BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18040.1 Length=1929 Score E Sequences producing significant alignments: (Bits) Value Ahg929670 jgi|Araly1|929670|scaffold_302127.1 2584 0.0 Ahg476507 jgi|Araly1|476507|fgenesh2_kg.2__1637__AT1G73670.1 784 0.0 Ahg904771 jgi|Araly1|904771|Al_scaffold_0003_1899 89.8 7e-17 > Ahg929670 jgi|Araly1|929670|scaffold_302127.1 Length=1578 Score = 2584 bits (1399), Expect = 0.0 Identities = 1496/1542 (97%), Gaps = 9/1542 (1%) Strand=Plus/Plus Query 98 AGGTTGCACTGGAGACTGAGTTCTTTACAGAATACGGTGAAGCTAGCCGATACCAAATCC 157 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 42 AGGTTGCACTGGAGACTGAGTTCTTTACAGAATACGGTGAAGCCAGCCGATACCAAATCC 101 Query 158 AAGAAGTTATAGGGAAAGGAAGTTACGGTGTTGTGGCATCTGCAATCGACACACATTCAG 217 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 102 AAGAAGTTATAGGGAAAGGAAGTTACGGGGTTGTGGCATCTGCAATTGACACACATTCAG 161 Query 218 GCGAAAAGGTTGCCATTAAGAAAATCAATGATGTGTTTGAGCACGTCTCTGATGCAACGC 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 GCGAAAAGGTTGCCATTAAGAAAATCAATGATGTGTTTGAGCACGTCTCTGATGCAACGC 221 Query 278 GGATTCTAAGAGAGATCAAGCTTCTCAGGTTGCTCCGCCATCCTGATATAGTGGAGATAA 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 GGATTCTAAGAGAGATCAAGCTTCTCAGGTTGCTCCGCCATCCTGATATAGTGGAGATAA 281 Query 338 AGCATGTAATGCTTCCTCCTTCACGCCGTGAGTTCAGAGACATTTATGTTGTTTTCGAGT 397 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 AGCATGTAATGCTTCCTCCTTCACGCCGTGAGTTCAGAGACATTTATGTTGTTTTCGAGC 341 Query 398 TGATGGAATCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACT 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 TGATGGAATCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACT 401 Query 458 ACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTCATACACACAGCTAATGTGT 517 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 402 ACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTTATACACACAGCTAATGTGT 461 Query 518 TTCATCGTGATTTGAAGCCTAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTT 577 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 462 TTCATCGTGATTTGAAGCCTAAAAATATTCTAGCTAACTCTGATTGCAAGTTGAAGATTT 521 Query 578 GCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTG 637 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 522 GCGACTTTGGGCTTGCTCGAGTCTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTG 581 Query 638 ACTATGTTGCTACAAGATGGTACCGTGCGCCAGAACTTTGTGGCTCTTTCTTCTCCAAAT 697 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 582 ACTATGTTGCTACAAGATGGTACCGTGCACCGGAACTTTGTGGCTCTTTCTTCTCCAAAT 641 Query 698 ATACTCCTGCCATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTCACTGGGA 757 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 642 ATACTCCTGCGATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTTACTGGGA 701 Query 758 AGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTG 817 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 AGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTG 761 Query 818 GTACTCCTCCTCCCGAAGCTATTGCAAGGATTCGTAATGAAAAGGCGAGGAGATATCTCG 877 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 762 GTACTCCTCCTCCCGAAGCTATTTCAAGGATTCGTAATGAAAAGGCGAGGAGGTATCTCG 821 Query 878 GCAATATGAGGAGAAAACCGCCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCAT 937 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 822 GCAATATGAGGAGAAAACCACCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCGT 881 Query 938 TGGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCCCT-CAGCT 996 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 882 TGGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCC-TACAGCT 940 Query 997 GAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGTTGATCGGGAACCATCT 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 941 GAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGTTGATCGGGAACCATCT 1000 Query 1057 ACTCAACCGATTCCGAAACTCGAGTTTGAGTTTGAAAGAAGGAAGATAACAAAAGAAGAT 1116 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1001 ACTCAACCGATTCCAAAACTCGAGTTTGAGTTTGAAAGAAGGAAGATTACAAAAGAAGAT 1060 Query 1117 GTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGCTGCAAGAATAT 1176 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1061 GTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGTTGCAAGAATAT 1120 Query 1177 CTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAGTGGTGTTGATCGCTTTAAGAGA 1236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1121 CTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAGTGGTGTTGATCGCTTTAAGAGA 1180 Query 1237 CAATTTGCTCATCTTGAGGAAAATTACGGTAAGGGTGAGAAAGGCTCACCTCTTCAACGC 1296 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1181 CAATTTGCTCATCTTGAGGAAAATTACGGTAAGGGTGAGAGAGGCTCACCTCTTCAACGG 1240 Query 1297 CAACACGCTTCCTTGCCTAGAGAGCGAGTCCCTGCTCCTAAGAAAGAGAATGGATCACAT 1356 ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1241 CAACACGCTTCTTTGCCTAGGGAGAGAGTCCCTGCTCCTAAGAAAGAGAATGGATCACAT 1300 Query 1357 AATCACGATATCGAGAACAGATCCATAGCGTCTTTAGTCACGACCCTCGAAAGCCCTCCA 1416 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1301 AATCACGATATCGAGAACAGATCCACAGCGTCTTTAGCCACGACCCTCGAAAGCCCTCCA 1360 Query 1417 ACGTCACAACACGAGGGGTCAGACTACAGGAATGG-GACGAGCCAGACGGGTTACAGCGC 1475 ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| || Sbjct 1361 ACGTCACAACACGAGGGTTCAGACTACAGGAATGGAGT-GAGCCAGACGGGTTACAGTGC 1419 Query 1476 TCGCAGCTTGCTGAAAAGTGCCAGCATCAGTGCATCTAAATGCATTGGCATGAAACCAAG 1535 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1420 TCGCAGCTTGCTGAAAAGTGCCAGCATCAGTGCATCTAAATGCATTGGCGTGAAACAAAG 1479 Query 1536 AAACAAGTCCGAGTACGGGGAATCAAACAATGATACGGTTGATGCTCTGTCTCAAAAGGT 1595 ||||||||||||| | || ||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1480 AAACAAGTCCGAGCAAGGTGAATCGAACAATGATACGGTTGATGCTTTGTCTCAAAAGGT 1539 Query 1596 CGCGGCTCTCCACACTTGACTTGTTTCAGAGATTGAGGATTG 1637 |||||||||||||||||| || ||||||||| |||||| Sbjct 1540 TGCGGCTCTCCACACTTGA-TT----CAGAGATTGGGGATTG 1576 > Ahg476507 jgi|Araly1|476507|fgenesh2_kg.2__1637__AT1G73670.1 Length=2149 Score = 784 bits (424), Expect = 0.0 Identities = 988/1256 (79%), Gaps = 56/1256 (4%) Strand=Plus/Plus Query 113 CTGAGTTCTTTACAGAATACGGTGAAGCTAGCCGATACCAAATCCAAGAAGTTATAGGGA 172 |||| ||||| || || || || ||||| | | || || || ||||||||| | || | Sbjct 393 CTGAATTCTTCACGGAGTATGGAGAAGCAAATAGGTATCAGATTCAAGAAGTTGTTGGCA 452 Query 173 AAGGAAGTTACGGTGTTG-TGGCATCTGCAATCGACACACATTCAGGCGAAAAG-GTTGC 230 ||||||| || || |||| ||| ||||| || || || || | || | |||| ||||| Sbjct 453 AAGGAAGCTATGGAGTTGTTGG-TTCTGCTATAGATACTCACACTGGAG-AAAGAGTTGC 510 Query 231 CATTAAGAAAATCAATGATGTGTTT-GAGCACGTCTCTGATGCAACGCGGATTCTAAGAG 289 || ||||| ||||||||||| ||| || || ||||||||||||| ||||||| || | Sbjct 511 TATCAAGAAGATCAATGATGT-TTTCGATCATATCTCTGATGCAACTAGGATTCTTAGGG 569 Query 290 AGATCAAGCTT-CT-CAGGTTGCTCCGCCATCCTGATATAGTGGAGATAAAGCATGTAAT 347 |||| ||| || | | | ||||| | ||||| ||| | |||||||| |||||| | || Sbjct 570 AGATTAAG-TTGTTGC-GTTTGCTTCTTCATCCAGATGTTGTGGAGATTAAGCATATCAT 627 Query 348 GCTTCCTCCTTCACGCCGTGAG-TTCAGAGACATTTATGTTGT-TTTCGAGTTGATGGAA 405 |||||||||||| || | ||| ||| | || |||||||||| ||| |||||||||||| Sbjct 628 GCTTCCTCCTTCTCGAAGAGAGTTTC-GTGATGTTTATGTTGTGTTT-GAGTTGATGGAA 685 Query 406 TCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTT-ACACCTGAGCACT-ACCAGT 463 || |||||||| || || || || || || |||||| || || |||||||| | | |||| Sbjct 686 TCTGATCTTCATCAGGTGATTAAAGCTAATGATGAT-TTAACTCCTGAGCA-TCATCAGT 743 Query 464 TTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGT-TCATACACACAGCTAATGTGTTTCAT 522 ||||| | || |||||||| |||||| |||||| | | || | || |||||||||||| Sbjct 744 TTTTCTTGTATCAGCTTCTCCGTGGTTTGAAGTAT-GTTCATGCTGCGAATGTGTTTCAT 802 Query 523 CGTGATTTGAAGCCTAAA-AATATTCTAGCCAACT-CTGATTGCAAGTTGAAGATTTGCG 580 || |||||||| || ||| || ||||| ||||| | |||||||||| ||||||||||| | Sbjct 803 CGGGATTTGAAACC-AAAGAACATTCTTGCCAA-TGCTGATTGCAAATTGAAGATTTGTG 860 Query 581 ACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTGACT 640 ||||||| || ||||| ||||| ||||||||||| ||| | ||||| || |||||||||| Sbjct 861 ACTTTGGTCTAGCTCGTGTGTCTTTTAATGATGCCCCTACCGCTATTTTTTGGACTGACT 920 Query 641 ATGTTGCTACAAGATGGTACCGTGCGCCAGAACTTTGTGGCT-CTTTCTTCTCCAAATAT 699 |||||||||| | ||||| ||||| || ||||| ||||| | |||| ||||| |||||| Sbjct 921 ATGTTGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCCTTT-TTCTCAAAATAT 979 Query 700 ACTCCTGCCATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTCACT-GGGAA 758 || ||||| |||||||| |||||| | || ||||||||||| |||||||| | ||||| Sbjct 980 ACCCCTGCGATTGATATTTGGAGCGTCGGTTGCATATTTGCTGAAATGCT-TTTAGGGAA 1038 Query 759 GCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTGG 818 ||| || |||||||| || || || || |||||||||||||||||||| ||||| ||||| Sbjct 1039 GCCGTTATTTCCTGGCAAAAACGTTGTTCACCAATTGGATATTATGACCGATTTTCTTGG 1098 Query 819 TACTCCTCCTCCCGAAGCTAT-TGCAAGGATTC-GTAATGAAAAGGCGAGGAGATATCTC 876 ||||| || || ||||| || | ||| || || | ||||| ||||||||||||||||| Sbjct 1099 CACTCCACCACCTGAAGCAATAT-CAAAGA-TCAGAAATGATAAGGCGAGGAGATATCTT 1156 Query 877 GGCAATATGAGGAGAAAACCGCCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCA 936 ||||| ||||| | ||||| |||||| |||||| || | ||||| ||| | | ||| || Sbjct 1157 GGCAACATGAGAAAAAAACAGCCAGTCCCATTCTCTAAAAAATTCCCTAAAGCAGATCC- 1215 Query 937 TT-GGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCCCTCAGC 995 || ||||| ||| | || | || || |||| |||||||| ||||| ||||| || || Sbjct 1216 TTCTGCCCTCCGCCTGTTGGAACGCCTGATTGCCTTTGATCCAAAAGATCGTCCATCTGC 1275 Query 996 TGAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGT--TGATCGGGAACCA 1053 ||||| ||| | | ||||| |||||| |||||||| | || || || ||||||||| Sbjct 1276 CGAAGAAGCATTAACTGATCCATACTTCAATGGTCTGTC-AA-GTAAAGAGCGGGAACCA 1333 Query 1054 TCTACTCAACCGATTCCGAAA-CTCGAGTTTGAGTTTGAAAGAAGGAAGA-TAACAAAAG 1111 || || || |||||| | ||| || || ||||||||||| |||| ||| | | ||||||| Sbjct 1334 TCGACACAGCCGATTTC-AAAGCTTGAATTTGAGTTTGAGAGAAAGAA-ATTGACAAAAG 1391 Query 1112 AAGATGTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGCTGCAAG 1171 | ||| | ||||| || || ||| |||||||||||||||||||||||||||||||| | | Sbjct 1392 ATGATATCAGAGAGTTAATTTACCGAGAGATATTAGAGTATCATCCTCAGATGCTGGAGG 1451 Query 1172 AATATCTTCGAGGTGGAGAA-CAGACT-AGCTTCATGTACCCAAGTGGTGTTGATCGCTT 1229 |||| ||||| ||||| || ||| || |||||||||||||| ||||| || ||||| || Sbjct 1452 AATACCTTCGTGGTGGC-AATCAG-CTCAGCTTCATGTACCCCAGTGGGGTAGATCGATT 1509 Query 1230 TAAGAGACAATTTGCTCATCTTGAGGAAAATTACGGTA-AGG-GTGAGAAAGGCTCAC-C 1286 | ||| || ||||||||||| || |||||| | ||| ||| | || |||| | || | Sbjct 1510 TCGGAGGCAGTTTGCTCATCTCGAAGAAAATCAAGGTCTAGGAG-GAAAAAG--TAACGC 1566 Query 1287 TCTTCA-ACGCCAACACGCTTCCTTGCCTAGAGAGCGAGTCCCTGC-TCCTAAGAA 1340 ||||| | | || || |||||||| || ||||||||||| ||||| ||| ||||| Sbjct 1567 ACTTCAGA-GACAGCATGCTTCCTTACCAAGAGAGCGAGTTCCTGCATCC-AAGAA 1620 > Ahg904771 jgi|Araly1|904771|Al_scaffold_0003_1899 Length=339 Score = 89.8 bits (48), Expect = 7e-17 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GCGAAAAGTTTCTCCCTTGTTAGAGATTTTGATTTGTCTGGTTTGAACTGCATTAGG 57 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 283 GCGAAAAGTTTCGGACTTGTTAGAGATTTTGATTTGTCTGGTTTGAACTGCATTAGG 339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72485736235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5