BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18120.1
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1 255 2e-67
Ahg929515 jgi|Araly1|929515|scaffold_301972.1 213 1e-54
Ahg341820 jgi|Araly1|341820|fgenesh1_pg.C_scaffold_3001583 198 3e-50
Ahg929517 jgi|Araly1|929517|scaffold_301974.1 196 1e-49
> Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1
Length=1369
Score = 255 bits (138), Expect = 2e-67
Identities = 266/326 (82%), Gaps = 16/326 (5%)
Strand=Plus/Plus
Query 101 CTGAGTTCTTACTCTGTTATGATTTTACAAGAGAGATATTTGGACCCCCTCTAAGTCTAC 160
|||| ||||||||||||| |||||||||||| |||| |||||||| | ||| ||| |
Sbjct 778 CTGATTTCTTACTCTGTTTTGATTTTACAAGGGAGAGGTTTGGACCGCGTCTGCCTCTGC 837
Query 161 CGTTTCACTCTTTTAATGAAGATACTGTGACTCTATCTAGTGTTAGAGATGAGCAACTTA 220
| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 838 CTTTTCACTCTTTTGTTGAAGATACTGTGACTCTATCTAGTGTTAGAGATAAGCAACTTG 897
Query 221 CAGTGTTATTTGAGAGA-GATGATACAT-TACAGATGGAGATATGGATTACG-A-CTAAG 276
||||||||||| || | | | || ||| ||| | || |||||||||||| | | | |||
Sbjct 898 CAGTGTTATTTCAGCCATGTT-ATGCATCTACCG-TGAAGATATGGATTA-GTAGC-AAG 953
Query 277 ATTGAGCCCGAAA-CAGCGTCGTGGAGCAAG-TTGTTCTTAGCGGTGGGTATGGAACCAC 334
||||||||| || ||| ||||||||| ||| || ||||||||||| | |||| ||||||
Sbjct 954 ATTGAGCCC-AATGCAGTGTCGTGGAGGAAGGTT-TTCTTAGCGGTTGATATGAAACCAC 1011
Query 335 TAACTGGTTTGCAGTTTCAGGTTGCCGCTGGGAATTTCTTTGTTGACGAGGAGAAGAAAG 394
| |||||||| |||||| | || | |||||| ||||||||||||| || |||| ||||
Sbjct 1012 TCACTGGTTTTCAGTTTGACATTAACTCTGGGAGTTTCTTTGTTGACCAGAAGAA-AAAG 1070
Query 395 TT-GTCGTGTTT-TTGGATAAAGACA 418
| | | || || ||| |||||||||
Sbjct 1071 GTCGCCATGGTTCTTG-ATAAAGACA 1095
> Ahg929515 jgi|Araly1|929515|scaffold_301972.1
Length=943
Score = 213 bits (115), Expect = 1e-54
Identities = 210/253 (83%), Gaps = 18/253 (7%)
Strand=Plus/Plus
Query 177 TGAAGATACTGTGACTCTATCTAGTGTTAGAGATGAGCAACTTACAGTGTTATTTGAGAG 236
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 683 TGAAGATACCGTGACTCTATCTAGTGTTAGAGATGAGCAACTTGCAGTGTTATTTCACCG 742
Query 237 A-GATGATACATTACAGATGGAGATATGGATTACGACTAAGATTGAGCCCGAAACAGC-G 294
| | |||| ||||||| ||||||||||||||||||||| ||||||||||| ||| || |
Sbjct 743 ACG-TGATTCATTACATATGGAGATATGGATTACGACTGAGATTGAGCCC-AAAGAGGTG 800
Query 295 TCGTGG---AGCAAGTTGTTCTTAGCGGTGGGTATGGAA-CCACTAACTGGTT-TGCAGT 349
| |||| ||||||||||||||| ||||| ||| || ||||| ||| ||| | || |
Sbjct 801 TGGTGGGGGAGCAAGTTGTTCTTAACGGTGAATATA-AATCCACTTACTTGTTAT-CAAT 858
Query 350 TTC-AGGTTGC-CGCTGGGAATTTCTTTGTTGACGAGGAGAAGAAAGTTGTC-GTG-TTT 405
| | | ||| || ||||| ||||||||||||||||||||||||||| | | ||| |||
Sbjct 859 TCCCAT-TTGAACG-TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCG-CAGTGATTT 915
Query 406 TTGGATAAAGACA 418
|||| || |||||
Sbjct 916 TTGGTTAGAGACA 928
Score = 52.8 bits (28), Expect = 2e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 57 ACGTGGCGTGTCTCTCAAGGGAAATACT 84
||||||||||||||||||||||||||||
Sbjct 572 ACGTGGCGTGTCTCTCAAGGGAAATACT 599
> Ahg341820 jgi|Araly1|341820|fgenesh1_pg.C_scaffold_3001583
Length=873
Score = 198 bits (107), Expect = 3e-50
Identities = 234/293 (80%), Gaps = 17/293 (6%)
Strand=Plus/Plus
Query 138 ATTTGGACCCCCTCTAAGTCTACCGTTTCACTCTTTTAAT-GAAGATACTGTGACTCTAT 196
|||||| || | ||| |||||||||| ||||||| | || | |||| |||||||||||
Sbjct 462 ATTTGGTCCGCGTCTTAGTCTACCGTCTCACTCTAGT-ATGGTCGATAGTGTGACTCTAT 520
Query 197 CTAGTGTTAGAGATGAGCAACTTACAGTGTTATTTGAGAG-AGATGATACATTACAGATG 255
||||||||||||||||||| ||| | ||||||||| || | | | | |||||||||||||
Sbjct 521 CTAGTGTTAGAGATGAGCAGCTTGCTGTGTTATTTCAGCGCA-AGGGTACATTACAGATG 579
Query 256 GAGATATGGATTACGACTAAGATTGAGCCCGAAACAGCGTCGTGGAGCAAGTTGTTCTTA 315
||||||||||||||| |||| |||||||| ||| | ||||| ||||||| ||||||||||
Sbjct 580 GAGATATGGATTACGTCTAACATTGAGCCTGAAGCGGCGTCCTGGAGCATGTTGTTCTTA 639
Query 316 GCGGTGGGTATGGAACCACTAACTGGTTTGCAGTTTCAGGTTGCCGC-TGGGAATTTCTT 374
| ||||| || | || |||| || | | || | | | | | || || ||| ||
Sbjct 640 GTGGTGGATAAGAAAACACTT-CT--TA--C--TT--ATGAT-CAACATGAGAGTTTTTT 689
Query 375 TGTTGACGAGGAGAAGAAAGTTGTCGTG-TTTTTGGATAAAGACACAGAGACG 426
|||||||||||||||||||||||| || |||||| |||||||| |||||||
Sbjct 690 TGTTGACGAGGAGAAGAAAGTTGTTATGGTTTTTGC-TAAAGACAAAGAGACG 741
> Ahg929517 jgi|Araly1|929517|scaffold_301974.1
Length=1402
Score = 196 bits (106), Expect = 1e-49
Identities = 263/334 (79%), Gaps = 29/334 (9%)
Strand=Plus/Plus
Query 98 TCCCTGAG---TTCTTACTCTGTTATGATTTTACAAGAGAGATATTTGGACCCCCTCTAA 154
|||||||| || |||||||||| ||||||||||| |||||||||||||| | ||||
Sbjct 892 TCCCTGAGATCTTTTTACTCTGTTTTGATTTTACAACTGAGATATTTGGACCACGTCTAC 951
Query 155 GTCTACCGTTT-CA-CTCTTTTAATGAAGATA-CTGTGACTCTATCTAGTGTTAGAGATG 211
||||||||||| | ||| || || |||| | |||||||||||||||| |||||| |
Sbjct 952 GTCTACCGTTTAAATCTCGCTT--TGGCGATAGC-GTGACTCTATCTAGTGCTAGAGAAG 1008
Query 212 AGCAACTTACAGTGTTATTTGAGAGAG-ATGATACATTACAGATGGAGATATGGATTACG 270
|||||||| ||||||||| | || | | |||||||||||||||||||||||||||||| |
Sbjct 1009 AGCAACTTTCAGTGTTATGTCAGCG-GTATGATACATTACAGATGGAGATATGGATTA-G 1066
Query 271 -A-CTAAGATTGAGCCCGAAACAGCGTCGTGGAGCAAGTTGTTCTTAGCGGTGGGTATGG 328
| | || |||||||||||| | | || ||||| ||||||||| |||| ||| ||||
Sbjct 1067 TAGCAAA-ATTGAGCCCGAAGCGGTGTTGTGGAACAAGTTGTTAGTAGCAGTGAATATGA 1125
Query 329 AACCACTAACTGG-TTTGC-AGTTTCAGGTTGCCGCTGGGAATTTCTTTGTTGACGAGGA 386
|| |||| || ||| | | ||| | | ||||||||| |||||||||| | |
Sbjct 1126 AAACACTT-CTTACTTTCCCA-TTTAAA----CA--TGGGAATTTTTTTGTTGACGTG-A 1176
Query 387 G-AAGAAAGTTGTCGT-GTTTTTGGATAAAGACA 418
| |||||||| ||||| ||||||| ||||||||
Sbjct 1177 GGAAGAAAGTCGTCGTAGTTTTTGC-TAAAGACA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17513415351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5