGAAACCAGCGATTACAGAGATGCAAGATCCTCATGTCCCATCTTCTCCAACTATCTC 108 ||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 1 TTTGAGACCAGCCATTACAGAGATGCAAGATCCTCATGTGCCATCTTCTCCCACCATCTC 60 Query 109 CTCCGTCTCTTCCTCCGATCTTGATACTGAGTCAACAGGATCGTTCTTCCATGACAGAAG 168 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 61 CTCCGTCTCTTCCTCCGATCTTGATACCGAGTCTACAGGATCGTTCTTCCATGACAGAAG 120 Query 169 CATCACACTTGGAACGCTTATGGGATTTAGTTTCACTGCAACTATGCCGATGCCATTTAG 228 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 CATCACACTGGGAACGCTTATGGGATTTAGTTTCACTGCAACCATGCCGATGCCATTTAG 180 Query 229 AGCCTCTTC--AC-GCC--G-CCACGTGTCACCTTCCGTCGCAATCTCACGAGCTTCTAG 282 ||| ||||| || ||| | |||||||||||| ||||||||||||||||||||||| || Sbjct 181 AGCTTCTTCGCACCGCCACGGCCACGTGTCACCCTCCGTCGCAATCTCACGAGCTTCCAG 240 Query 283 CTCCAATGCAAGACGCAACCACCAGAGAAAGCGTCCTCCTTCAAATTCGGCTGAGCCTGA 342 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | Sbjct 241 CTCCAATGCAAGACGCCACCACCAGAGAAAGCGTCCTCCTTTAAATTCGGCTGAGCCTCA 300 Query 343 GC--CG-CATCGCCGCCGTAAATGGTGGCGGTTTTGCCGAGATGACGATGACGACGCCGC 399 | || |||||||| || || |||||||| |||||||||||||||||| ||||||||| Sbjct 301 TCAGCGGCATCGCCGTCGCAAGTGGTGGCGCTTTTGCCGAGATGACGATAACGACGCCG- 359 Query 400 CGGAAATGGAATCCACCGTGGAACAGGAGATTCAAAGCGGTCATCGCTCGGGGAGTATCT 459 | || | |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 360 -G-AA-T-----CCACCGTGCCACCGGAGATTCAAAGCGGTCATCGCTCGGGGAATATCT 411 Query 460 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 471 Query 520 GGATGCGGTGGTGGCACGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 579 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 GGGTGCGGTGGTGGCGCGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 531 Query 580 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGCTGAAG-TGGTTACCGGAGAAGGAACGC 638 |||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||| Sbjct 532 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGTTGAAGCTG-TTACCGGAGAAGGTACGC 590 Query 639 CGGTAGCCACGTCCCTTTGTAGATTTCCGGTATCTTTAACCGGTATATGCAGCGGTGGTG 698 |||| ||| || | ||||||||||| ||||| |||||||||||||||||||| ||||| | Sbjct 591 CGGTGGCCTCGGCTCTTTGTAGATTCCCGGTTTCTTTAACCGGTATATGCAGTGGTGGCG 650 Query 699 GAGGATGAAT-ACGTCGGTTCATGTGTGT 726 |||||| ||| |||||||||||||||||| Sbjct 651 GAGGAT-AATTACGTCGGTTCATGTGTGT 678 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32785708620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5