BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18030.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479290 jgi|Araly1|479290|fgenesh2_kg.3__1991__AT3G18030.1 1312 0.0
Ahg314295 jgi|Araly1|314295|fgenesh1_pm.C_scaffold_1003075 586 1e-166
> Ahg479290 jgi|Araly1|479290|fgenesh2_kg.3__1991__AT3G18030.1
Length=919
Score = 1312 bits (710), Expect = 0.0
Identities = 881/956 (92%), Gaps = 41/956 (4%)
Strand=Plus/Plus
Query 239 TCGACCAGATCAATTTTTCGGTTAGGGTTCTTCGCCGAACCATTGGCTACTTTGCTAGAT 298
|||||||||||||||||||||||||||||| ||||||||||| | | | | | |||
Sbjct 1 TCGACCAGATCAATTTTTCGGTTAGGGTTCCTCGCCGAACCA-T---T-C---GGTGGAT 52
Query 299 CTCTGAAGGTGTAAAAG-AGCTATGGAGAATGGGAAAAGAGACAGACAAGACATGGAAGT 357
|||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 53 CTCTGAAGTTGT-GAAGCAGCTATGGAGAATGGGAAAAGAGACAGACAAGAGATGGAAGT 111
Query 358 GAATACCACACCGAGGAAGCCTCGTGTACTACTCGCTGCAAGTGGAAGCGTCGCTGCTAT 417
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 112 GAATACCACACCGAGAAAGCCTCGTGTACTACTTGCTGCAAGTGGAAGTGTCGCTGCTAT 171
Query 418 CAAATTCGGCAATCTCTGCCATTGCTTCACCGAATGGGCAGAAGTCAGAGCCGTCGTTAC 477
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 172 CAAATTCGGCAATCTCTGCCATTGTTTCACCGAATGGGCAGAAGTGAGAGCCGTCGTTTC 231
Query 478 GAAATCATCTCTACATTTCCTCGATAAACTCTCTCTCCCACAAGAAGTGACTCTGTATAC 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAAATCATCTCTTCATTTCCTCGATAAACTCTCTCTCCCACAAGAAGTGACTCTGTATAC 291
Query 538 TGATGAAGATGAATGGTCTAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCT 597
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TGATGAAGATGAATGGTCAAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCT 351
Query 598 TAGACGTTGGGCTGATGTTTTAGTCATTGCTCCTTTGTCTGCTAACACCT-TAGGCAAGA 656
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 352 TAGACGTTGGGCTGATGTTTTAGTCATTGCTCCTTTGTCTGCTAACA-CTCTAGGCAAGA 410
Query 657 TTGCTGGTGGGCTTTGTGATAATCTTCTGACTTGCATTATACGAGCTTGGGACTATACCA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 411 TTGCTGGTGGGCTTTGTGATAATCTTCTGACTTGCATTATACGAGCTTGGGACTATAGCA 470
Query 717 AACCACTGTTTGTTGCTCCAGCTATGAATACTTTGATGTGGAACAATCCTTTCACTGAAA 776
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 471 AACCACTGTTTGTTGCACCAGCGATGAATACTTTGATGTGGAACAATCCTTTCACTGAAA 530
Query 777 GGCATCTTTTGTCTCTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGAC 836
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GGCATCTTTTGTCGCTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGA- 589
Query 837 TT-GCCTGTGGAGACTACGGTAATGGAGCTATGGCTGAGCCCTCTCTTATCTATTCCACT 895
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 590 TTGGCCTGTGGAGACTATGGTAATGGCGCTATGGCTGAGCCCTCTCTTATCTATTCCACT 649
Query 896 GTCAGACTCTTCTGGGAGTCTCAGGCTCATCAGCAAACCGGTGGAACTAGTTAAAACCAT 955
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 650 GTCAGACTCTTCTGGGAGTCTCAGGCTCATCAGCAAAGCGGTGGAACTAGTTAAA-CCAT 708
Query 956 GATTTCCACAACATGCATTTTGTGGAAAATCATCTGTTTTCACTATCTTAGATAATAGTA 1015
||| |||||||||||||| ||||||| | | | ||||||||||| |
Sbjct 709 GAT-----------GCATTTTGTGGAAA-TCATCTG----C--T-T-TTAGATAATAG-A 747
Query 1016 GATTTTATCAGTCTGTTTGCTTTTCTTGTACATCTCAAAATAGCTGTCTGGATTGATGTA 1075
|||||||| ||||| |||||||||||||||||| |||| |||||||||||| ||||
Sbjct 748 T-TTTTATCAATCTGTATGCTTTTCTTGTACATCTTTAAATGGCTGTCTGGATTCATGTG 806
Query 1076 TCTGGAGGACCATTTGCACTACTAGCTCCACTCTGTTTCTGTAGAAATGTCTATGTTTCT 1135
||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 807 TCTGGAGAACCATTTGCACTA---GCTCCACTCTGTTGCTGTAGAAATGTTTATGTTTCC 863
Query 1136 TTTCCTCGCTCTTAAATGTTGTCTT-CAATTCTGCTAATAGCTCACTGAACTTTTG 1190
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 864 TTTCCTCGCTCTTAAATGTTGTCTTTCAATTCTGCTTATAGCTCACTGAACTTTTG 919
> Ahg314295 jgi|Araly1|314295|fgenesh1_pm.C_scaffold_1003075
Length=1272
Score = 586 bits (317), Expect = 1e-166
Identities = 500/587 (85%), Gaps = 18/587 (3%)
Strand=Plus/Plus
Query 370 GAGGAAGCCTCGTGTAC-TACTCGCTGCAAGTGGAAGCGTCGCTGCTATCAAATTCGGCA 428
||||||||||||| | | |||| |||||||||||||| || ||||| || || ||| | |
Sbjct 693 GAGGAAGCCTCGTAT-CTTACTAGCTGCAAGTGGAAGTGTGGCTGCAATTAAGTTCAGTA 751
Query 429 ATCTCTGCCATTGCTTCACCGAATGGGCAGAAGTCAGAGCCGTCG-TTACGAAATCATCT 487
| ||||||||||| ||| | |||||||| ||||||| |||||| | || ||||| ||||
Sbjct 752 ACCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTTGCTT-CGAAAGCATCG 810
Query 488 CT-ACATTTCCTCGATAAA-CTCTCTCTCCCACAAGAAGTGACTCTGTATACTGATGAAG 545
|| | ||||| | |||||| || ||||| |||||||| |||||||| ||||| |||||||
Sbjct 811 CTGA-ATTTCGTTGATAAACCT-TCTCTTCCACAAGATGTGACTCTCTATACAGATGAAG 868
Query 546 ATGAATGGTCTAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCTTAGACGTT 605
||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 869 ATGAATGGTCTAGCTGGAACAAGATTGGTGATCCTGTGCTTCACATCGAGCTCAGACGCT 928
Query 606 GGGCTGATGTTTT-AGTCATTGCTCCTTTGTCTGCTAACACCTTAGGCAAGATTGCTGGT 664
||||||||||| | | ||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 929 GGGCTGATGTTATGA-TCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCTGGT 987
Query 665 GGGCTT-TGTGATAATCT-TCTGACTTGCATTA-TACGAGCTTGGGACTATACCAAACCA 721
||| || ||||||||||| | |||| || || | || |||| ||||| |||| ||||||
Sbjct 988 GGG-TTATGTGATAATCTAT-TGACATGTAT-AGTAAGAGCGTGGGATTATAACAAACCG 1044
Query 722 CTGTTTGTTGCTCCAGCTATGAATACTTTGATGTGGAACAATCCTTTCACTGAAAGGCAT 781
|||| ||||| || || ||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 1045 TTGTTCGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 1104
Query 782 CTTTTGTCT-CTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGACTTGC 840
||| ||| | |||||||||||||||||||| || |||||||| |||||||||| ||| ||
Sbjct 1105 CTTGTGT-TGCTTGATGAACTGGGAATCACTCTCATTCCTCCCATCAAGAAGAAACTGGC 1163
Query 841 CTGTGGAGACTACGGTAATGGAGCTATGGCTGAGCCCTCTCTTATCTATTCCACTGTCAG 900
||||||||| |||||||| || || ||||||||||| ||||| |||||||||||||| ||
Sbjct 1164 CTGTGGAGATTACGGTAACGGCGCAATGGCTGAGCCTTCTCTGATCTATTCCACTGTTAG 1223
Query 901 ACTCTTCTGGGAGTCTCAGGCTCATCAGCAAACCGGTGGAACTAGTT 947
||| ||||||||||| ||||||| | | |||| | |||||| ||||
Sbjct 1224 ACTGTTCTGGGAGTCACAGGCTCGTAAACAAAGTGATGGAACCAGTT 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5