BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18010.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479288 jgi|Araly1|479288|fgenesh2_kg.3__1989__AT3G18010.1 1703 0.0
Ahg497288 jgi|Araly1|497288|fgenesh2_kg.143__1__AT3G18010.1 1698 0.0
> Ahg479288 jgi|Araly1|479288|fgenesh2_kg.3__1989__AT3G18010.1
Length=1134
Score = 1703 bits (922), Expect = 0.0
Identities = 1076/1148 (94%), Gaps = 20/1148 (2%)
Strand=Plus/Plus
Query 19 TTTACTTGCTATATCGCTG--TCTCTCTCCCTTCTCCTCTATAAACATACATATAAATTA 76
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTACTTGC--TATCGCTGTCTCTCTCTCCCTTCTCCTCTATAAACATACATATAAATTA 58
Query 77 AGTACACACCAAAATGTGGACGATGGGTTACAACGAAGGAGGCGCAGATTCCTTCAACGG 136
||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 59 AGT--ACACCAAAATGTGGACGATGGGTTACAACGAAGGGGGCGGAGATTCCTTCAACGG 116
Query 137 AGGAAGAAAGCTTCGTCCTCTCATCCCACGTCTCACTTCTTGCCCCACCGCCGCCGTAAA 196
|||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 117 AGGAAGAAAGCTTCGTCCTCTCATCCCACGCCTCTCATCTTGTCCCACCGCCGCCGTAAA 176
Query 197 CACCAACTCCGACCACCGCTTTAATATGGCAGTGGTGACGATGACGGCGGAGCAGAACAA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CACCAACTCCGACCACCGCTTTAATATGGCAGTGGTGACGATGACGGCGGAGCAGAACAA 236
Query 257 GAGGGAGCTGATGATGCTAAACTCAGAACCTCAACATCCACCGGTAATGGTGAGCTCACG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAGGGAGCTGATGATGCTAAACTCAGAACCTCAACATCCACCGGTAATGGTGAGCTCACG 296
Query 317 GTGGAATCCGACACCAGATCAGTTAAGGGTTCTTGAAGAGCTTTACCGACAAGGAACTAG 376
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGGAATCCGACGCCAGATCAGTTAAGGGTTCTTGAAGAGCTTTACCGACAAGGAACTAG 356
Query 377 AACTCCTTCTGCCGACCACATCCAACAAATCACCGCACAGCTACGACGGTACGGGAAGAT 436
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 357 AACTCCTTCTGCCGACCACATCCAACAAATCACGGCACAACTACGACGGTACGGGAAGAT 416
Query 437 AGAAGGCAAAAACGTTTTCTATTGGTTCCAAAACCACAAAGCCCGAGAACGCCAGAAACG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGAAGGCAAAAACGTTTTCTATTGGTTCCAAAACCACAAAGCCCGAGAACGCCAGAAACG 476
Query 497 ACGGCGACAAATGGAAACTGGCCACGAAGAAACGGTCCTTTCAACAGCAAGTCTTGTCTC 556
||| ||||| |||||| |||| || |||||| ||||| |||||||| |||||||||||||
Sbjct 477 ACGACGACAGATGGAAGCTGGTCATGAAGAATCGGTCTTTTCAACAACAAGTCTTGTCTC 536
Query 557 AAACCACGGATTCGACAAGAAAGATCC-TCCAGGTTACAAGGTTGAACAGGTC-AAGAAC 614
||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 537 AAACCACGGATTCGACAAGAAAGATCCGTC-AGGTTACAAGGTTGAACAG-TCCAAGAAC 594
Query 615 TGGATATGTTCGGTCGGATGCGACACGCAACCAGAGAAACCTTCCCGTGATTATCATCTG 674
|||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 595 TGGATATGTTCGATCGGATGCGACACACAACCAGAGAAACCTTCCCATGATCATCATCTG 654
Query 675 GAGGAGCCAGCGAATATACGGGTGGAGCACAATGCTCGTTGTGGAGGAGACGAGAGACGA 734
|||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 655 GAGGAGCCAGCGAACATACGGGTCGAGCGCAATGGTCGTTGTGGAGGAGACGAGAGACGA 714
Query 735 AGCTTTTTAGGGATAAACACCACGTGGCAGATGATGCAGTTGCCACCTAGTTTCTACTCT 794
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 715 AGCGTTTTAGGGATAAACGCCACGTGGCAGATGATGCAGTTGCCACCTGGTTTCTACCCT 774
Query 795 TCTTCACATCATCATCATCAACGTAACCTCATTCTCAATTCACCTACTGTTTCCTCCAAC 854
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 775 TCTCCACATCATCATCATCAACGTAACCTCATTCTCAATTCAACTACTGTTTCCTCCAAC 834
Query 855 ATGTCCAACAGCAACAATGCTGTCTCTGCTT-CTAAAGATACGGTCACGGTTTCACCTGT 913
|||||||| ||||||| | |||| |||| || ||||||||||||||||| ||||||||||
Sbjct 835 ATGTCCAATAGCAACATTACTGTTTCTG-TTGCTAAAGATACGGTCACGATTTCACCTGT 893
Query 914 ATTTCTACGTACGAGAGAAGCAACGAACACAGAGACTTGTCATCGAAATGGTGATGATAA 973
|||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 894 ATTTCTACGTACCAGAGAAGCAGCGAACACAGAGACTTGTCGTCGAAATTGTGATGATAA 953
Query 974 TAAAGATCAAGAACAACATGAAGATTGCTCCAACGGTGAATTGGATCATCAAGAACAGAC 1033
|||||||||||||| || |||||||| ||||||||| ||||||||||||||||||
Sbjct 954 TAAAGATCAAGAAC-----GA-GATTGCTCTAACGGTGAACCGGATCATCAAGAACAGAC 1007
Query 1034 ACTTGAGCTGTTTCCACTGAGAAAAGAAGGGTTTTGTAGCGATGGTGAGAAAGACAAGAA 1093
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1008 ACTTGAGCTGTTTCCACTGAGAAAAGAAGGGTTTTGTAGCGATGGTGAGAAAGAGAAGGA 1067
Query 1094 CATTAGTGGCATTCACTGTTTCTATGAGTTTCTGCC-ATTGAAGAACTAAACCTAATTGA 1152
|| | | | |||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 1068 GATCAATAGTATTCACTGTTTCTATGAGTTTCTGCCTAT-GAAGAACTAAACATAATTGA 1126
Query 1153 AGTCTTTC 1160
| ||||||
Sbjct 1127 ATTCTTTC 1134
> Ahg497288 jgi|Araly1|497288|fgenesh2_kg.143__1__AT3G18010.1
Length=1134
Score = 1698 bits (919), Expect = 0.0
Identities = 1074/1147 (94%), Gaps = 18/1147 (2%)
Strand=Plus/Plus
Query 19 TTTACTTGCTATATCGCTG--TCTCTCTCCCTTCTCCTCTATAAACATACATATAAATTA 76
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTACTTGC--TATCGCTGTCTCTCTCTCCCTTCTCCTCTATAAACATACATATAAATTA 58
Query 77 AGTACACACCAAAATGTGGACGATGGGTTACAACGAAGGAGGCGCAGATTCCTTCAACGG 136
||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 59 AGT--ACACCAAAATGTGGACGATGGGTTACAACGAAGGGGGCGGAGATTCCTTCAACGG 116
Query 137 AGGAAGAAAGCTTCGTCCTCTCATCCCACGTCTCACTTCTTGCCCCACCGCCGCCGTAAA 196
|||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 117 AGGAAGAAAGCTTCGTCCTCTCATCCCACGCCTCTCATCTTGTCCCACCGCCGCCGTAAA 176
Query 197 CACCAACTCCGACCACCGCTTTAATATGGCAGTGGTGACGATGACGGCGGAGCAGAACAA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CACCAACTCCGACCACCGCTTTAATATGGCAGTGGTGACGATGACGGCGGAGCAGAACAA 236
Query 257 GAGGGAGCTGATGATGCTAAACTCAGAACCTCAACATCCACCGGTAATGGTGAGCTCACG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAGGGAGCTGATGATGCTAAACTCAGAACCTCAACATCCACCGGTAATGGTGAGCTCACG 296
Query 317 GTGGAATCCGACACCAGATCAGTTAAGGGTTCTTGAAGAGCTTTACCGACAAGGAACTAG 376
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGGAATCCGACGCCAGATCAGTTAAGGGTTCTTGAAGAGCTTTACCGACAAGGAACTAG 356
Query 377 AACTCCTTCTGCCGACCACATCCAACAAATCACCGCACAGCTACGACGGTACGGGAAGAT 436
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 357 AACTCCTTCTGCCGACCACATCCAACAAATCACGGCACAACTACGACGGTACGGGAAGAT 416
Query 437 AGAAGGCAAAAACGTTTTCTATTGGTTCCAAAACCACAAAGCCCGAGAACGCCAGAAACG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGAAGGCAAAAACGTTTTCTATTGGTTCCAAAACCACAAAGCCCGAGAACGCCAGAAACG 476
Query 497 ACGGCGACAAATGGAAACTGGCCACGAAGAAACGGTCCTTTCAACAGCAAGTCTTGTCTC 556
||| ||||| |||||| |||| || |||||| ||||| |||||||| |||||||||||||
Sbjct 477 ACGACGACAGATGGAAGCTGGTCATGAAGAATCGGTCTTTTCAACAACAAGTCTTGTCTC 536
Query 557 AAACCACGGATTCGACAAGAAAGATCC-TCCAGGTTACAAGGTTGAACAGGTC-AAGAAC 614
||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 537 AAACCACGGATTCGACAAGAAAGATCCGTC-AGGTTACAAGGTTGAACAG-TCCAAGAAC 594
Query 615 TGGATATGTTCGGTCGGATGCGACACGCAACCAGAGAAACCTTCCCGTGATTATCATCTG 674
|||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 595 TGGATATGTTCGATCGGATGCGACACACAACCAGAGAAACCTTCCCATGATCATCATCTG 654
Query 675 GAGGAGCCAGCGAATATACGGGTGGAGCACAATGCTCGTTGTGGAGGAGACGAGAGACGA 734
|||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 655 GAGGAGCCAGCGAACATACGGGTCGAGCGCAATGGTCGTTGTGGAGGAGACGAGAGACGA 714
Query 735 AGCTTTTTAGGGATAAACACCACGTGGCAGATGATGCAGTTGCCACCTAGTTTCTACTCT 794
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 715 AGCGTTTTAGGGATAAACGCCACGTGGCAGATGATGCAGTTGCCACCTGGTTTCTACCCT 774
Query 795 TCTTCACATCATCATCATCAACGTAACCTCATTCTCAATTCACCTACTGTTTCCTCCAAC 854
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 775 TCTCCACATCATCATCATCAACGTAACCTCATTCTCAATTCAACTACTGTTTCCTCCAAC 834
Query 855 ATGTCCAACAGCAACAATGCTGTCTCTGCTTCTAAAGATACGGTCACGGTTTCACCTGTA 914
|||||||| ||||||| | |||| |||||| | ||||||||||||||| |||||||||||
Sbjct 835 ATGTCCAATAGCAACATTACTGTTTCTGCTGCCAAAGATACGGTCACGATTTCACCTGTA 894
Query 915 TTTCTACGTACGAGAGAAGCAACGAACACAGAGACTTGTCATCGAAATGGTGATGATAAT 974
||||||||||| ||||||||| |||||||||||||| ||| ||||||| |||||||||||
Sbjct 895 TTTCTACGTACCAGAGAAGCAGCGAACACAGAGACTAGTCGTCGAAATTGTGATGATAAT 954
Query 975 AAAGATCAAGAACAACATGAAGATTGCTCCAACGGTGAATTGGATCATCAAGAACAGACA 1034
||||||||||||| || |||||||| ||||||||| |||||||||||||||||||
Sbjct 955 AAAGATCAAGAAC-----GA-GATTGCTCTAACGGTGAACCGGATCATCAAGAACAGACA 1008
Query 1035 CTTGAGCTGTTTCCACTGAGAAAAGAAGGGTTTTGTAGCGATGGTGAGAAAGACAAGAAC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1009 CTTGAGCTGTTTCCACTGAGAAAAGAAGGGTTTTGTAGCGATGGTGAGAAAGAGAAGGAG 1068
Query 1095 ATTAGTGGCATTCACTGTTTCTATGAGTTTCTGCC-ATTGAAGAACTAAACCTAATTGAA 1153
|| | | | |||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1069 ATCAATAGTATTCACTGTTTCTATGAGTTTCTGCCTAT-GAAGAACTAAACATAATTGAA 1127
Query 1154 GTCTTTC 1160
||||||
Sbjct 1128 TTCTTTC 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5