BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17950.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929662 jgi|Araly1|929662|scaffold_302119.1 926 0.0
> Ahg929662 jgi|Araly1|929662|scaffold_302119.1
Length=678
Score = 926 bits (501), Expect = 0.0
Identities = 630/689 (91%), Gaps = 22/689 (3%)
Strand=Plus/Plus
Query 49 TTTGAAACCAGCGATTACAGAGATGCAAGATCCTCATGTCCCATCTTCTCCAACTATCTC 108
||||| |||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1 TTTGAGACCAGCCATTACAGAGATGCAAGATCCTCATGTGCCATCTTCTCCCACCATCTC 60
Query 109 CTCCGTCTCTTCCTCCGATCTTGATACTGAGTCAACAGGATCGTTCTTCCATGACAGAAG 168
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 61 CTCCGTCTCTTCCTCCGATCTTGATACCGAGTCTACAGGATCGTTCTTCCATGACAGAAG 120
Query 169 CATCACACTTGGAACGCTTATGGGATTTAGTTTCACTGCAACTATGCCGATGCCATTTAG 228
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CATCACACTGGGAACGCTTATGGGATTTAGTTTCACTGCAACCATGCCGATGCCATTTAG 180
Query 229 AGCCTCTTC--AC-GCC--G-CCACGTGTCACCTTCCGTCGCAATCTCACGAGCTTCTAG 282
||| ||||| || ||| | |||||||||||| ||||||||||||||||||||||| ||
Sbjct 181 AGCTTCTTCGCACCGCCACGGCCACGTGTCACCCTCCGTCGCAATCTCACGAGCTTCCAG 240
Query 283 CTCCAATGCAAGACGCAACCACCAGAGAAAGCGTCCTCCTTCAAATTCGGCTGAGCCTGA 342
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct 241 CTCCAATGCAAGACGCCACCACCAGAGAAAGCGTCCTCCTTTAAATTCGGCTGAGCCTCA 300
Query 343 GC--CG-CATCGCCGCCGTAAATGGTGGCGGTTTTGCCGAGATGACGATGACGACGCCGC 399
| || |||||||| || || |||||||| |||||||||||||||||| |||||||||
Sbjct 301 TCAGCGGCATCGCCGTCGCAAGTGGTGGCGCTTTTGCCGAGATGACGATAACGACGCCG- 359
Query 400 CGGAAATGGAATCCACCGTGGAACAGGAGATTCAAAGCGGTCATCGCTCGGGGAGTATCT 459
| || | |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 360 -G-AA-T-----CCACCGTGCCACCGGAGATTCAAAGCGGTCATCGCTCGGGGAATATCT 411
Query 460 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 471
Query 520 GGATGCGGTGGTGGCACGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 579
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GGGTGCGGTGGTGGCGCGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 531
Query 580 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGCTGAAG-TGGTTACCGGAGAAGGAACGC 638
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||
Sbjct 532 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGTTGAAGCTG-TTACCGGAGAAGGTACGC 590
Query 639 CGGTAGCCACGTCCCTTTGTAGATTTCCGGTATCTTTAACCGGTATATGCAGCGGTGGTG 698
|||| ||| || | ||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 591 CGGTGGCCTCGGCTCTTTGTAGATTCCCGGTTTCTTTAACCGGTATATGCAGTGGTGGCG 650
Query 699 GAGGATGAAT-ACGTCGGTTCATGTGTGT 726
|||||| ||| ||||||||||||||||||
Sbjct 651 GAGGAT-AATTACGTCGGTTCATGTGTGT 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5