BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17980.1 Length=1072 Score E Sequences producing significant alignments: (Bits) Value Ahg479285 jgi|Araly1|479285|fgenesh2_kg.3__1986__AT3G17980.1 1378 0.0 Ahg923194 jgi|Araly1|923194|scaffold_104475.1 364 6e-100 > Ahg479285 jgi|Araly1|479285|fgenesh2_kg.3__1986__AT3G17980.1 Length=973 Score = 1378 bits (746), Expect = 0.0 Identities = 920/997 (92%), Gaps = 39/997 (4%) Strand=Plus/Plus Query 53 AGAAACCAAAGAGACCTGCCCTAATATTTAGCGATGATAGTTTGAACGGAACGAAATC-T 111 ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| | | Sbjct 1 AGAAACCAAAGCGACCTGCCCTAATCTTTAGCGATGATAGTTTAAACGGAACGAAA-CTT 59 Query 112 GACGAAAGAAACTAAAGAGAC-C-TTTGAATTATCTTCACGGCGTTAACaaaaa-a-aaa 167 |||| |||||||||||||||| | ||||||| ||||||| | || ||||| | ||| Sbjct 60 GACG-AAGAAACTAAAGAGACACATTTGAATCATCTTCA--TAGAAAATAAAAATATAAA 116 Query 168 GGGTTGTAGAAAGTGAGTAAGGAAGAAATAATCAGGAACATTAATAAAGGAAATGACAAC 227 | |||||||||||| | ||| || | | | ||||| ||||||||||||||| Sbjct 117 --ATCGTAGAAAGTGAG--A--AAG----AA--A-G-A-ATTAAAAAAGGAAATGACAAC 161 Query 228 GGCGTGTCCGGCGAGGACAAGCTCACTAATGGACGATCTCTTGGGCCTCCTTAGAATCCG 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 GGCGTGTCCGGCGAGGACAAGCTCACTAATGGACGATCTCTTGGGCCTCCTTAGAATCCG 221 Query 288 TATCAAACGTGGCGTCAATTTAGCCGTCCGTGACATCAGTAGCAGCGATCCTTACGTCGT 347 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 CATCAAACGTGGCGTCAATTTAGCCGTCCGTGACATCAGTAGCAGCGATCCTTACGTCGT 281 Query 348 CGTCAAGATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTTAATCCAGA 407 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 282 CGTCAAAATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTAAATCCAGA 341 Query 408 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGACGGT 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGACGGT 401 Query 468 GTATGATCACGACATGTTTAGCAAAGACGACAAGATGGGCGATGCTGAGTTCGAGATAAA 527 ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 402 GTACGATCACGACATGTTTAGCAAAGACGATAAGATGGGTGATGCTGAGTTCGAGATAAA 461 Query 528 GCCCTATATTGAGGCTTTGAGGATGCAACTCGATGGACTTCCTAGTGGAACCATTGTGAC 587 ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 462 GCCGTATATTGAGGCTTTGAGGATGCAGCTTGATGGACTTCCTAGTGGAACCATTGTGAC 521 Query 588 CACGGTTAAGCCAAGTCGTCGTAACTGTCTAGCCGAGGAGTCACGTGTCACCTGGGTCGA 647 ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 522 CACGGTTAAGCCAAGTCGTCGCAACTGTCTTGCCGAGGAGTCACGTGTCACATGGGTCGA 581 Query 648 CGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGAGGTCGA 707 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 CGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGAGGTCGA 641 Query 708 GGCTCAGCTTCAATGGATTGACCTCCCTGGCTCCAAGGGTCTATGAATCTTTTTTCTTTT 767 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 642 GGCTCAACTTCAATGGATTGATCTCCCTGGCTCCAAGGGTCTATGAATCTTTTTTCTTTT 701 Query 768 ---CTTATTTACCGTTACTTTGAGTTGTTTTCTTTCAAATTGAACTAAACCAAGTAACAG 824 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 TTTCTTATTCACCGTTACTTTGAGTTGTTTTCTTTCAAATTGAACTAAACCAAGTAACAG 761 Query 825 CATGGaaaaaaa--CAAGTAATTTCAATCTTGAAGGATATAG-T---GAACTAGAAACAC 878 |||||||||||| |||||| ||||||||||||||||||||| | |||||| |||| | Sbjct 762 CATGGAAAAAAAAACAAGTA-TTTCAATCTTGAAGGATATAGCTAATGAACTATAAACGC 820 Query 879 GTATTAATCCATGGAAATATAAGGATTAAGAACGTTGAGGGAAGTTTTGTTCCCATATGG 938 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 821 GTATTAATCCATGGGAATATAAGGATTAAGAACATTGAGGGAAGTTTTGTTCCCATATGG 880 Query 939 TGATCGAGTCCAAGTCGAGTC-GTGGTGGTGGATATGTAAATGTGGTGTATTGTTGATGT 997 |||||||||||||||||||| || |||||| ||||||||| |||||||||||||||| Sbjct 881 TGATCGAGTCCAAGTCGAGTGAGTCATGGTGGGCATGTAAATGCGGTGTATTGTTGATGT 940 Query 998 GTATGTATATTTGGGCTAGCTATGCCTTAAATAAGGC 1034 |||| || || ||||||||||||||||||| ||||| Sbjct 941 GTAT--AT-TT-GGGCTAGCTATGCCTTAAAGAAGGC 973 > Ahg923194 jgi|Araly1|923194|scaffold_104475.1 Length=554 Score = 364 bits (197), Expect = 6e-100 Identities = 393/486 (81%), Gaps = 20/486 (4%) Strand=Plus/Plus Query 289 ATCAAACGTGGCGTCAATTTAGCCGTCCGTGA-CATCAGTAGCAGCGATCCTTACGTCGT 347 |||||||| ||||||||| | || ||||| || | ||| || || |||||||||||||| Sbjct 70 ATCAAACGCGGCGTCAATCTCGCAGTCCGCGATC-TCAACAGTAGTGATCCTTACGTCGT 128 Query 348 CGTCAAGATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTTAATCCAGA 407 |||||| ||||| ||||||||| |||||||||| || ||| |||||||||| ||||| || Sbjct 129 CGTCAAAATGGGAAAACAGAAAATGAAGACTCGAGTTATTTACAAAGATGTAAATCCTGA 188 Query 408 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACT-CCAATCTTACCGTCCTCTTGACGG 466 |||||||||||||| |||||||| || |||| | |||||||||||||||||||||||| Sbjct 189 GTGGAATGAAGATTTAACTCTCTCAGTTTCAGA-TCCCAATCTTACCGTCCTCTTGACGG 247 Query 467 TGTATGA-TCACGACATGTTTAGCAAAGACGACAAGATGGGCGATGCTGAGTTCGAGATA 525 ||||||| | |||||| ||| | |||||| ||||||||||| ||||| || |||| |||| Sbjct 248 TGTATGACT-ACGACACGTTCACCAAAGATGACAAGATGGGAGATGCAGAATTCGTGATA 306 Query 526 AAGCCCTATATTGAGGCTTTGAGGATGCAACT--CGATGGA-CTTCCTAGTGGAACCATT 582 ||||| | | || | || |||| |||||| || | ||| | || ||| ||| |||||| Sbjct 307 AAGCCGTTTGTTAATGCATTGAAGATGCA-CTTAC-ATG-ATCTCCCTTCTGGGACCATT 363 Query 583 GTGACCACGGTTAAGCCAAGTCGTCGT-AACTGTCTAGCCGAGGAGTCACGTGTCACCTG 641 ||||||||||| |||| || || | || || |||||||||||||| || || | || Sbjct 364 GTGACCACGGTCCAGCCTAGCCGA-GACAATTGCCTAGCCGAGGAGTCTCGGGTTATTTG 422 Query 642 GGTC-GACGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAG 700 | || ||||| |||||||| || ||| | ||||| ||| | ||||||| || ||||| | Sbjct 423 G-TCTGACGGTAAGCTCGTTCAAGATATAGTTCTTAGACTAAGACATGTCGAGTGCGGTG 481 Query 701 AGGTCGAGGCTCAGCTTCAATGGATTGACCT-CCCTGGCTCCAAGGGTCTATGAATCT-T 758 |||| || ||||| |||||||||||||| || ||| || || |||||||||| ||| | | Sbjct 482 AGGTTGAAGCTCAACTTCAATGGATTGATCTTCCC-GGATCTAAGGGTCTAT-AATTTGT 539 Query 759 TTTTCT 764 |||||| Sbjct 540 TTTTCT 545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39914694099 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5