BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18040.1
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929670 jgi|Araly1|929670|scaffold_302127.1 2584 0.0
Ahg476507 jgi|Araly1|476507|fgenesh2_kg.2__1637__AT1G73670.1 784 0.0
Ahg904771 jgi|Araly1|904771|Al_scaffold_0003_1899 89.8 7e-17
> Ahg929670 jgi|Araly1|929670|scaffold_302127.1
Length=1578
Score = 2584 bits (1399), Expect = 0.0
Identities = 1496/1542 (97%), Gaps = 9/1542 (1%)
Strand=Plus/Plus
Query 98 AGGTTGCACTGGAGACTGAGTTCTTTACAGAATACGGTGAAGCTAGCCGATACCAAATCC 157
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 42 AGGTTGCACTGGAGACTGAGTTCTTTACAGAATACGGTGAAGCCAGCCGATACCAAATCC 101
Query 158 AAGAAGTTATAGGGAAAGGAAGTTACGGTGTTGTGGCATCTGCAATCGACACACATTCAG 217
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 102 AAGAAGTTATAGGGAAAGGAAGTTACGGGGTTGTGGCATCTGCAATTGACACACATTCAG 161
Query 218 GCGAAAAGGTTGCCATTAAGAAAATCAATGATGTGTTTGAGCACGTCTCTGATGCAACGC 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GCGAAAAGGTTGCCATTAAGAAAATCAATGATGTGTTTGAGCACGTCTCTGATGCAACGC 221
Query 278 GGATTCTAAGAGAGATCAAGCTTCTCAGGTTGCTCCGCCATCCTGATATAGTGGAGATAA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GGATTCTAAGAGAGATCAAGCTTCTCAGGTTGCTCCGCCATCCTGATATAGTGGAGATAA 281
Query 338 AGCATGTAATGCTTCCTCCTTCACGCCGTGAGTTCAGAGACATTTATGTTGTTTTCGAGT 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AGCATGTAATGCTTCCTCCTTCACGCCGTGAGTTCAGAGACATTTATGTTGTTTTCGAGC 341
Query 398 TGATGGAATCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACT 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TGATGGAATCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACT 401
Query 458 ACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTCATACACACAGCTAATGTGT 517
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 402 ACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTTATACACACAGCTAATGTGT 461
Query 518 TTCATCGTGATTTGAAGCCTAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTT 577
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 462 TTCATCGTGATTTGAAGCCTAAAAATATTCTAGCTAACTCTGATTGCAAGTTGAAGATTT 521
Query 578 GCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTG 637
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 522 GCGACTTTGGGCTTGCTCGAGTCTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTG 581
Query 638 ACTATGTTGCTACAAGATGGTACCGTGCGCCAGAACTTTGTGGCTCTTTCTTCTCCAAAT 697
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 582 ACTATGTTGCTACAAGATGGTACCGTGCACCGGAACTTTGTGGCTCTTTCTTCTCCAAAT 641
Query 698 ATACTCCTGCCATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTCACTGGGA 757
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 642 ATACTCCTGCGATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTTACTGGGA 701
Query 758 AGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTG 761
Query 818 GTACTCCTCCTCCCGAAGCTATTGCAAGGATTCGTAATGAAAAGGCGAGGAGATATCTCG 877
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 762 GTACTCCTCCTCCCGAAGCTATTTCAAGGATTCGTAATGAAAAGGCGAGGAGGTATCTCG 821
Query 878 GCAATATGAGGAGAAAACCGCCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCAT 937
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 822 GCAATATGAGGAGAAAACCACCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCGT 881
Query 938 TGGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCCCT-CAGCT 996
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 882 TGGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCC-TACAGCT 940
Query 997 GAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGTTGATCGGGAACCATCT 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 GAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGTTGATCGGGAACCATCT 1000
Query 1057 ACTCAACCGATTCCGAAACTCGAGTTTGAGTTTGAAAGAAGGAAGATAACAAAAGAAGAT 1116
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1001 ACTCAACCGATTCCAAAACTCGAGTTTGAGTTTGAAAGAAGGAAGATTACAAAAGAAGAT 1060
Query 1117 GTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGCTGCAAGAATAT 1176
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1061 GTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGTTGCAAGAATAT 1120
Query 1177 CTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAGTGGTGTTGATCGCTTTAAGAGA 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAGTGGTGTTGATCGCTTTAAGAGA 1180
Query 1237 CAATTTGCTCATCTTGAGGAAAATTACGGTAAGGGTGAGAAAGGCTCACCTCTTCAACGC 1296
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1181 CAATTTGCTCATCTTGAGGAAAATTACGGTAAGGGTGAGAGAGGCTCACCTCTTCAACGG 1240
Query 1297 CAACACGCTTCCTTGCCTAGAGAGCGAGTCCCTGCTCCTAAGAAAGAGAATGGATCACAT 1356
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1241 CAACACGCTTCTTTGCCTAGGGAGAGAGTCCCTGCTCCTAAGAAAGAGAATGGATCACAT 1300
Query 1357 AATCACGATATCGAGAACAGATCCATAGCGTCTTTAGTCACGACCCTCGAAAGCCCTCCA 1416
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1301 AATCACGATATCGAGAACAGATCCACAGCGTCTTTAGCCACGACCCTCGAAAGCCCTCCA 1360
Query 1417 ACGTCACAACACGAGGGGTCAGACTACAGGAATGG-GACGAGCCAGACGGGTTACAGCGC 1475
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| ||
Sbjct 1361 ACGTCACAACACGAGGGTTCAGACTACAGGAATGGAGT-GAGCCAGACGGGTTACAGTGC 1419
Query 1476 TCGCAGCTTGCTGAAAAGTGCCAGCATCAGTGCATCTAAATGCATTGGCATGAAACCAAG 1535
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1420 TCGCAGCTTGCTGAAAAGTGCCAGCATCAGTGCATCTAAATGCATTGGCGTGAAACAAAG 1479
Query 1536 AAACAAGTCCGAGTACGGGGAATCAAACAATGATACGGTTGATGCTCTGTCTCAAAAGGT 1595
||||||||||||| | || ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1480 AAACAAGTCCGAGCAAGGTGAATCGAACAATGATACGGTTGATGCTTTGTCTCAAAAGGT 1539
Query 1596 CGCGGCTCTCCACACTTGACTTGTTTCAGAGATTGAGGATTG 1637
|||||||||||||||||| || ||||||||| ||||||
Sbjct 1540 TGCGGCTCTCCACACTTGA-TT----CAGAGATTGGGGATTG 1576
> Ahg476507 jgi|Araly1|476507|fgenesh2_kg.2__1637__AT1G73670.1
Length=2149
Score = 784 bits (424), Expect = 0.0
Identities = 988/1256 (79%), Gaps = 56/1256 (4%)
Strand=Plus/Plus
Query 113 CTGAGTTCTTTACAGAATACGGTGAAGCTAGCCGATACCAAATCCAAGAAGTTATAGGGA 172
|||| ||||| || || || || ||||| | | || || || ||||||||| | || |
Sbjct 393 CTGAATTCTTCACGGAGTATGGAGAAGCAAATAGGTATCAGATTCAAGAAGTTGTTGGCA 452
Query 173 AAGGAAGTTACGGTGTTG-TGGCATCTGCAATCGACACACATTCAGGCGAAAAG-GTTGC 230
||||||| || || |||| ||| ||||| || || || || | || | |||| |||||
Sbjct 453 AAGGAAGCTATGGAGTTGTTGG-TTCTGCTATAGATACTCACACTGGAG-AAAGAGTTGC 510
Query 231 CATTAAGAAAATCAATGATGTGTTT-GAGCACGTCTCTGATGCAACGCGGATTCTAAGAG 289
|| ||||| ||||||||||| ||| || || ||||||||||||| ||||||| || |
Sbjct 511 TATCAAGAAGATCAATGATGT-TTTCGATCATATCTCTGATGCAACTAGGATTCTTAGGG 569
Query 290 AGATCAAGCTT-CT-CAGGTTGCTCCGCCATCCTGATATAGTGGAGATAAAGCATGTAAT 347
|||| ||| || | | | ||||| | ||||| ||| | |||||||| |||||| | ||
Sbjct 570 AGATTAAG-TTGTTGC-GTTTGCTTCTTCATCCAGATGTTGTGGAGATTAAGCATATCAT 627
Query 348 GCTTCCTCCTTCACGCCGTGAG-TTCAGAGACATTTATGTTGT-TTTCGAGTTGATGGAA 405
|||||||||||| || | ||| ||| | || |||||||||| ||| ||||||||||||
Sbjct 628 GCTTCCTCCTTCTCGAAGAGAGTTTC-GTGATGTTTATGTTGTGTTT-GAGTTGATGGAA 685
Query 406 TCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTT-ACACCTGAGCACT-ACCAGT 463
|| |||||||| || || || || || || |||||| || || |||||||| | | ||||
Sbjct 686 TCTGATCTTCATCAGGTGATTAAAGCTAATGATGAT-TTAACTCCTGAGCA-TCATCAGT 743
Query 464 TTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGT-TCATACACACAGCTAATGTGTTTCAT 522
||||| | || |||||||| |||||| |||||| | | || | || ||||||||||||
Sbjct 744 TTTTCTTGTATCAGCTTCTCCGTGGTTTGAAGTAT-GTTCATGCTGCGAATGTGTTTCAT 802
Query 523 CGTGATTTGAAGCCTAAA-AATATTCTAGCCAACT-CTGATTGCAAGTTGAAGATTTGCG 580
|| |||||||| || ||| || ||||| ||||| | |||||||||| ||||||||||| |
Sbjct 803 CGGGATTTGAAACC-AAAGAACATTCTTGCCAA-TGCTGATTGCAAATTGAAGATTTGTG 860
Query 581 ACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTGACT 640
||||||| || ||||| ||||| ||||||||||| ||| | ||||| || ||||||||||
Sbjct 861 ACTTTGGTCTAGCTCGTGTGTCTTTTAATGATGCCCCTACCGCTATTTTTTGGACTGACT 920
Query 641 ATGTTGCTACAAGATGGTACCGTGCGCCAGAACTTTGTGGCT-CTTTCTTCTCCAAATAT 699
|||||||||| | ||||| ||||| || ||||| ||||| | |||| ||||| ||||||
Sbjct 921 ATGTTGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCCTTT-TTCTCAAAATAT 979
Query 700 ACTCCTGCCATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTCACT-GGGAA 758
|| ||||| |||||||| |||||| | || ||||||||||| |||||||| | |||||
Sbjct 980 ACCCCTGCGATTGATATTTGGAGCGTCGGTTGCATATTTGCTGAAATGCT-TTTAGGGAA 1038
Query 759 GCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTGG 818
||| || |||||||| || || || || |||||||||||||||||||| ||||| |||||
Sbjct 1039 GCCGTTATTTCCTGGCAAAAACGTTGTTCACCAATTGGATATTATGACCGATTTTCTTGG 1098
Query 819 TACTCCTCCTCCCGAAGCTAT-TGCAAGGATTC-GTAATGAAAAGGCGAGGAGATATCTC 876
||||| || || ||||| || | ||| || || | ||||| |||||||||||||||||
Sbjct 1099 CACTCCACCACCTGAAGCAATAT-CAAAGA-TCAGAAATGATAAGGCGAGGAGATATCTT 1156
Query 877 GGCAATATGAGGAGAAAACCGCCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCA 936
||||| ||||| | ||||| |||||| |||||| || | ||||| ||| | | ||| ||
Sbjct 1157 GGCAACATGAGAAAAAAACAGCCAGTCCCATTCTCTAAAAAATTCCCTAAAGCAGATCC- 1215
Query 937 TT-GGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCCCTCAGC 995
|| ||||| ||| | || | || || |||| |||||||| ||||| ||||| || ||
Sbjct 1216 TTCTGCCCTCCGCCTGTTGGAACGCCTGATTGCCTTTGATCCAAAAGATCGTCCATCTGC 1275
Query 996 TGAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGT--TGATCGGGAACCA 1053
||||| ||| | | ||||| |||||| |||||||| | || || || |||||||||
Sbjct 1276 CGAAGAAGCATTAACTGATCCATACTTCAATGGTCTGTC-AA-GTAAAGAGCGGGAACCA 1333
Query 1054 TCTACTCAACCGATTCCGAAA-CTCGAGTTTGAGTTTGAAAGAAGGAAGA-TAACAAAAG 1111
|| || || |||||| | ||| || || ||||||||||| |||| ||| | | |||||||
Sbjct 1334 TCGACACAGCCGATTTC-AAAGCTTGAATTTGAGTTTGAGAGAAAGAA-ATTGACAAAAG 1391
Query 1112 AAGATGTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGCTGCAAG 1171
| ||| | ||||| || || ||| |||||||||||||||||||||||||||||||| | |
Sbjct 1392 ATGATATCAGAGAGTTAATTTACCGAGAGATATTAGAGTATCATCCTCAGATGCTGGAGG 1451
Query 1172 AATATCTTCGAGGTGGAGAA-CAGACT-AGCTTCATGTACCCAAGTGGTGTTGATCGCTT 1229
|||| ||||| ||||| || ||| || |||||||||||||| ||||| || ||||| ||
Sbjct 1452 AATACCTTCGTGGTGGC-AATCAG-CTCAGCTTCATGTACCCCAGTGGGGTAGATCGATT 1509
Query 1230 TAAGAGACAATTTGCTCATCTTGAGGAAAATTACGGTA-AGG-GTGAGAAAGGCTCAC-C 1286
| ||| || ||||||||||| || |||||| | ||| ||| | || |||| | || |
Sbjct 1510 TCGGAGGCAGTTTGCTCATCTCGAAGAAAATCAAGGTCTAGGAG-GAAAAAG--TAACGC 1566
Query 1287 TCTTCA-ACGCCAACACGCTTCCTTGCCTAGAGAGCGAGTCCCTGC-TCCTAAGAA 1340
||||| | | || || |||||||| || ||||||||||| ||||| ||| |||||
Sbjct 1567 ACTTCAGA-GACAGCATGCTTCCTTACCAAGAGAGCGAGTTCCTGCATCC-AAGAA 1620
> Ahg904771 jgi|Araly1|904771|Al_scaffold_0003_1899
Length=339
Score = 89.8 bits (48), Expect = 7e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1 GCGAAAAGTTTCTCCCTTGTTAGAGATTTTGATTTGTCTGGTTTGAACTGCATTAGG 57
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GCGAAAAGTTTCGGACTTGTTAGAGATTTTGATTTGTCTGGTTTGAACTGCATTAGG 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72485736235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5