BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18080.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479297 jgi|Araly1|479297|fgenesh2_kg.3__1998__AT3G18080.1 2534 0.0
Ahg479295 jgi|Araly1|479295|fgenesh2_kg.3__1996__AT3G18070.1 1594 0.0
> Ahg479297 jgi|Araly1|479297|fgenesh2_kg.3__1998__AT3G18080.1
Length=1637
Score = 2534 bits (1372), Expect = 0.0
Identities = 1495/1555 (96%), Gaps = 5/1555 (0%)
Strand=Plus/Plus
Query 30 ATGAGACACCTTAGctcacctccatggcctctcctccttct-c--ctcctcctctcttct 86
|||||| || | | ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 ATGAGATACATCATCTCACCTCCATGGCCTCTCCTCCTTCTCCTTCTCCTCCTCTCTTCT 60
Query 87 ttcacctccggcgaatcctctctGTCCGCAGaaaaaaaCAAA-TTGCACACCGGTGGTCT 145
|||||||||||||||||||||| ||||||||||||| |||| | | |||||||||||||
Sbjct 61 TTCACCTCCGGCGAATCCTCTCCGTCCGCAGAAAAAGTCAAACTCG-ACACCGGTGGTCT 119
Query 146 CAGTAGACAGAGTTTTCCTAAAGGATTCGTGTTTGGAACCGCCACGTCAGCTTATCAAGT 205
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 120 CAGTAGACAGAGTTTTCCTAAAGGATTCTTGTTTGGAACCGCCACGTCAGCTTATCAGGT 179
Query 206 CGAAGGCGAGACTCATCAAGACGGTCGTGGCCCAAGCATTTGGGATGCCTTCGTCAAGAT 265
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 CGAAGGCGAGACTCATCAAGACGGTCGTGGCCCAAGCATTTGGGATGCCTTTGTCAAGAT 239
Query 266 TCCTGGGAAGATCGCCAAGAATGCCACGGCTGAGATAACAGTGGACCAGTATCACCGTTA 325
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTGGGACTATCGCCAAGAATGCGACGGCTGAGATAACAGTGGACCAGTATCACCGTTA 299
Query 326 CAAGGAAGATGTGGATTTGATGAAGAAACTGAACTTCGATGCTTACAGATTTTCCATTTC 385
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CAAGGAAGATGTGGATTTGATGAAGAAACTGAACTTTGATGCTTACAGATTTTCCATTTC 359
Query 386 ATGGTCCAGGATATTCCCTGAGGGAAGTGGTAAAGTCAACTGGAAAGGAGTTGCTTATTA 445
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 ATGGTCCAGAATATTCCCTGAGGGGAGTGGTAAAGTCAACTGGAAAGGAGTTGCTTATTA 419
Query 446 CAATAGATTGATTGATTACATGGTTCAAAAAGGGATTACACCTTATGCTAATCTGTACCA 505
||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||
Sbjct 420 CAATAGATTGATTGATTACTTGGTCCAAAAAGGGATTACACCTTATGCAAATCTATACCA 479
Query 506 CTACGATCTTCCATTGGCTTTGGAAAACAAGTATAAAGGCTTGCTTGGTAGACAAGTAGT 565
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 CTACGATCTTCCATTGGCTCTGGAAAAGAAGTATAAAGGCTTGCTTGGTAGACAAGTAGT 539
Query 566 GAAAGATTTTGCGGATTACGCTGAGTTTTGTTACAAGACATTTGGTGATAGAGTGAAAAA 625
||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 540 GAACGATTTTGCGGATTACGCAGAGTTTTGTTTCAAGACATTTGGAGATAGAGTGAAAAA 599
Query 626 TTGGATGACGTTCAACGAGCCGCGTGTGGTAGCTGCTTTAGGTTATGATAATGGTATTTT 685
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TTGGATGACGTTCAACGAGCCGCGTGTGGTAGCTGCTTTAGGTTATGATAACGGTATTTT 659
Query 686 CGCACCGGGTAGATGCTCAAAAGCATTTGGAAATTGCACTGAAGGAAACTCCGCGACAGA 745
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 660 CGCACCGGGTAGATGCTCTAAAGCATTTGGAAATTGCACTGAAGGAAACTCTGCGACCGA 719
Query 746 GCCATACATAGTTACTCATCACCTTATCTTGGCCCACGCAGCAGCAGTCCAAAGATACCG 805
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCCATACATAGTTTCTCATCACCTTATCTTGGCCCACGCAGCAGCAGTCCAAAGATACCG 779
Query 806 CAAATATTACCAAGCGAAACAAAAGGGAAGGGTTGGGATACTTTTAGATTTCGTTTGGTA 865
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 CAAATATTACCAAGCGAAACAAAAGGGAAGAATTGGGATACTTTTAGATTTCGTTTGGTA 839
Query 866 TGAGCCGCTTACTAGAAGTAAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCA 925
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGCCACTTACTAGAAGTAAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCA 899
Query 926 TATCGGATGGTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACAT 985
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 TATAGGATGGTTTATTCACCCAATAGTATATGGAGAGTATCCAAAGACAATGCAGAACAT 959
Query 986 TGTGAAAGAGAGGCTTCCAAAGTTCACGGAGAAAGAAGTGAAAATGGTGAAAGGTTCCAT 1045
||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 960 TGTGAAAGAGAGGCTTCCAAAATTCACGAAGGAAGAAGTGAAAATGGTGAAAGGTTCCAT 1019
Query 1046 AGATTTTGTGGGAATAAACCAATACACGACTTATTACATGTCCGAACCACATCCCACCAC 1105
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 AGATTTCGTGGGAATAAACCAATACACAACTTATTACATGTCCGAACCACATCCCACCAC 1079
Query 1106 CAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCTTTGCTAAGTT 1165
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 CAAACCTAAGGCTTTGGGTTATCAACAAGATTGGAATGTGGATTTTGGCTTTGCTAAGTT 1139
Query 1166 GGGGAAGCCAATAGGTCCAAGGGCTTACTCGTCTTGGTTATACAACGTACCATGGGGAAT 1225
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1140 GGGGAAGCCAATTGGTCCAAGGGCTTACTCGTATTGGTTATACAACGTACCATGGGGAAT 1199
Query 1226 GTACAAGGCCTTGATGTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGA 1285
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1200 GTACAAGGCCTTGATGTATATGAAGGAACGTTACGGCAACCCAACTATGATTCTCTCTGA 1259
Query 1286 AAACGGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACATGACACCACGAG 1345
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1260 AAACGGTATGGATGACCCGGGAAACGTCACTCTAGCTCAAGGACTACACGACACGACGAG 1319
Query 1346 AATCAAGTATTACAAAGATTACTTAACCAACCTTAAGAAAGCTAGGGATGATGGAGCCAA 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AATCAAGTATTACAAAGATTACTTAACCAACCTTAAGAAAGCTAGGGATGATGGAGCCAA 1379
Query 1406 TGTGGTTGGATATTTTGCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATAC 1465
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1380 TGTGGTTGGATATTTTGCGTGGTCTTTGCTTGATAATTTTGAATGGTTATCAGGATATAC 1439
Query 1466 TTCAAGGTTTGGGATCGTTTATGTTGATTACAAAACATTGAAGAGGTACCCCAAGATGTC 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTCAAGGTTTGGGATCGTTTATGTTGATTACAAAACATTGAAGAGGTACCCCAAGATGTC 1499
Query 1526 TGCTCAGTGGTTTAAGCAACTTCTGAAACGAAACAACAAATGATCTCAATGTATC 1580
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGCTCAATGGTTTAAGCAACTTCTGAAACGAAACAACAAATGATCTCAATGTATC 1554
> Ahg479295 jgi|Araly1|479295|fgenesh2_kg.3__1996__AT3G18070.1
Length=1512
Score = 1594 bits (863), Expect = 0.0
Identities = 1305/1518 (86%), Gaps = 32/1518 (2%)
Strand=Plus/Plus
Query 67 ttctcctcctcctctcttctttcac-ctccggcgaatcctctctGTCCGCAGaaaaaaaC 125
||||||||||||||||| | ||| | ||||||||| || || | ||||| ||| |
Sbjct 11 TTCTCCTCCTCCTCTCTGC-TTCCCGCTCCGGCGACTCTTCGCCGTCCGGAGACGCCGTC 69
Query 126 AAATTGCACACCGGTGGTCTCAGTAGACAGAGTTTTCCTAAAGGATTCGTGTTTGGAACC 185
|||| ||||||| | ||| | |||||||||||||| ||||||||| |||| ||||||
Sbjct 70 CCATTGGACACCGGCGATCTAAACAGACAGAGTTTTCCAAAAGGATTCTTGTTCGGAACC 129
Query 186 GCCACGTCAGCTTATCAAGTCGAAGGCGAGACTCATCAAGACGGTCGTGGCCCAAGCATT 245
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 130 GCCACGTCAGCTTATCAGGTCGAAGGCGAGACCCACCAAGACGGTCGTGGCCCAAGCATT 189
Query 246 TGGGATGCCTTCGTCAAGATTCCTGGGAAGATCGCCAAGAATGCCACGGCTGAGATAACA 305
|||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||
Sbjct 190 TGGGATGCCTTCGTCAAGATTCCTGGTAAAATTGCCAACAATGCCACTGCTGAGATAACA 249
Query 306 GTGGACCAGTATCACCGTTACAAGGAAGATGTGGATTTGATGAAGAAACTGAACTTCGAT 365
|||||||| ||||| ||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct 250 GTGGACCAATATCATCGTTACAAGGAAGATGTAGATTTGATGCAGAACCTGAACTTCGAT 309
Query 366 GCTTACAGATTTTCCATTTCATGGTCCAGGATATTCCCTGAGGGAAGTGGTAAAGTCAAC 425
|| ||||||||||| ||||||||||| || ||||||||||||||||| |||||| |||||
Sbjct 310 GCCTACAGATTTTCTATTTCATGGTCTAGAATATTCCCTGAGGGAAGCGGTAAAATCAAC 369
Query 426 TGGAAAGGAGTTGCTTATTACAATAGATTGATTGATTACATGGTTCAAAAAGGGATTACA 485
||||| ||||||||||||||||| |||||||| |||||| || | |||||||||||||||
Sbjct 370 TGGAATGGAGTTGCTTATTACAACAGATTGATCGATTACTTGATCCAAAAAGGGATTACA 429
Query 486 CCTTATGCTAATCTGTACCACTACGATCTTCCAT-T-GGCTTTGGAA-AACAAGTATAAA 542
|| ||||| |||||||||||||| || ||||| | | | | |||||| | |||||| ||
Sbjct 430 CCGTATGCGAATCTGTACCACTATGACCTTCC-TCTAGTC-TTGGAACGA-AAGTATCAA 486
Query 543 GGCTTGCTTGGTAGACAAGTAGTGAAAGATTTTGCGGATTACGCTGAGTTTTGTTACAAG 602
||| ||||| ||| |||||||||| | ||||||||||||||||| |||||||||| ||||
Sbjct 487 GGCCTGCTTAGTAAACAAGTAGTGGACGATTTTGCGGATTACGCAGAGTTTTGTTTCAAG 546
Query 603 ACATTTGGTGATAGAGTGAAAAATTGGATGACGTTCAACGAGCCGCGTGTGGTAGCTGCT 662
|||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 547 ACATTTGGAGATAGAGTGAAGAATTGGATGACGTTTAACGAGCCGCGTGTAGTAGCTGCT 606
Query 663 TTAGGTTATGATAATGGTATTTTCGCACCGGGTAGATGCTCAAAAGCATTTGGAAATTGC 722
||||||||||||| || ||||| || |||||||||||||| |||||||||||||| |||
Sbjct 607 CTAGGTTATGATAACGGCATTTTTGCGCCGGGTAGATGCTCTAAAGCATTTGGAAACTGC 666
Query 723 ACTGAAGGAAACTCCGCGACAGAGCCATACATAGTTACTCATCACCTTATCTTGGCCCAC 782
||||| |||||||| || || || |||||||| ||| | ||||||||||||||||| ||
Sbjct 667 ACTGATGGAAACTCTGCAACTGAACCATACATTGTTGCACATCACCTTATCTTGGCACAT 726
Query 783 GCAGCAGCAGTCCAAAGATACCG-CAAATATTACCAAGCGAAACAAAAGGGAAGGGTTGG 841
|||||||| ||||| |||||||| |||| |||| || | |||||||||||||||| ||||
Sbjct 727 GCAGCAGCTGTCCAGAGATACCGCCAAA-ATTATCAGGAGAAACAAAAGGGAAGGATTGG 785
Query 842 GATACTTTTAGATTTCGTTTGGTAT-GAGCCGCTTACTAGAAGTAAAGCAGATAATCTTG 900
||| || | ||||| ||||||| | ||||| ||||| || ||||||||||||||| |
Sbjct 786 GATTCTACTGGATTTTGTTTGGT-TCGAGCCACTTACGAGTAGTAAAGCAGATAATGACG 844
Query 901 CAGCTCAAAGAGCAAGAGACTTCCATATCGGATGGTTTATTCACCCATTAGTATATGGAG 960
| |||||||||||||||||||||||| | |||||||||||||||||| |||| |||||||
Sbjct 845 CTGCTCAAAGAGCAAGAGACTTCCATGTTGGATGGTTTATTCACCCAATAGTGTATGGAG 904
Query 961 AGTATCCAAAGACAATGCAGAACATTGTGAAAGAGAGGCTTCC-AAAGTTCACGGAGAAA 1019
|||| ||| | |||||||| ||||| ||||| ||||| ||||| ||| ||||| ||| ||
Sbjct 905 AGTACCCATATACAATGCAAAACATCGTGAAGGAGAGACTTCCGAAA-TTCACCGAGGAA 963
Query 1020 GAAGTGAAAATGGTGAAAGGTTCCATAGATTTTGTGGGAATAAACCAATACACGACTTAT 1079
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 964 GAAGTGAAAATGGTGAAAGGTTCCATAGACTTCGTGGGCATAAACCAATACACGACTTAT 1023
Query 1080 TACATGTCCGAACCACATCCCA-CCACCAAACCTAAGGATTTGGGTTATCAACAAGATTG 1138
| |||||| || || | | |||||| |||||| |||||||||||||||||||||||
Sbjct 1024 TTCATGTCAGATCC-TAAAATATCCACCATACCTAAAGATTTGGGTTATCAACAAGATTG 1082
Query 1139 GAATGTGGA-ATTTGGCTTTGCTAAG-TTGGGGA-AGCCAATAGGTCCAAGGGCTTACTC 1195
||| || | ||| |||||| ||| | |||| | ||||||||||||||||| | ||
Sbjct 1083 GAACGT-CACTTTTAACTTTGCAAAGAAT-GGGACA-CCAATAGGTCCAAGGGCACATTC 1139
Query 1196 GT-CTTGGTTATACAACGTACCATGGGGAATGTACAAGGCCTTGATGTATATGAAGGAAC 1254
| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1140 -TGAATGGTTATACAACGTACCATGGGGAATGTACAAGGCTTTGATGTACATTAAGGAAC 1198
Query 1255 GTTACGGCAACCCTACTATGATCCTCTCTGAAAACGGTATGGATGACCCGGGAAACGTTA 1314
|||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| ||| | |
Sbjct 1199 GTTATGGCAACCCAACTATGATTCTCTCCGAAAACGGTATGGATGATCCGGGCAACATAA 1258
Query 1315 CTCTAGCTCAAGGACTACATGACACCACGAGAATCAAGTATTACAAAGATTACTTAACCA 1374
||||||||||||||| | |||| || || |||||||||||||| | ||| ||||| | ||
Sbjct 1259 CTCTAGCTCAAGGACAAAATGATACAACTAGAATCAAGTATTATAGAGACTACTT-AGCA 1317
Query 1375 -ACCTTAAGAAAGCTAG-GGATGATGGAGCCAATGTGGTTGGATATTTTGCGTGGTCATT 1432
| ||||| ||||| || || |||||||||||| | ||||||||| |||||||| ||
Sbjct 1318 CAGCTTAAAAAAGC-AGTAGACGATGGAGCCAATCTAACTGGATATTTCGCGTGGTCTTT 1376
Query 1433 GCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAGGTTTGGGATCGTTTATGTTGA 1492
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GCTTGATAATTTTGAATGGTTATCAGGATATACTTCAAGGTTTGGGATCGTTTATGTTGA 1436
Query 1493 TTACAAA-ACATTGAAGAGGTACCCCAAGATGTCTGCTC-AGTGGTTTAAGCAACTTCTG 1550
|||||| || |||||||| |||||||||||||||||| | |||||||| |||||| ||
Sbjct 1437 TTACAAGGAC-TTGAAGAGATACCCCAAGATGTCTGCTTTA-TGGTTTAAACAACTTTTG 1494
Query 1551 AAACGAAACAACAAATGA 1568
||||| || | ||||||
Sbjct 1495 AAACGGGACCAGAAATGA 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5