BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18035.1
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479291 jgi|Araly1|479291|fgenesh2_kg.3__1992__AT3G18035.1 2109 0.0
Ahg474000 jgi|Araly1|474000|fgenesh2_kg.1__3954__AT1G48620.1 213 4e-54
> Ahg479291 jgi|Araly1|479291|fgenesh2_kg.3__1992__AT3G18035.1
Length=1875
Score = 2109 bits (1142), Expect = 0.0
Identities = 1703/1950 (87%), Gaps = 133/1950 (7%)
Strand=Plus/Plus
Query 11 aaaaatcaaaagagctctcagagc-aaa--aaacaaaaaaaaagaaaaaaaaaCCCTAAA 67
||||||||||||||||| |||||| ||| ||| |||||||||| |||||||||||||||
Sbjct 2 AAAAATCAAAAGAGCTCACAGAGCAAAACCAAAAAAAAAAAAAG-AAAAAAAACCCTAAA 60
Query 68 TCTAAATCTCACCTTCCACCTCTGTCttttttttttttgttcttttttttttttttACTG 127
||||||||||||||||| |||||| ||||||||||| || |||| ||||||||||||
Sbjct 61 TCTAAATCTCACCTTCCTCCTCTG---TTTTTTTTTTT-TT-TTTTCATTTTTTTTACTG 115
Query 128 TATCTTCTCTTCTCTTTGCTCTGCAAAAATCTCACATCCATGGATCCATCTCTTGGTGAT 187
||||| | | || || ||||||||||||||||||||||||||
Sbjct 116 ---------TTCTC--T--T-TG-------CT--CATCCATGGATCCATCTCTTGGTGAT 152
Query 188 CCTCATCATCCTCCTCAGTTCACCCCTTTTCC-TCATTTTCCCACCTCC-A--A--TC-- 239
||||||||||||||||||||||||||||| || || ||| ||||||||| | | ||
Sbjct 153 CCTCATCATCCTCCTCAGTTCACCCCTTTCCCTTC-TTTCCCCACCTCCAACCACTTCGT 211
Query 240 AT-------CAT-CCT--T-TAGGACCA-AAT-CCGT--ACAATAACCA-TGTCGTCTTC 283
| | | ||| | || | || || || | |||| ||| | | ||||||
Sbjct 212 CTCCGGCGCCGTCCCTGCTCTA-AATCATCATCCCTTCAACAACAACAACCAT-GTCTTC 269
Query 284 CAACCGCAGCCGCAAACGCAAACGCAAATCCCGCAACCG-CAGATGTTTCAGTTATCTCC 342
||||||||||||||||||| || | |||| |||||| | |||| ||||| | ||||
Sbjct 270 CAACCGCAGCCGCAAACGC-AA-G---TTCCC-CAACCGTC-GATGATTCAGGTCCCTCC 322
Query 343 ACATGTTTCAATGC-CCCACCCTCCTTACTCCGAAATGATTTGCGCTGCGATTGCGGCGT 401
||| | | || | |||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 323 ACA---TCCCAT-CAACCACCCTCCTTACTCCGAGATGATTTGCGCAGCGATTGCGGCGT 378
Query 402 TAAACGAACCGGATGGTTCGAGCAAGATGGCAATTTCGAGATACATCGAGAGATGTTA-C 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 379 TAAACGAACCGGATGGTTCGAGCAAGATGGCAATTTCGAGATACATCGAGAGATGTCATC 438
Query 461 ACCGGTTTAACTTCTGCTCATGCTGCTTTGTTGACTCACCATCTCAAGACTTTGAAGACC 520
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 439 -CCGGTTTAACTTCTGCTCATGCTGCTTTGTTGACTCATCATCTCAAGACTTTGAAGAAC 497
Query 521 AGTGGTGTTCTTTCTATGGTTAAGAAATCTTACAAAATTGCTGGTTCTTCTACTCCTCCT 580
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 498 AGTGGTGTTCTTACTATGGTTAAGAAATCTTACAAAATTGCTGGCTCTTCTACTCCTCCT 557
Query 581 GCTAGTGTAGCTGTTGCTGCTGCTGCCGCCGCTCAAGGTCTCGATGTTCCCAGATCTGAG 640
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 558 GCGAGTGTTGCTGTTGCTGCTGCTGCTGCCGCTCAAGGTCTCGATGTTCCCAGATCTGTG 617
Query 641 ATTCTCCATTC-A--AGTA--A----CAACGATCCCATGGCTTCTGGCTCTGCTTCTCAG 691
||||||| ||| | || | | |||||||||||||| ||| |||||||||||||
Sbjct 618 ATTCTCCCTTCAACTAGCAGCACCGTCAACGATCCCATGG---CTGTCTCTGCTTCTCAG 674
Query 692 CCTCTGAAACGAGGTCGTGGTCGTCCTCCTAAGCCTAAACCTGAATCTCAACCACAACCA 751
|||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||| |
Sbjct 675 CCTCTGAAACGAGGTCGTGGTCGTCCTCCTAAACCTAAACCCGAAGGTCAACAACAACAA 734
Query 752 CTACAGCAACTTCCACCGACC-AATCAAGTCCAGGCTAACGGACAGCCAATCTGGGAACA 810
| || ||| | | | | || | |||||||||| |||||||||||||||||||| ||||
Sbjct 735 C-CCATCAA--TGCTCAG-CCTATTCAAGTCCAGTCTAACGGACAGCCAATCTGGCAACA 790
Query 811 GCAGCAAGTTCAATC-ACCTGTTCCGGTTCCGACTCCGGTTACAGAGTCGGCGAAGAGAG 869
||||||||| ||| | |||||| | |||||| ||| ||||| |||||||| |||||||
Sbjct 791 GCAGCAAGTCCAA-CTACCTGTGACTGTTCCGGTTCCTGTTACGGAGTCGGCTAAGAGAG 849
Query 870 GACCTGGTCGTCCAAGGAAGAACGGTTCTGCTGCTCCTGCTACTGCACCAATCGTTCAAG 929
||||||||||||||||||||||||| |||||| ||| | |||||||||||| ||||
Sbjct 850 GACCTGGTCGTCCAAGGAAGAACGG---AGCTGCTGCTG-T--TGCACCAATCGTGCAAG 903
Query 930 CTTCGGTTATGGCTGGAATTATGAAACGTAGAGGTAGACCACCGGGTCGTCGAGCTGCTG 989
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 904 CTTCGGTTATGGCTGGAATCATGAAACGTAGAGGTAGACCACCAGGTCGTAGAGCTGCTG 963
Query 990 GGAGACAGAGGAAGCCCAAATCCGTTTCTTCTACTGCCTCTGTGTATCCTTATGTTGCTA 1049
|||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||||||||
Sbjct 964 GGAGACAGAGGAAGCCTAAATCTGTTTCTGCTACTGCTTCTGTGTATCCGTATGTTGCTA 1023
Query 1050 ATGGTGCTAGACGCAGAGGAAGGCCTAGGAGAGTTGTTGACCCTAGCAGTATTGTTAGTG 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1024 ATGGTGCTAGACGCAGAGGAAGGCCTAGGAGAGTTGTTGACCCTAGCAGTATCGTTACCG 1083
Query 1110 TTGCTCCAGTAGGTGGTGAAAATGTGGCAGCGGTTGCGCCAGGG-ATGAAGCGTGGACGT 1168
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1084 TTGCTCCAGTAGGTGGTGAAAATGTGGCAGCGGTTGCGCC-GGGAATGAAGCGTGGACGA 1142
Query 1169 GGACGACCACCTAAGATTGGTGGTGTTATCAGTAGGCTTATTATGAAGCCTAAGAGAGGA 1228
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1143 GGACGACCACCGAAGATTGGTGGTGTTATCAGTAGGC---TTATGAAGCCTAAGAGAGGA 1199
Query 1229 CGAGGACGTCCTGTAGGTAGACCCAGAAAGATTGGAACATCAGTCACGACTGGGACACAA 1288
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 1200 CGAGGACGTCCTGTAGGTAGACCCAGAAAGTTTGCAACATCAGTCACGACTGGGGCACAA 1259
Query 1289 GATTCTGGAGAACTCAAGAAGAAGTTTGATATTTTTCAAGAGAAAGTGAAAGAAATTGTG 1348
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 1260 GATTCTGGAGAACTCAAGAAAAAGTTTGATATTTTTCAAGAGAAAGTAAAAGAAATCGTG 1319
Query 1349 AAGGTGTTGAAGGATGGAGTTACAAGTGAGAATCAAGCAGTGGTGCAAGCCATAAAAGAT 1408
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1320 AAGGTGTTGAAAGATGGAGTTACAAGCGAGAATCAAGCAGTGGTGCAAGCCATAAAAGAT 1379
Query 1409 CTGGAAGCACTAACAGTGACGGAGACCGTTG---AGCCACAAGTTATGGAAGAAGTGCAG 1465
|||||||||||||||||||||||||| |||| ||||||| || |||||||||||||
Sbjct 1380 CTGGAAGCACTAACAGTGACGGAGACGGTTGTTGAGCCACAGGT---GGAAGAAGTGCAG 1436
Query 1466 CCAGAGGAGACTGCAGCACCACAGACTGAAGCTCAACAAACTGAAGCTGCTgagacacaa 1525
|||||||||||||| | ||| | ||||||||| ||||||||||| ||||||
Sbjct 1437 CCAGAGGAGACTGCTGAACCGCTCACTGAAGCT---------GAAGCTGCTGAAACACAA 1487
Query 1526 ggaggacaagaagaaggacaagaaagagaaggag-a-aa-cacagacccagacagaagca 1582
|||||||| ||||| ||||||||||||||||||| | || ||||||| ||||||||||||
Sbjct 1488 GGAGGACAGGAAGAGGGACAAGAAAGAGAAGGAGGAGAAACACAGACTCAGACAGAAGCA 1547
Query 1583 gaggcaatgcaagaagCTCTGTTCTGAAGAATAATAATGATCTAGAAAACAACCTAGACA 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GAGGCAATGCAAGAAGCTCTGTTCTGAAGAATAATAATGATCTAGAAAACAACCTAGACA 1607
Query 1643 TAATAGCCTTGGTGTTTGGCGTTAGGAGT-GtttttttttAGTTGTTTTAGGTGTTGGAA 1701
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1608 TAATAGCCTTGGTGTTTGGCGTTAGGAGGAGTGTTTTTTTAGTTAATTTAGGTGTTGGA- 1666
Query 1702 TCGCATCTTAAATTATATAAAAA----TCTATAAGGAATTTTAATTTTTCT---AGGTTT 1754
||| ||||||||||| | ||||| |||||| ||||||||||||||| | |||||
Sbjct 1667 TCGTATCTTAAATTAAAAAAAAAAAAATCTATATGGAATTTTAATTTTTTTTGTAGGTTA 1726
Query 1755 TGTTGTCTGCAGAAGAAGAAATAGTAGACTCGTTAATGGTGTTGTTGTCGGTGTGTCTTT 1814
||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 1727 TGTTGTCTGCAAAAGAAGAAACAGTAGGCTCGTTAATGGTGTTGTTGTCGGTATGTCTTT 1786
Query 1815 AACCAAACCAT-AAGACGTGGCTGTAAATTAGCGATGTTTCTAGTCTTCCATCTTTAATA 1873
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1787 AACCAAAC-ATTAAGACGTGGCTGTAAATTAGCGATGTTTCTAGTGTTCCATCTTTAATA 1845
Query 1874 ATCTCTTATTGCGTCTGTGCCTTTGTTTTT 1903
||||||||||||||| ||||||||| ||||
Sbjct 1846 ATCTCTTATTGCGTCCGTGCCTTTGGTTTT 1875
> Ahg474000 jgi|Araly1|474000|fgenesh2_kg.1__3954__AT1G48620.1
Length=1913
Score = 213 bits (115), Expect = 4e-54
Identities = 203/243 (84%), Gaps = 15/243 (6%)
Strand=Plus/Plus
Query 357 CCCACCCTCCTTACTCCGAAATGATTTGCGCTGCGATTGCGGCGTTAAACGAACCGGATG 416
|||||||||||||||| || |||||||| | |||||||| |||||||||||||| ||||
Sbjct 286 CCCACCCTCCTTACTCTGACATGATTTGTACGGCGATTGCAGCGTTAAACGAACCAGATG 345
Query 417 GTTCGAGCAAG-ATGGCAATTTCGAGATACATCGAGAG-ATGTTACAC-CGGTTTAACTT 473
| || |||||| | || |||||||| |||||||| || || |||||| || || ||
Sbjct 346 GGTCAAGCAAGCA-AGCGATTTCGAGGTACATCGAAAGAAT-TTACACTGGGATT-CCTA 402
Query 474 CTGCTCATGCTGCTTTGTTGACTCACCATCTCAAGACTTTGAAGACCAGTGGTG-TTCTT 532
||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 403 CTGCTCATGGAGCTTTGTTGACACACCATCTCAAGACTTTGAAGACCAGTGG-GATTCTT 461
Query 533 -TCTATGGTTAAGAAATCTTACAAAATT-GCTGGTTCTTCTACTCCTCCTGCTAGTGTAG 590
| |||||||||||||||||||| || ||| | || || |||||||| |||||||||
Sbjct 462 ATG-ATGGTTAAGAAATCTTACAAG-TTAGCT--T-CTACTCCTCCTCCTACTAGTGTAG 516
Query 591 CTG 593
|||
Sbjct 517 CTG 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71495389865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5