BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17980.1
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479285 jgi|Araly1|479285|fgenesh2_kg.3__1986__AT3G17980.1 1378 0.0
Ahg923194 jgi|Araly1|923194|scaffold_104475.1 364 6e-100
> Ahg479285 jgi|Araly1|479285|fgenesh2_kg.3__1986__AT3G17980.1
Length=973
Score = 1378 bits (746), Expect = 0.0
Identities = 920/997 (92%), Gaps = 39/997 (4%)
Strand=Plus/Plus
Query 53 AGAAACCAAAGAGACCTGCCCTAATATTTAGCGATGATAGTTTGAACGGAACGAAATC-T 111
||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| | |
Sbjct 1 AGAAACCAAAGCGACCTGCCCTAATCTTTAGCGATGATAGTTTAAACGGAACGAAA-CTT 59
Query 112 GACGAAAGAAACTAAAGAGAC-C-TTTGAATTATCTTCACGGCGTTAACaaaaa-a-aaa 167
|||| |||||||||||||||| | ||||||| ||||||| | || ||||| | |||
Sbjct 60 GACG-AAGAAACTAAAGAGACACATTTGAATCATCTTCA--TAGAAAATAAAAATATAAA 116
Query 168 GGGTTGTAGAAAGTGAGTAAGGAAGAAATAATCAGGAACATTAATAAAGGAAATGACAAC 227
| |||||||||||| | ||| || | | | ||||| |||||||||||||||
Sbjct 117 --ATCGTAGAAAGTGAG--A--AAG----AA--A-G-A-ATTAAAAAAGGAAATGACAAC 161
Query 228 GGCGTGTCCGGCGAGGACAAGCTCACTAATGGACGATCTCTTGGGCCTCCTTAGAATCCG 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GGCGTGTCCGGCGAGGACAAGCTCACTAATGGACGATCTCTTGGGCCTCCTTAGAATCCG 221
Query 288 TATCAAACGTGGCGTCAATTTAGCCGTCCGTGACATCAGTAGCAGCGATCCTTACGTCGT 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CATCAAACGTGGCGTCAATTTAGCCGTCCGTGACATCAGTAGCAGCGATCCTTACGTCGT 281
Query 348 CGTCAAGATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTTAATCCAGA 407
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 282 CGTCAAAATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTAAATCCAGA 341
Query 408 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGACGGT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGACGGT 401
Query 468 GTATGATCACGACATGTTTAGCAAAGACGACAAGATGGGCGATGCTGAGTTCGAGATAAA 527
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 402 GTACGATCACGACATGTTTAGCAAAGACGATAAGATGGGTGATGCTGAGTTCGAGATAAA 461
Query 528 GCCCTATATTGAGGCTTTGAGGATGCAACTCGATGGACTTCCTAGTGGAACCATTGTGAC 587
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 462 GCCGTATATTGAGGCTTTGAGGATGCAGCTTGATGGACTTCCTAGTGGAACCATTGTGAC 521
Query 588 CACGGTTAAGCCAAGTCGTCGTAACTGTCTAGCCGAGGAGTCACGTGTCACCTGGGTCGA 647
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 522 CACGGTTAAGCCAAGTCGTCGCAACTGTCTTGCCGAGGAGTCACGTGTCACATGGGTCGA 581
Query 648 CGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGAGGTCGA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGAGGTCGA 641
Query 708 GGCTCAGCTTCAATGGATTGACCTCCCTGGCTCCAAGGGTCTATGAATCTTTTTTCTTTT 767
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 642 GGCTCAACTTCAATGGATTGATCTCCCTGGCTCCAAGGGTCTATGAATCTTTTTTCTTTT 701
Query 768 ---CTTATTTACCGTTACTTTGAGTTGTTTTCTTTCAAATTGAACTAAACCAAGTAACAG 824
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTTCTTATTCACCGTTACTTTGAGTTGTTTTCTTTCAAATTGAACTAAACCAAGTAACAG 761
Query 825 CATGGaaaaaaa--CAAGTAATTTCAATCTTGAAGGATATAG-T---GAACTAGAAACAC 878
|||||||||||| |||||| ||||||||||||||||||||| | |||||| |||| |
Sbjct 762 CATGGAAAAAAAAACAAGTA-TTTCAATCTTGAAGGATATAGCTAATGAACTATAAACGC 820
Query 879 GTATTAATCCATGGAAATATAAGGATTAAGAACGTTGAGGGAAGTTTTGTTCCCATATGG 938
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 821 GTATTAATCCATGGGAATATAAGGATTAAGAACATTGAGGGAAGTTTTGTTCCCATATGG 880
Query 939 TGATCGAGTCCAAGTCGAGTC-GTGGTGGTGGATATGTAAATGTGGTGTATTGTTGATGT 997
|||||||||||||||||||| || |||||| ||||||||| ||||||||||||||||
Sbjct 881 TGATCGAGTCCAAGTCGAGTGAGTCATGGTGGGCATGTAAATGCGGTGTATTGTTGATGT 940
Query 998 GTATGTATATTTGGGCTAGCTATGCCTTAAATAAGGC 1034
|||| || || ||||||||||||||||||| |||||
Sbjct 941 GTAT--AT-TT-GGGCTAGCTATGCCTTAAAGAAGGC 973
> Ahg923194 jgi|Araly1|923194|scaffold_104475.1
Length=554
Score = 364 bits (197), Expect = 6e-100
Identities = 393/486 (81%), Gaps = 20/486 (4%)
Strand=Plus/Plus
Query 289 ATCAAACGTGGCGTCAATTTAGCCGTCCGTGA-CATCAGTAGCAGCGATCCTTACGTCGT 347
|||||||| ||||||||| | || ||||| || | ||| || || ||||||||||||||
Sbjct 70 ATCAAACGCGGCGTCAATCTCGCAGTCCGCGATC-TCAACAGTAGTGATCCTTACGTCGT 128
Query 348 CGTCAAGATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTTAATCCAGA 407
|||||| ||||| ||||||||| |||||||||| || ||| |||||||||| ||||| ||
Sbjct 129 CGTCAAAATGGGAAAACAGAAAATGAAGACTCGAGTTATTTACAAAGATGTAAATCCTGA 188
Query 408 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACT-CCAATCTTACCGTCCTCTTGACGG 466
|||||||||||||| |||||||| || |||| | ||||||||||||||||||||||||
Sbjct 189 GTGGAATGAAGATTTAACTCTCTCAGTTTCAGA-TCCCAATCTTACCGTCCTCTTGACGG 247
Query 467 TGTATGA-TCACGACATGTTTAGCAAAGACGACAAGATGGGCGATGCTGAGTTCGAGATA 525
||||||| | |||||| ||| | |||||| ||||||||||| ||||| || |||| ||||
Sbjct 248 TGTATGACT-ACGACACGTTCACCAAAGATGACAAGATGGGAGATGCAGAATTCGTGATA 306
Query 526 AAGCCCTATATTGAGGCTTTGAGGATGCAACT--CGATGGA-CTTCCTAGTGGAACCATT 582
||||| | | || | || |||| |||||| || | ||| | || ||| ||| ||||||
Sbjct 307 AAGCCGTTTGTTAATGCATTGAAGATGCA-CTTAC-ATG-ATCTCCCTTCTGGGACCATT 363
Query 583 GTGACCACGGTTAAGCCAAGTCGTCGT-AACTGTCTAGCCGAGGAGTCACGTGTCACCTG 641
||||||||||| |||| || || | || || |||||||||||||| || || | ||
Sbjct 364 GTGACCACGGTCCAGCCTAGCCGA-GACAATTGCCTAGCCGAGGAGTCTCGGGTTATTTG 422
Query 642 GGTC-GACGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAG 700
| || ||||| |||||||| || ||| | ||||| ||| | ||||||| || ||||| |
Sbjct 423 G-TCTGACGGTAAGCTCGTTCAAGATATAGTTCTTAGACTAAGACATGTCGAGTGCGGTG 481
Query 701 AGGTCGAGGCTCAGCTTCAATGGATTGACCT-CCCTGGCTCCAAGGGTCTATGAATCT-T 758
|||| || ||||| |||||||||||||| || ||| || || |||||||||| ||| | |
Sbjct 482 AGGTTGAAGCTCAACTTCAATGGATTGATCTTCCC-GGATCTAAGGGTCTAT-AATTTGT 539
Query 759 TTTTCT 764
||||||
Sbjct 540 TTTTCT 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39914694099
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5