BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18050.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929671 jgi|Araly1|929671|scaffold_302128.1 1472 0.0
> Ahg929671 jgi|Araly1|929671|scaffold_302128.1
Length=1036
Score = 1472 bits (797), Expect = 0.0
Identities = 975/1056 (92%), Gaps = 31/1056 (3%)
Strand=Plus/Plus
Query 54 tgtctcc-tctGTTCCGGCGATGTTCCAACACGCGCCTTCTTCCATTTCCCTCATCATCA 112
||||||| | |||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 4 TGTCTCCAT-TGTTCCGGCGATGTTCCAACACGCGCCTTCTTCCATTT-CC-C-TCATCG 59
Query 113 TCTTCCTCTTCACCATTCTATCACCCGTTT---C--A-CCTGAACCGGTCACAGTCCAGC 166
||||| |||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct 60 TCTTCTTCTTCACCATTCTATCACCCGTTTCACCAAACCCAGAACCGGTCACAGTCCAGC 119
Query 167 CATTCCGGGTCAAATCATCCCCACCCGCAACCATACCCGCTTTCCCGGAGCAATCCGATT 226
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 CATTCCGGGTCAAATCATCCCCACCCGCCACCATACCCGCTTTCCCGGAGCAATCCGATT 179
Query 227 TCTCCGGCTGCCCACTCGATTTACCAGAAGACCTCTTCCACGGCATCAAGTCAGCTTGCA 286
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TCTCCGGCTGCCCACTCGATTTACCAGAAGACCTCTTCCACGGCATCAAATCAGCTTGCA 239
Query 287 GCGGCAAAAAGCTCCACAAAGGAAAATGTTGCCCCGTACTAGGCGCGTGGCTCTACTCTG 346
| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GTGGTAAAAAGCTCCACAAAGGAAGATGTTGCCCCGTACTAGGCGCGTGGCTCTACTCTG 299
Query 347 CTTACTCAACCACTGCTCTAAGCCGTTCGATTTCCGCCGCCGCAAGAAACTCATCCTCCT 406
||||||||||||| ||||| |||||||| |||||||||||||| |||||| |||||||||
Sbjct 300 CTTACTCAACCACAGCTCTGAGCCGTTCCATTTCCGCCGCCGCCAGAAACGCATCCTCCT 359
Query 407 CCTCCGCCGCGGTAACGACTCCTGAAGAAGATATGCCTTTGCTTCCCGATGACTCGGAGA 466
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTCCGCCGCGATAACGACGCCTGAAGAAGATATGCCTTTGCTTCCCGATGACTCGGAGA 419
Query 467 CTTGCGTTGACGGATTAGGGAAATCTCTGAGGCAGAGAGGGATTGAGCTCACTAGACCGA 526
|||| ||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 420 CTTGTGTTGACGGATTGGGGAAGTCGCTGAGACAGAGAGGGATTGAGCTCACGAGACCGA 479
Query 527 ACGAGACTTGCGACGTCGTTTACTGCTACTGTGGAATCAGATTGCATCCGTTGAGCTGTT 586
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 ACGAGACGTGCGACGTCGTTTACTGCTACTGTGGAATCAGATTGCATCCGTTGAGCTGCT 539
Query 587 CCGAGGCTTTTAGAGTGAATGATGAAGGGAGACTCGTTGGAGACGAGAGAGTTGATAGAT 646
|||||||||||| | |||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 540 CCGAGGCTTTTAAATTGAACGAAGAAGGGAGGCTCGTTGGAGACGAGAGGGTTGATAGAT 599
Query 647 TAGAGACTGATTGTTTGAGTGGAAGCCACAACAATGCTGATGGATTCTCACCTCTTCTTG 706
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 600 TAGAGACTGATTGTTTGAGTGGAAGCCACAACAATGCTGATAGATTCTCACCTCTACTTG 659
Query 707 GTTGCAACAAGTGCTTGAACAGTCTCTATAAGCTAAATCCGAAGAAAACTTCAGGGACAA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTGCAACAAGTGCTTGAACAGTCTCTATAAGCTAAATCCGAAGAAAACTTCAGGGACAA 719
Query 767 GAAACCCATCAAAGGAAGACCGAAACAGAACAGCAAAGATGCACAACAAAGACTGTGTCC 826
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAACCCATCAAAAGAAGATCGAAACAGAACAGCAAAGATGCACAACAAAGACTGTGTCC 779
Query 827 TCATGGGTCTCACTTGGCTTCTCGCTAAGAACCGTACTGCTTA-TTTCCCCACTGTCACT 885
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 780 TCATGGGTCTCACTTGGCTTCTCGCTAAGAACCGTACTGCTTACTTTCCA-ACTGTAACT 838
Query 886 TCTGTCCTCCGAGCCGTCATGCTGAACCACGATGGCGTGCCACGTTCATGTGCTCTCGGC 945
|| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 839 TCCGTCCTCCGAGCCGTCATGCTCAACCACGACGGTGTGCCACGTTCATGTGCTCTCGGC 898
Query 946 AGCGACGGCATGCCTTTAGCCGTCGATTCTTCCGAATTCTCCAACGGCTCGCCAACTTCA 1005
|||||||||||||| ||| ||||||| ||||| |||||||||| ||| ||||||||||||
Sbjct 899 AGCGACGGCATGCCCTTAACCGTCGACTCTTCGGAATTCTCCAGCGGTTCGCCAACTTCA 958
Query 1006 CTTCAGTATCCGCACCACTTGGTCCACTTCTTACTTTACAGCGTTATCACATTAGTCCTA 1065
||||||||| ||||||||| | || ||| |||||||| |||||||||||||||
Sbjct 959 CTTCAGTATTGGCACCACTT--T----TT---ACTATACAGCGTCATCACATTAGTCCTA 1009
Query 1066 ATAAGGTCGTGGTGACGTGGCACACCATGGTTGGAT 1101
| || |||||||||||||| |||||||||
Sbjct 1010 -------C-TG-TGACGTGGCACACCGTGGTTGGAT 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5