BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18070.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479295 jgi|Araly1|479295|fgenesh2_kg.3__1996__AT3G18070.1 2377 0.0
Ahg479297 jgi|Araly1|479297|fgenesh2_kg.3__1998__AT3G18080.1 1491 0.0
> Ahg479295 jgi|Araly1|479295|fgenesh2_kg.3__1996__AT3G18070.1
Length=1512
Score = 2377 bits (1287), Expect = 0.0
Identities = 1439/1513 (95%), Gaps = 8/1513 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCTTTTTCTCCTCCTCCTCTCTGCTTCCCGCTCCGGCGAAGAGTCGCCGTCCGGA 60
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTTTCTGTTTCTCCTCCTCCTCTCTGCTTCCCGCTCCGGCGACTCTTCGCCGTCCGGA 60
Query 61 GACGCCGTCCCATTGGCCACCGGCGGTCTTAACAGAAAGAGTTTTCCGGAAGGATTCTTG 120
|||||||||||||||| |||||||| ||| |||||| |||||||||| |||||||||||
Sbjct 61 GACGCCGTCCCATTGGACACCGGCGATCTAAACAGACAGAGTTTTCCAAAAGGATTCTTG 120
Query 121 TTCGGAACCGCCACGTCAGCTTACCAGGTCGAAGGCGAGACCCACCAAGATGGTCGTGGT 180
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 121 TTCGGAACCGCCACGTCAGCTTATCAGGTCGAAGGCGAGACCCACCAAGACGGTCGTGGC 180
Query 181 CCAAGCATTTGGGATGCATTCGTCAAGATTCCTGGTAAGATTGCCAACAATGCCACTGCT 240
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CCAAGCATTTGGGATGCCTTCGTCAAGATTCCTGGTAAAATTGCCAACAATGCCACTGCT 240
Query 241 GAGATAACAGTGGACCAATATCATCGTTACAAGGAAGATGTAGATTTGATGCAGAACCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGATAACAGTGGACCAATATCATCGTTACAAGGAAGATGTAGATTTGATGCAGAACCTG 300
Query 301 AACATT-GATGCCTACAGATTTTCCATTTCATGGTCTAGAATATTCCCTGAGGGATCCGG 359
||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 301 AAC-TTCGATGCCTACAGATTTTCTATTTCATGGTCTAGAATATTCCCTGAGGGAAGCGG 359
Query 360 TAAAATCAACTCGAATGGAGTTGCTTATTACAATAGATTGATCGATTACTTGATCGAAAA 419
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 360 TAAAATCAACTGGAATGGAGTTGCTTATTACAACAGATTGATCGATTACTTGATCCAAAA 419
Query 420 AGGGATTACACCGTATGCTAATCTGTACCACTATGACCTTCCTTTAGCCTTGGAACAAAA 479
|||||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |||
Sbjct 420 AGGGATTACACCGTATGCGAATCTGTACCACTATGACCTTCCTCTAGTCTTGGAACGAAA 479
Query 480 GTATCAAGGCCTGCTTAGTAAAC-A--A--GGAAGATTTTGCGGATTACGCAGAGTTTTG 534
||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 480 GTATCAAGGCCTGCTTAGTAAACAAGTAGTGGACGATTTTGCGGATTACGCAGAGTTTTG 539
Query 535 TTTCAA-ACATTTGGAGATAGAGTGAAGAACTGGATGACGTTTAACGAGCCTCGTGTAGT 593
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 540 TTTCAAGACATTTGGAGATAGAGTGAAGAATTGGATGACGTTTAACGAGCCGCGTGTAGT 599
Query 594 AGCTGCTCTAGGTTATGATAACGGCATTTTTGCGCCGGGTAGATGCTCTGAAGCATTTGG 653
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 AGCTGCTCTAGGTTATGATAACGGCATTTTTGCGCCGGGTAGATGCTCTAAAGCATTTGG 659
Query 654 AAACTGCACTGATGGAAACTCTGCAACTGAACCATACATTGTTGCACATCACCTTATCTT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAACTGCACTGATGGAAACTCTGCAACTGAACCATACATTGTTGCACATCACCTTATCTT 719
Query 714 GGCACATGCAGCAGCCGTCCAGAGATACCGCCAAAATTATCAGGAGAAACAAAAGGGAAG 773
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGCACATGCAGCAGCTGTCCAGAGATACCGCCAAAATTATCAGGAGAAACAAAAGGGAAG 779
Query 774 GGTTGGGATTCTACTGGATTTTGTTTGGTTTGAGCCACTTACGAGTAGTCAAGCAGACAA 833
| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 780 GATTGGGATTCTACTGGATTTTGTTTGGTTCGAGCCACTTACGAGTAGTAAAGCAGATAA 839
Query 834 TGACGCTGCTCAAAGAGCAAGAGACTTCCATGTTGGATGGTTTATTCACCCAATAGTGTA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGACGCTGCTCAAAGAGCAAGAGACTTCCATGTTGGATGGTTTATTCACCCAATAGTGTA 899
Query 894 TGGAGAGTACCCAAATACGTTGCAAAACATCGTGAAGGAGAGACTTCCGAAGTTCACCGA 953
||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 TGGAGAGTACCCATATACAATGCAAAACATCGTGAAGGAGAGACTTCCGAAATTCACCGA 959
Query 954 GGAAGAAGTGAAAATGGTGAAAGGTTCCATAGACTTCGTGGGGATAAACCAATACACAAC 1013
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 960 GGAAGAAGTGAAAATGGTGAAAGGTTCCATAGACTTCGTGGGCATAAACCAATACACGAC 1019
Query 1014 TTATTTCATGTCTGATCCTAAAATATCTACCACACCTAAAGATTTGGGTTATCAACAAGA 1073
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1020 TTATTTCATGTCAGATCCTAAAATATCCACCATACCTAAAGATTTGGGTTATCAACAAGA 1079
Query 1074 TTGGAACGTCACTTTTAACTTTGCAAAGAATGGGACACCAATTGGTCCAAGGGCACATTC 1133
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 TTGGAACGTCACTTTTAACTTTGCAAAGAATGGGACACCAATAGGTCCAAGGGCACATTC 1139
Query 1134 AGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACG 1193
|||||||||||||| || ||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1140 TGAATGGTTATACAACGTACCATGGGGAATGTACAAGGCTTTGATGTACATTAAGGAACG 1199
Query 1194 TTATGGCAACCCAACTATGATTCTCTCCGAAAACGGTATGGATGATCCGGGCAACATAAC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTATGGCAACCCAACTATGATTCTCTCCGAAAACGGTATGGATGATCCGGGCAACATAAC 1259
Query 1254 TCTAACTCAAGGACTAAATGATACAACAAGAGTCAAGTATTATAGAGACTATTTAGTGCA 1313
|||| ||||||||| |||||||||||| ||| ||||||||||||||||||| |||| ||
Sbjct 1260 TCTAGCTCAAGGACAAAATGATACAACTAGAATCAAGTATTATAGAGACTACTTAGCACA 1319
Query 1314 GCTTAAAAAAGCAGTAGACGATGGAGCCAATCTAACTGGATATTTTGCGTGGTCGTTGCT 1373
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1320 GCTTAAAAAAGCAGTAGACGATGGAGCCAATCTAACTGGATATTTCGCGTGGTCTTTGCT 1379
Query 1374 AGATAATTTCGAATGGTTATCAGGATATACTTCAAGGTTTGGAATAGTGTACGTTGATTA 1433
|||||||| |||||||||||||||||||||||||||||||| || || || ||||||||
Sbjct 1380 TGATAATTTTGAATGGTTATCAGGATATACTTCAAGGTTTGGGATCGTTTATGTTGATTA 1439
Query 1434 CAAGGACTTGAAGAGATACCCCAAGATGTCTGCTTTATGGTTTAAACAACTTTTGAAACG 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CAAGGACTTGAAGAGATACCCCAAGATGTCTGCTTTATGGTTTAAACAACTTTTGAAACG 1499
Query 1494 GGACCAGAAATGA 1506
|||||||||||||
Sbjct 1500 GGACCAGAAATGA 1512
> Ahg479297 jgi|Araly1|479297|fgenesh2_kg.3__1998__AT3G18080.1
Length=1637
Score = 1491 bits (807), Expect = 0.0
Identities = 1285/1514 (85%), Gaps = 40/1514 (3%)
Strand=Plus/Plus
Query 16 CTCCTCCTCTCTGC-TTCCCGCTCCGGCGAAGAGTCGCCGTCCGGAGACGCCGTCCCATT 74
|||||||||||| | ||| | |||||||||| || ||||||| ||| ||| | |
Sbjct 46 CTCCTCCTCTCTTCTTTCAC-CTCCGGCGAATCCTCTCCGTCCGCAGAAAAAGTCAAACT 104
Query 75 GGCCACCGGCGGTCTTAACAGAAAGAGTTTTCCGGAAGGATTCTTGTTCGGAACCGCCAC 134
| |||||| ||||| | ||| |||||||||| ||||||||||||| |||||||||||
Sbjct 105 CGACACCGGTGGTCTCAGTAGACAGAGTTTTCCTAAAGGATTCTTGTTTGGAACCGCCAC 164
Query 135 GTCAGCTTACCAGGTCGAAGGCGAGACCCACCAAGATGGTCGTGGTCCAAGCATTTGGGA 194
||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 165 GTCAGCTTATCAGGTCGAAGGCGAGACTCATCAAGACGGTCGTGGCCCAAGCATTTGGGA 224
Query 195 TGCATTCGTCAAGATTCCTGGTAAGATTGCCAACAATGCCACTGCTGAGATAACAGTGGA 254
||| || |||||||||||||| | || ||||| ||||| || |||||||||||||||||
Sbjct 225 TGCCTTTGTCAAGATTCCTGGGACTATCGCCAAGAATGCGACGGCTGAGATAACAGTGGA 284
Query 255 CCAATATCATCGTTACAAGGAAGATGTAGATTTGATGCAGAACCTGAACATTGATGCCTA 314
||| ||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||| ||
Sbjct 285 CCAGTATCACCGTTACAAGGAAGATGTGGATTTGATGAAGAAACTGAACTTTGATGCTTA 344
Query 315 CAGATTTTCCATTTCATGGTCTAGAATATTCCCTGA-GGGATCCGGTAAAATCAACTCGA 373
||||||||||||||||||||| |||||||||||||| |||| |||||| |||||| ||
Sbjct 345 CAGATTTTCCATTTCATGGTCCAGAATATTCCCTGAGGGGA-GTGGTAAAGTCAACTGGA 403
Query 374 ATGGAGTTGCTTATTACAATAGATTGATCGATTACTTGATCGAAAAAGGGATTACACCGT 433
| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |
Sbjct 404 AAGGAGTTGCTTATTACAATAGATTGATTGATTACTTGGTCCAAAAAGGGATTACACCTT 463
Query 434 ATGCTAATCTGTACCACTATGACCTTCCTTTAGCCT-TGGAACAA-AAGTATCAAGGCCT 491
|||| ||||| |||||||| || ||||| || | || ||||| || |||||| ||||| |
Sbjct 464 ATGCAAATCTATACCACTACGATCTTCCATT-GGCTCTGGAA-AAGAAGTATAAAGGCTT 521
Query 492 GCTTAGTAAAC-A--AG-GAA-GATTTTGCGGATTACGCAGAGTTTTGTTTCAA-ACATT 545
|||| ||| || | || ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 522 GCTTGGTAGACAAGTAGTGAACGATTTTGCGGATTACGCAGAGTTTTGTTTCAAGACATT 581
Query 546 TGGAGATAGAGTGAAGAACTGGATGACGTTTAACGAGCCTCGTGTAGTAGCTGCTCTAGG 605
||||||||||||||| || ||||||||||| |||||||| ||||| ||||||||| ||||
Sbjct 582 TGGAGATAGAGTGAAAAATTGGATGACGTTCAACGAGCCGCGTGTGGTAGCTGCTTTAGG 641
Query 606 TTATGATAACGGCATTTTTGCGCCGGGTAGATGCTCTGAAGCATTTGGAAACTGCACTGA 665
|||||||||||| ||||| || ||||||||||||||| ||||||||||||| ||||||||
Sbjct 642 TTATGATAACGGTATTTTCGCACCGGGTAGATGCTCTAAAGCATTTGGAAATTGCACTGA 701
Query 666 TGGAAACTCTGCAACTGAACCATACATTGTTGCACATCACCTTATCTTGGCACATGCAGC 725
||||||||||| || || |||||||| ||| | ||||||||||||||||| || |||||
Sbjct 702 AGGAAACTCTGCGACCGAGCCATACATAGTTTCTCATCACCTTATCTTGGCCCACGCAGC 761
Query 726 AGCCGTCCAGAGATACCGCCAAA-ATTATCAGGAGAAACAAAAGGGAAGGGTTGGGATTC 784
||| ||||| ||||||||| ||| |||| || | ||||||||||||||| ||||||| |
Sbjct 762 AGCAGTCCAAAGATACCGC-AAATATTACCAAGCGAAACAAAAGGGAAGAATTGGGATAC 820
Query 785 TACTGGATTTTGTTTGGTTTGAGCCACTTACGAGTAGTCAAGCAGACAATGACGCTGCTC 844
| | ||||| ||||||| |||||||||||| || ||| ||||||| ||| || ||||
Sbjct 821 TTTTAGATTTCGTTTGGTATGAGCCACTTACTAGAAGTAAAGCAGATAATCTTGCAGCTC 880
Query 845 AAAGAGCAAGAGACTTCCATGTTGGATGGTTTATTCACCCAATAGTGTATGGAGAGTACC 904
|||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |
Sbjct 881 AAAGAGCAAGAGACTTCCATATAGGATGGTTTATTCACCCAATAGTATATGGAGAGTATC 940
Query 905 CAAATACGTTGCAAAACATCGTGAAGGAGAGACTTCCGAAGTTCACCGA-GGAAGAAGTG 963
|||| || |||| ||||| ||||| ||||| ||||| || ||||| || ||||||||||
Sbjct 941 CAAAGACAATGCAGAACATTGTGAAAGAGAGGCTTCCAAAATTCAC-GAAGGAAGAAGTG 999
Query 964 AAAATGGTGAAAGGTTCCATAGACTTCGTGGGGATAAACCAATACACAACTTATTTCATG 1023
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct 1000 AAAATGGTGAAAGGTTCCATAGATTTCGTGGGAATAAACCAATACACAACTTATTACATG 1059
Query 1024 TCTGATCCTAAAATATCTACCAC-A--CCTAAAGATTTGGGTTATCAACAAGATTGGAAC 1080
|| || || | | | | ||||| | ||||| | ||||||||||||||||||||||||
Sbjct 1060 TCCGAACC-ACA-TCCC-ACCACCAAACCTAAGGCTTTGGGTTATCAACAAGATTGGAAT 1116
Query 1081 GTC-ACTTTTAACTTTGCAAAGAATGGG-ACA-CCAATTGGTCCAAGGGCACATTCAGAA 1137
|| | |||| |||||| ||| |||| | | ||||||||||||||||| | || | |
Sbjct 1117 GTGGA-TTTTGGCTTTGCTAAGT-TGGGGA-AGCCAATTGGTCCAAGGGCTTACTC-GTA 1172
Query 1138 T-GGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGA-GGAACGTT 1195
| |||||||||| || ||||||||||||||||| || || ||||| || || ||||||||
Sbjct 1173 TTGGTTATACAACGTACCATGGGGAATGTACAAGGCCTTGATGTATAT-GAAGGAACGTT 1231
Query 1196 ATGGCAACCCAACTATGATTCTCTCCGAAAACGGTATGGATGATCCGGGCAACATAACTC 1255
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||
Sbjct 1232 ACGGCAACCCAACTATGATTCTCTCTGAAAACGGTATGGATGACCCGGGAAACGTCACTC 1291
Query 1256 TAACTCAAGGACTAAATGATACAACAAGAGTCAAGTATTATAGAGACTATTTAGTGCAGC 1315
|| ||||||||||| | || || || ||| |||||||||| | ||| || ||| || |
Sbjct 1292 TAGCTCAAGGACTACACGACACGACGAGAATCAAGTATTACAAAGATTACTTAAC-CAAC 1350
Query 1316 -TTAAAAAAGC-AGTAGACGATGGAGCCAATCTAACTGGATATTTTGCGTGGTCGTTGCT 1373
|||| ||||| || || |||||||||||| | |||||||||||||||||| |||||
Sbjct 1351 CTTAAGAAAGCTAGG-GATGATGGAGCCAATGTGGTTGGATATTTTGCGTGGTCTTTGCT 1409
Query 1374 AGATAATTTCGAATGGTTATCAGGATATACTTCAAGGTTTGGAATAGTGTACGTTGATTA 1433
|||||||| |||||||||||||||||||||||||||||||| || || || ||||||||
Sbjct 1410 TGATAATTTTGAATGGTTATCAGGATATACTTCAAGGTTTGGGATCGTTTATGTTGATTA 1469
Query 1434 CAAGGAC-TTGAAGAGATACCCCAAGATGTCTGCTTTATGGTTTAAACAACTTTTGAAAC 1492
||| || |||||||| |||||||||||||||||| ||||||||| |||||| ||||||
Sbjct 1470 CAAA-ACATTGAAGAGGTACCCCAAGATGTCTGCTCAATGGTTTAAGCAACTTCTGAAAC 1528
Query 1493 GGGACCAGAAATGA 1506
| || | ||||||
Sbjct 1529 GAAACAACAAATGA 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5