BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18100.1
Length=2655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479301 jgi|Araly1|479301|fgenesh2_kg.3__2002__AT3G18100.1 2217 0.0
Ahg947372 jgi|Araly1|947372|scaffold_703601.1 1522 0.0
Ahg354789 jgi|Araly1|354789|fgenesh1_pg.C_scaffold_7001962 1343 0.0
> Ahg479301 jgi|Araly1|479301|fgenesh2_kg.3__2002__AT3G18100.1
Length=2516
Score = 2217 bits (1200), Expect = 0.0
Identities = 1347/1418 (95%), Gaps = 9/1418 (1%)
Strand=Plus/Plus
Query 1026 AAT-TGGGCCTTGTGATAGCTTCGAGGGTAATGATAAAAAGATATCTCCTTTGACGTTGG 1084
||| || |||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1009 AATCTGAGCCTTGTGATAGCTCCGAGGGTAATGATAAAAAGACATCTCCTTTGATGTTGG 1068
Query 1085 GTCCAGCGGAAAACCCTTGTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAATTT 1144
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1069 GTCCAGCGGAAAACCCTTGTGTTGCAAATTATAGGATGGCACTAGAGAAATATCCAATTT 1128
Query 1145 CAGTGAAACGCAGAAAATGGTCTACTGAGGAGAACAAAAACCTCGCAAAAGGTTTAAAAC 1204
||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1129 CAGTGGAACGCAGAAAATGGTCTACTGAGGAGAACAAAAAACTTGCAAAAGGTTTAAAAC 1188
Query 1205 AAGAAGTTCAAAAGATACTGCTTTCTGAAGCAATTGAACGGTCCAGTGACTTGGAAGGAG 1264
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1189 AAGAAGTTCAAAAAATACTGCTTTCTGAAGCTATTGAACAGTCCAGTGACTTGGAAGGAT 1248
Query 1265 CTACATATGATATAGACACTATCAATGAATCGATCGGAAATCTTGAGATCACACCAGAAA 1324
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1249 CTACATATGATATAGACACCATCAATGAAGCGATCGGAAATCTTGAGATCACACCAGAAA 1308
Query 1325 TGATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTCGTTGGATATCAAGGACCGTTCTG 1384
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1309 TGATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTTGTTGGATATCAAGGACCGTTCTG 1368
Query 1385 CTGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGT 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 CTGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGT 1428
Query 1445 GGACTGCAGCAGAGGACAAAAACCTACTCCGAACTATCGAACAAACGAGTCTTACAGACT 1504
||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||
Sbjct 1429 GGACTGCAGCAGAGGACAAAAACCTTCTCCGAATTATCGAAAAAAAGAGTCTTACAGACT 1488
Query 1505 GGGTTGATATCGCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGAT 1564
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1489 GGGTTGATATTGCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGACTCGAT 1548
Query 1565 ATCAGAGAAGCTTGAATCCAAGCATATTGAAAAAAGAATGGACTGCAGAGGAAGATGACC 1624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1549 ATCAGAGAAGCTTGAATCCAAGCATATTGAAAAAAGAATGGACTGCAGAGGAAGATGATC 1608
Query 1625 AACTTCGTACTGCAGTAGAGTTATTTGGGGAGAAAGACTGGCAATCTGTTGCAAATGTAT 1684
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1609 AACTTCGTGCTGCAGTAGAGTTATTTGGCGATAAAGACTGGCAATCTGTTGCAAATGTAT 1668
Query 1685 TAAAAGGAAGAACTGGAACTCAGTGCTCGAATAGATGGAAAAAGTCGCTTCGCCCTACCA 1744
||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1669 TAAAAGGAAGAACTGGACCTCAGTGCTCAAATAGATGGAAAAAGTCGCTTCGCCCGACCA 1728
Query 1745 GAAAAGGGACATGGAGCTTAGAGGAAGACAAACGTGT-AAAGGTAGCTGTGACACTCTTT 1803
||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||
Sbjct 1729 GAAAAGGGACATGGAGCTTAGAGGAAGACAAGCGTGTGAAAG-TAGCTGTAACACTCTTT 1787
Query 1804 GGATCTCAAAACTGGCATAAAATTTCTCAGTTTGTTCCTGGACGGACTCAGACTCAGTGT 1863
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1788 GGATCTCAAAACTGGCATAAGATTTCTCAGTTTGTTCCTGGACGGACCCAGACTCAGTGT 1847
Query 1864 CGGGAGAGATGGTTAAATTGTTTAGATCCCAAAGTAAATCGTGGGAAGTGGACTGAGGAA 1923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 CGGGAGAGATGGTTAAATTGTTTAGATCCCAAAGTAAATCGTGGGAAGTGGACTGAGGAA 1907
Query 1924 GAGGATGAAAAGTTGAGAGAAGCAATTGCAGAGCATGGATATAGCTGGTCTAAGGTGGCT 1983
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1908 GAGGATGGAAAGTTGAGAGAAGCAATTGCAGAACATGGATATAGCTGGTCTAAGGTTGCT 1967
Query 1984 ACTAATCTGTCATGTCGTACTGACAATCAGTGCTTGAGGAGATGGAAGAGATTATATCCT 2043
|||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1968 TCTAAACTATCTTGTCGTACTGACAGTCAGTGCTTGAGGAGATGGAAGAGATTATATCCT 2027
Query 2044 CATCAAGTGGCTCTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGCTAGTGTAGGTAAT 2103
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2028 CATCAAGTGGCTCTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGGTAGTGTAGGTAAT 2087
Query 2104 TTTGTTGATCGGGAATCAGAGCGTCCTGCTCTTGTCACAAGCCCTATTTTGGCACTACCG 2163
|||||||| |||||||||||||||||| ||||||||||| || ||||||||||||| |||
Sbjct 2088 TTTGTTGACCGGGAATCAGAGCGTCCTTCTCTTGTCACAGGCGCTATTTTGGCACTGCCG 2147
Query 2164 GATATATCTCTAGAGCCAGAACCCGATAGTGTAGCCCTGAAGAAGAAACGCAAAGCCAA- 2222
|| |||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 2148 GAGATATCTCTAGAGCCAGAACCCGATAGTGTAACTGTGAAGAAGAAACGCAAGGCCAAA 2207
Query 2223 GCAGAAGAAGTCAGATGCAGAGAGACAACCAAAGAGACGGAGAAAAGGATTAAAGAACTG 2282
| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 2208 G-AGAAGAAGTCAGATGCAGAGAGACAACCAAAGAGACGAAGAAAAGCATTAAAGAAATG 2266
Query 2283 CTCAGGAGATGTATGTAGACAAGAGAATGAGACTGTTTGTGAAAATGAACCGAACAATGG 2342
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2267 CTCAGGAGATGTATGTAGACAAGAGAATGAGACTGTTTGTGAAAATGAACCAAACAATGG 2326
Query 2343 AGGAGAGGAAAGGATGTTGGCATTGGAATGTCATGACGAGATCCAAGACAATGCAAAGGA 2402
||||||||| ||| |||||| ||||||||||||| ||||||||| || ||||||||||||
Sbjct 2327 AGGAGAGGAGAGGTTGTTGGAATTGGAATGTCATAACGAGATCCTAGGCAATGCAAAGGA 2386
Query 2403 GAAGCCAAA-AC-AAAGACGCAAAAGTGTTGCAGAAAC 2438
||| | ||| || ||| |||||||||||||||||||||
Sbjct 2387 GAAAC-AAAGACGAAA-ACGCAAAAGTGTTGCAGAAAC 2422
Score = 1024 bits (554), Expect = 0.0
Identities = 680/737 (92%), Gaps = 23/737 (3%)
Strand=Plus/Plus
Query 5 TCTTCTTCTTCTAGAGGCATAAACCCTTGGCTTGGAGCCGTTTCTCTCATTCTTCGATTT 64
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1 TCTTCTTCTTCTAGAGGCATAAACCCTTCGCTTGGAGCCGTTTCTCGCATTCTTCGA--T 58
Query 65 GATTCAATTTCATTTTCATAAAGAAGGATTTCTCTTTCTGTATCGCGATGAATCGGAACA 124
||| | | || | | ||||||||||||||||||||||||||||||||
Sbjct 59 --TTC-A---C---TT--T-------G-TTTCTCTTTCTGTATCGCGATGAATCGGAACA 99
Query 125 GCCTATACGAAGCTGATGACGATGATGACGATGACGAAGAAGATGACATCGGTGAAGACC 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 GCCTATACGAAGCTGATGACGATGATGACGATGACGAAGAAGATGACATCGGTGAAGACC 159
Query 185 TCGAAGATTTAAGACGCGCATGTATGGTCTCTGACGTTAATTCCGATCAATTCGCGTCAA 244
||||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||
Sbjct 160 TCGAAGATTTAAGACGCGCCTGCATGGTCTCTGACGTTAATTCCGATAAATTCGCGGCAA 219
Query 245 AAACCGGTTCAATTGAACCGGAAGGAGTCGGTGGCGGAGAGATACCGTCGGATTCAGAAA 304
||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 220 AAATCGGTTCAATTGAACCGGATGGAGGCGGTGGCGGAGAGATGCCGTCGGATTCAGAAA 279
Query 305 ACGAAGATGACTTTGAGATGCTTCGTA-CAATTAAGAGCCAATTAGCATCTTCCAAGGAT 363
||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 280 ACGAAGATGACTTTGAGATGCTTCGTAGCA-TTAAGAGCCAATTAGCATCTTCCAAAGAT 338
Query 364 GCGGGTAGAAGCAGTGGTCCTCCCATGGGTTTGTCCTTGCTCTCGGATTCGGAGAGTGAA 423
|||| | |||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 339 GCGGATTTAAGCAGTGGTCCTCCCATTGGTTTATCTTTGCTCTCGGATTCGGAGAGTGAA 398
Query 424 GATGATTTCGAGATGATTCGGAGTATTAAGAGCCAATTGTCATTGTCCATGGATGTGTCC 483
|||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 399 GATGATTTCGAGTTGATTCGGAGCATTAAGAGCCAATTGGCATTGTCCATGGATATGTCT 458
Query 484 CTTCCTCCAATTGGTTTATCTGACGATGAAGAAGATGATGCCTTTGAAACACTTCGTGCT 543
|||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 459 CTTCCTTCAATTGGTTTATCTGACGATGACGAAGATGATGCCTTTGAAACCCTTCGAGCT 518
Query 544 ATTCGTAGGCGATTCTCTGCTTATAAGAATTTCGATTCGGAAGGAAAATTCATGAATGAT 603
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 519 ATTCGTAGGCGATTCTCTGCTTATAAGAATTTCGATTCGGAAGGAAATTTCATGAATGAT 578
Query 604 TCTCACGGGAAGAAAAAGCAGGTACATAACTCGGACAATGAACCTTCAAGCGAAATATTG 663
|||| |||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||
Sbjct 579 TCTCCCGGGAAGAAAAAGCAGGTACATGACTTGGATAATGAACCTTCAAGCGAATTATTG 638
Query 664 AGTAGATCTAATACTTGTGAAAGCTTTCCAGATCACGGGAAATCAGTTGTCACTGTGCCA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 639 AGTAGATCTAATACTTGTGAAAGCTTTCCAGATCACGGGAAATCAGTTGTCACAGTGCCA 698
Query 724 GACTCAGAGGATGTACA 740
|| ||||||||||||||
Sbjct 699 GATTCAGAGGATGTACA 715
Score = 424 bits (229), Expect = 2e-117
Identities = 260/275 (95%), Gaps = 1/275 (0%)
Strand=Plus/Plus
Query 755 CAGCTGCGAGTTCAAGTTTCCCTGAAGCTGCACGAGCGTTTGTTGATGCAATCAGGAGAA 814
||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
Sbjct 766 CAGCTGCGAGTTCAAGTTTCCCTAAAGCTGCACTAGCCTTTGTTGATGCAATCAGGAGGA 825
Query 815 ACAGAGCATATCAGAAATTTCTTAGAGGAAAATTGGCAGAAATTGAAGCAACGATCGAGC 874
|||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 826 ACAGGGCATATCAGAAATTTCTTAGAAGAAAATTGGTAGAAATTGAAGCAACGATCGAGC 885
Query 875 AGAACGAGAAACACAAGAAAAATGTTAGAATAGTCAAAGATTTTCAAGCTTCTTGCAAGA 934
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 886 AGAACGAGAAACACAAGAAAAATGTTAAAATAGTTAAAGATTTTCAAGCTTCTTGCAAGA 945
Query 935 GAATTACTAAACTGGCACTCTGTCAGAGGAAAGATCCTCGTGTCGAATTAATCTCAACAC 994
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 946 GAATTACTAAACTGGCACTCTCTCAGAAGAAAGATCCTCGTGTCGAGTTAATCTCAACAC 1005
Query 995 GGAAATCTGGGCCTTGTGATAGCTCCGAGG-TAAT 1028
| ||||||| |||||||||||||||||||| ||||
Sbjct 1006 GAAAATCTGAGCCTTGTGATAGCTCCGAGGGTAAT 1040
Score = 322 bits (174), Expect = 9e-87
Identities = 205/220 (93%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 2437 ACTGTTTGTGAAAATGAACCAAACAATGGAGGAGAGGAGAGGATGTTGGCATTGGAATGT 2496
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 2298 ACTGTTTGTGAAAATGAACCAAACAATGGAGGAGAGGAGAGGTTGTTGGAATTGGAATGT 2357
Query 2497 GATAACGAGATCCAAGACAATGCAAAGGAGAAACGAAA-ACGAAGACGCAAAAGTGTTGC 2555
|||||||||||| || ||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 2358 CATAACGAGATCCTAGGCAATGCAAAGGAGAAAC-AAAGACGAAAACGCAAAAGTGTTGC 2416
Query 2556 AGAAACATCTAACAACACCACTGGTTTaaaaaaaCTTACGCCTAGGAGAAGGAAAATATC 2615
||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| | ||
Sbjct 2417 AGAAACATCGAACAACAACACTGGTTTAAAAAAACTTACGCCTAGGAGAAAGAAAGTGTC 2476
Query 2616 TGCAGTTGTTCCTATTAAGAACCAAGATGCACCAAATTAG 2655
|||||| |||||||| ||||||||||||||||||||||||
Sbjct 2477 TGCAGTAGTTCCTATCAAGAACCAAGATGCACCAAATTAG 2516
> Ahg947372 jgi|Araly1|947372|scaffold_703601.1
Length=1916
Score = 1522 bits (824), Expect = 0.0
Identities = 1086/1210 (90%), Gaps = 28/1210 (2%)
Strand=Plus/Plus
Query 1028 TTGGGCCTTGTGATAGCTT-CGAGGGTAATGATAAAAAGATATCTCCTTTGACGTTGGGT 1086
||| |||||||||| | || ||||| ||||||| ||||||||||||||| | |||||||
Sbjct 697 TTGAGCCTTGTGAT-GGTTCCGAGGATAATGATGAAAAGATATCTCCTTCCATGTTGGGT 755
Query 1087 CCAGC-GGAAAACCCTTGTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAATTTC 1145
||| | ||||||||| ||||||| || |||||||||||||||||||||||||||| |||
Sbjct 756 CCA-CGGGAAAACCCCTGTGTTGCAAGTTATAGGATGGCACTAGAGAAATATCCAGTTTT 814
Query 1146 AGTGAAACGCAGAAAATGGTCTACTGAGGAGAACAAAAACCTCGCAAAAGGTTTAAAACA 1205
|| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 815 AGAGGAACGCAGAAAATGGTCTACTGAGGAGAACAAAAACCTTGCAAAAGGTCTAAAACA 874
Query 1206 AGAAGTTCAAAAGATACTGCTTTCTGAAGCAATTGAACGGTCCAGTGACTTGGAAGGAGC 1265
| |||||||||| |||||||||||||| || ||||||| ||||||||||| ||||||| |
Sbjct 875 ACAAGTTCAAAAAATACTGCTTTCTGAGGCTATTGAACAGTCCAGTGACTGGGAAGGATC 934
Query 1266 TACATATGATATAGACACTATCAATGAATCGATCGGAAATCTTGAGATCACACCAGAAAT 1325
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 935 TACATATGATATAGACACCATAAACGAATCGATCGGAAATCTTGAGATCACACCAGAAAT 994
Query 1326 GATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTCGTTGGATATCAAGGACCGTTCTGC 1385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 995 GATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTCGTTGGATATCAAGGACCGTTCTTC 1054
Query 1386 TGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGTG 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1055 TGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGCTCCGTG 1114
Query 1446 GACTGCAGCAGAGGACAAAAACCTACTCCGAACTATCGA-ACAAACGAGTCTTACAGACT 1504
||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||
Sbjct 1115 GACTGCAGCAGAGGACAAAAACCTACTCCGAGTTATCGAGAAAAA-GAGTCTTACAGACT 1173
Query 1505 GGGTTGATATCGCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGAT 1564
|| ||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1174 GGCTTGGCATCGCGGTATCATTAGGGACAAATAGGACCCCATTTCAATGTCTGGCTCGAT 1233
Query 1565 ATCAGAGAAGCTTGAATCCAAGCATATTGAAAAAAGAATGGACTGCAGAGGAAGATGACC 1624
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1234 ATCAGAGAAGCTTGAATCCAAGCATATTGAGAAAAGAATGGACTGCAGAGGAAGATGACC 1293
Query 1625 AACTTCGTACTGCAGTAGAGTTATTTGGGGAGAAAGACTGGCAATCTGTTGCAAATGTAT 1684
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1294 AACTTCGTGCTGCAGTAGAGTTATTTGGCGATAAAGACTGGCAATCTGTTGCAAATGTAT 1353
Query 1685 TAAAAGGAAGAACTGGAACTCAGTGCTCGAATAGATGGAAAAAGTCGCTTCGCCCTACCA 1744
||||||||||| ||||| || ||||| |||||||||||||| || ||| |||||||||
Sbjct 1354 TAAAAGGAAGATTTGGAAAACAATGCTCAAATAGATGGAAAAATTCACTTTGCCCTACCA 1413
Query 1745 GAAAAGGGACATGGAGCTTAGAGGAAGACAAACGTGT-AAAGGTAGCTGTGACACTCTTT 1803
||||||||| |||||||| |||||||||||||||| | |||| |||||||||||||||||
Sbjct 1414 GAAAAGGGAGATGGAGCTCAGAGGAAGACAAACGTCTGAAAG-TAGCTGTGACACTCTTT 1472
Query 1804 GGATCTCAAAACTGGCATAAAATTTCT-CAGTTTGTTCCTGGACGGACT-CAGACTCAGT 1861
||| || |||| |||| || |||||| | |||||||||||||||||| || | |||||
Sbjct 1473 GGAGCTAAAAATTGGCCGAAGATTTCTTC-GTTTGTTCCTGGACGGACCGCA-AGTCAGT 1530
Query 1862 GTCGGGAGAGATGGTTAAATTGTTTAGA-TCCCAAAGTAAATCGTGGGAAGTGGACTGAG 1920
|||| ||||||||| || ||| |||||| ||| ||| |||| ||||||||||||| |||
Sbjct 1531 GTCGAGAGAGATGGCTAGATTCTTTAGAGTCCAAAAA-AAATTGTGGGAAGTGGACCGAG 1589
Query 1921 GAAGAGGATGAAAAGTTGAGAGAAGCAATTGCAG-AGCATGGATATAGCTGG-TCTAAGG 1978
||||||||| |||||||||||||||||||||||| | || |||||||||||| || ||||
Sbjct 1590 GAAGAGGATCAAAAGTTGAGAGAAGCAATTGCAGTA-CACGGATATAGCTGGGTC-AAGG 1647
Query 1979 TGGCTACTA-ATCTGTCATGT-CGTACTGACAATCAGTGCTTGAGGAGATGGAAGAGAT- 2035
||||| | | || |||| | | |||||||||| |||||||| |||||||||||||| |
Sbjct 1648 TGGCTTC-ACATGTGTC-TCTTCGTACTGACAGTCAGTGCTCGAGGAGATGGAAGAC-TC 1704
Query 2036 TATATCCTCATCAAGTGGCT-CTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGCTAGT 2094
|| ||||||| | |||| | ||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 1705 TAAATCCTCACCTAGTG-CAACTTTTACTAGAAGCTAGAAAGTTACGAAAAGAAGCTACT 1763
Query 2095 GTAGGTAATTTTGTTGATCGGGAATCAGAGCGTCCTGCTCT-TGTCACAAGCCCTATTTT 2153
| ||||||||||||||||||||||||||||||||||||| | | || || ||||||||||
Sbjct 1764 GCAGGTAATTTTGTTGATCGGGAATCAGAGCGTCCTGCT-TATATCGCAGGCCCTATTTT 1822
Query 2154 GGCACTACCGGATATATCTCTAGAGCCAGAACCCGATAGTGTAGCCCTGAAGAAGAAACG 2213
||||||||| || |||||||||| ||||||| |||||| || ||||||| ||||||||||
Sbjct 1823 GGCACTACCAGAGATATCTCTAGCGCCAGAATCCGATATTGCAGCCCTGGAGAAGAAACG 1882
Query 2214 CAAAGCCAAG 2223
||||||||||
Sbjct 1883 CAAAGCCAAG 1892
Score = 121 bits (65), Expect = 3e-26
Identities = 129/157 (82%), Gaps = 15/157 (10%)
Strand=Plus/Plus
Query 476 ATGTGTCCCTTCCTC-CAATTGGTTTATCTGACGATGAAGAAGATGATGCCTTTGAAACA 534
|||||||||| |||| | ||||||||||||||||||||||||||||| || || |
Sbjct 223 ATGTGTCCCTCCCTCTC-ATTGGTTTATCTGACGATGAAGAAGATGAAACCCTT----C- 276
Query 535 CTTCGTGCTATTC-GTAGGCGATTCTCTGCTTATAAGAA-TTTCGATTCGGAAGGAAAAT 592
| || |||| | | |||||||||||||| ||||| || ||| ||| | |||||||| |
Sbjct 277 -T-CG--CTATACAG-AGGCGATTCTCTGCATATAA-AAGTTTTGATCCCGAAGGAAATT 330
Query 593 TCATGAATGATTCTCACGGGAAGAAAAAGCAGGTACA 629
||||||||||||||| | ||||||||| |||||||||
Sbjct 331 TCATGAATGATTCTCCCAGGAAGAAAAGGCAGGTACA 367
> Ahg354789 jgi|Araly1|354789|fgenesh1_pg.C_scaffold_7001962
Length=2334
Score = 1343 bits (727), Expect = 0.0
Identities = 1276/1528 (84%), Gaps = 89/1528 (6%)
Strand=Plus/Plus
Query 750 TATGCCAGCTGCGAGTTCAAGTTTCCCTGAAGCTGCACGAGCGTTTGTTGATGCAATCAG 809
|||||||||| | |||||| |||||||||||||||||| ||| ||| ||||||||||| |
Sbjct 576 TATGCCAGCTACAAGTTCAGGTTTCCCTGAAGCTGCACTAGCCTTTCTTGATGCAATCCG 635
Query 810 G-AGAAACAGAG-CATATCAGAAATTTCTTAGAGGAAAATTG-GCAGAAATTGAAGCAAC 866
| || ||||| | ||||||||| |||||| || || ||||| | ||||| ||||||||
Sbjct 636 GAAG-AACAG-GTTATATCAGAAGTTTCTTCGAAGACAATTGAG-TGAAATCGAAGCAAC 692
Query 867 GATCGAGCAGAACGAGAAACACAAGAAAAATGTT-AGAATAGTCAAAGATTTTCAAGCTT 925
||| ||||||||||||||||||| |||||||||| || ||||| ||||||||| ||||||
Sbjct 693 GATTGAGCAGAACGAGAAACACAGGAAAAATGTTAAG-ATAGTTAAAGATTTTGAAGCTT 751
Query 926 CTTGCAAGAGAATTACTAAACTGGCACTCTGTCAGA-GGAAAGATCCTCGTGTCGAATTA 984
||||||||||||||||||||| |||||| | || || ||||||||||||| |||||||||
Sbjct 752 CTTGCAAGAGAATTACTAAACAGGCACTTTCTC-GAGGGAAAGATCCTCGAGTCGAATTA 810
Query 985 ATCTCAACACGGAAATCTGGGCCTTGTGATAGCTCCGAGGTAATTGGGCCTTGTGATAGC 1044
|||||||| | |||||| || | || | ||| | || | ||||
Sbjct 811 ATCTCAACTCCAAAATCTAGG-C---------CT-----G--ATT----C-TG-G-TAGC 846
Query 1045 TTCGAGGGTAATGATAAAAAGATATCTCCTTTGACGT-TGGGTCCAG-CGGAAAACCCTT 1102
| || ||||||||||||||||| |||| |||||| | ||||||| | ||||||| |||
Sbjct 847 TCCGGGGGTAATGATAAAAAGACATCTTATTTGAC-TATGGGTCC-GCCGGAAAATACTT 904
Query 1103 GTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAATTTCAGTGAAACGCAG-AAAA 1161
|||||||||||||||||||||||||||||||||||||| |||| ||| | ||| | |||
Sbjct 905 GTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAGTTTCCGTGGATCGC-GCAAAT 963
Query 1162 TGGTCTACTGAGGAGAACAAAAACCTCGCAAAAGGTTTAAAACAAGAAGTTCAAAAGATA 1221
||| ||||||||||||| |||| || ||||||||| |||||||| |||||||| | | |
Sbjct 964 TGGACTACTGAGGAGAAGGAAAATCTTGCAAAAGGTCTAAAACAACAAGTTCAAGACACA 1023
Query 1222 CTGCTTTC-TGAAGCAATTGAACGGTCCAGTGACTTGGAAGGAGCTACATATGATATAGA 1280
|| | ||| |||||| |||||||||||||||||||||||||| ||||| ||| |||| |
Sbjct 1024 CT-CATTCGTGAAGCTTTTGAACGGTCCAGTGACTTGGAAGGATCTACAGATGGTATAAA 1082
Query 1281 CACTA-TCAATGAATCGATCGGAAA-TCTTGAGATCACACCAGAAATGATTAGGCAGTTT 1338
||| | || |||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1083 CACCATTC-TTGAAGGGAT-AAAAAGTCTTGAGATCACACCAGAAATGATTAGGCAGTTT 1140
Query 1339 CTTCCGAAAATTAACTGGGATTC-GTTGGATATCAAGGACCGTTCTGCTGCAGAATGTGA 1397
||||||||| |||| ||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 1141 CTTCCGAAAGTTAATTGGGA-TCAATTGGATATCAAGAACCGTTCTGCTGCAGAATGTGA 1199
Query 1398 AGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGTGGACTGCAGCAGA 1457
||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||
Sbjct 1200 AGCCCGGTGGATGAGCTCGGATGATCCATTGATTAACAACGGTCCATGGACTGTAGCAGA 1259
Query 1458 GGACAAAAACCTACTCCGAACTATCGAACAAAC--GAGTCTTACAGACTGGGTTGATATC 1515
||||| || ||| | | || | || |||| | || ||||||||||| |||| ||
Sbjct 1260 AGACAATTACATACGCTTATTTA-CCAA-AAACAAGGGTTTTACAGACTGGCTTGACATT 1317
Query 1516 GCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGATATCAGAGAAGC 1575
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GCGGTATCACTGGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGATATCAGAGAAGC 1377
Query 1576 TTGAATCCA-AGCATATTGAAAAAAGAATGGACTGCAGAGGAAGATGACCAACTTCGTAC 1634
||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1378 TTGAATCCAGAT-ATATTGAGAAAAGAATGGACTGCAGAGGAAGATGACCAACTCCGTGC 1436
Query 1635 TGCAGTAGAGTTATTTGGGGAGAAAGACTGGCAATCTGTTGCAAATGTATTAAAAGGAAG 1694
|||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 1437 CGCAGTAGACTTGTTTGGCGAGTCAGACTGGCAATCTGTTGCAAATGTATTACAAGGAAG 1496
Query 1695 AACTGGAACTCAGTGCTCGAATAGATGGAAAAAGTCGCTTCGCCCTACCAGAA-AAGGGA 1753
||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| |||| |
Sbjct 1497 AACTGGACCTCAGTGCTCTAATAGATGGAAAAAGTCGCTTCACCCTAGCAGAACAAGGAA 1556
Query 1754 -C-A---TGGAGCTTAGAGGAAGACAAACG-T-GTAAAGGTAGCTGTGACACTCTTTGGA 1806
| | ||||||| ||||||||||||||| | | |||| ||||||| ||||| ||||||
Sbjct 1557 ACGAAACTGGAGCTCAGAGGAAGACAAACGATTG-AAAG-TAGCTGTAACACTGTTTGGA 1614
Query 1807 TCTCAAAACTGGCATAAAATTTCTCAGTTTGTTCCTGGACGGACTCAG-ACTCAGTGTCG 1865
|| ||||||||| ||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 1615 ACTAAAAACTGGCGTAAAATTGGTCAGTTTGTTCCTGGACGGACGG-GTACTCAGTGTCT 1673
Query 1866 GGAGAGATGGTTAAATTGTTTAGATCCCAAAGT-AAATCGTGGGAAGTGGACTGAGGAAG 1924
||||||||| ||||| ||||||||||||| | |||| |||||||||||| ||||||
Sbjct 1674 AGAGAGATGGGGAAATTCTTTAGATCCCAAACTTAAATT-TGGGAAGTGGACCAAGGAAG 1732
Query 1925 AGGATG-AAAAGTTGAGAGAAGCAATTGCA-GAGCATGGATATAGCTGGTCTAAGGTGGC 1982
|||||| |||| |||||||||||||| | | || |||||| || | |||||||| || ||
Sbjct 1733 AGGATGCAAAA-TTGAGAGAAGCAAT-GAAAGAACATGGACATTGTTGGTCTAAAGTTGC 1790
Query 1983 TAC-TAATCTGTCATGTCGTACTGACAATCAGTGCTTGAGGAGATGGAAGAGATTATATC 2041
| | || | |||| ||||| ||||||| ||||||| ||||||||||||||| |||||||
Sbjct 1791 TTCATA-TATGTCTTGTCGCACTGACAGTCAGTGCGCGAGGAGATGGAAGAGCTTATATC 1849
Query 2042 CTCATCAAGTGGC-TCTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGCTAGTGTAGGT 2100
|||| | || | | |||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 1850 CTCACCTAGCG-CATCTTAGACAAGAAGCTAGAAGGTTACAAAAAGAAGCTACTATAGGT 1908
Query 2101 AATTTTGTTGATCGGGAATCAGAGCGTCCTGCTCTTGTCACAAGCCCTATTTTGGCACTA 2160
||||||||||| || |||||||||||||| | ||||||| | || | |||||||||||
Sbjct 1909 AATTTTGTTGACCGCGAATCAGAGCGTCCAGATCTTGTCGTAGGCGATTTTTTGGCACTA 1968
Query 2161 CCGGATATATCTCTAGAGCCAGAACCCGATAG-TGTAGCCCTGAAGAAGAAACGCAAAGC 2219
| || |||||||| ||||||||| || | ||| || ||| ||||||||| ||| |
Sbjct 1969 GCTGAGATATCTCTTGAGCCAGAA---GA-ACCTGT--CC-TGACGAAGAAACGAAAA-C 2020
Query 2220 CAAG-CA---GAAGAAGTCAGATGCAGA 2243
|||| || ||||||| ||||| ||||
Sbjct 2021 CAAGACATACGAAGAAGGCAGATACAGA 2048
Score = 272 bits (147), Expect = 9e-72
Identities = 208/236 (88%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 505 GACGATGAAGAAGATGATGCCTTTGAAACACTTCGTGCTATTCGTAGGCGATTCTCTGCT 564
||||| || ||||||| ||| |||||||| ||||| ||||||||||| ||||||| ||||
Sbjct 295 GACGAAGATGAAGATGGTGCATTTGAAACCCTTCGCGCTATTCGTAGACGATTCTTTGCT 354
Query 565 TAT-AAGAATTTCGAT-TCGGAAGGAAAATTCATGAATGATTC-TCA--C-GG--GAAGA 616
||| || ||||||||| | ||||||||| |||||||||||||| ||| | || |||||
Sbjct 355 TATGAA-AATTTCGATGT-GGAAGGAAATTTCATGAATGATTCTTCACCCGGGAAGAAGA 412
Query 617 AAAAGCAGGTACATAACTCGGACAATGAACCTTCAAGCGAAATATTGAGTAGATCTAATA 676
|||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 413 AAAAGCAGGTACATGCCTCGGATAATGAACCTTCAACCGAAATATTGAGTAGATCTAATA 472
Query 677 CTTGTGAAAGCTTTCCAGATCACGGGAAATCAGTTGTCACTGTGCCAGACTCAGAG 732
||||||||||||||||||||||||||||||||| ||| || | |||||| ||||||
Sbjct 473 CTTGTGAAAGCTTTCCAGATCACGGGAAATCAGCTGTTACAGAGCCAGATTCAGAG 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100139254105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5