BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18130.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929678 jgi|Araly1|929678|scaffold_302135.1 1456 0.0
Ahg474002 jgi|Araly1|474002|fgenesh2_kg.1__3956__AT1G48630.1 1203 0.0
Ahg895620 jgi|Araly1|895620|Al_scaffold_0006_3616 100 2e-20
> Ahg929678 jgi|Araly1|929678|scaffold_302135.1
Length=1074
Score = 1456 bits (788), Expect = 0.0
Identities = 983/1075 (91%), Gaps = 22/1075 (2%)
Strand=Plus/Plus
Query 8 CGCTCTGTTACGCCATTTTCGTGAGTAAGAAGAAGAAACCC-----G----------AAA 52
||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 CGCTCTGTTACGCCATTTTCGTGAGTAAGAAGAAGAAACCCTAAGAGTCTCTCCCCCAAA 60
Query 53 ACCTCAAACCATGGCCGAGGGACTCGTATTGAAGGGCATTATGCGCGCCCACACCGACAT 112
||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 61 ACCTCTAACCATGGCCGAGGGACTCGTATTGAAGGGCACTATGCGGGCTCACACCGACAT 120
Query 113 TGTCACGGCCATCGCTACGCCGATCGACAATTCCGACATCATCGTCACAGCGTCGCGTGA 172
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCACCGCCATCGCTACACCAATCGACAATTCCGACATCATCGTCACAGCGTCGCGTGA 180
Query 173 CAAATCCATCATCCTCTGGAAACTCACAAAGGACGATAAGTCTTACGGTGTTGCTCAGCG 232
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 181 CAAATCCATCATCCTCTGGAAACTCACCAAGGACGACAAGTCTTACGGTGTTGCTCAGCG 240
Query 233 TAGGCTCACAGGTCACTCTCACTTCGTGGAAGATGTTGTTCTCTCATCGGACGGTCAGTT 292
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TAGGCTCACAGGTCACTCTCACTTCGTCGAAGATGTTGTTCTCTCATCGGACGGTCAGTT 300
Query 293 TGCACTCTCCGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTTGCCACGGGAGAAAC 352
||||||||||||||||||||||||||||||||||||||||||||| || || || | |
Sbjct 301 TGCACTCTCCGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTCGCTACTGGTGTCTC 360
Query 353 AACTCGTC-GATTCGTTGGTCATACGAAAGATGTGCTCTCTGTTGCATTCTCTACTGATA 411
||||| | ||||||| || || |||||||||||||||||||| ||||||||| |||||
Sbjct 361 CACTCG-CAGATTCGTCGGACACACGAAAGATGTGCTCTCTGTAGCATTCTCTGTTGATA 419
Query 412 ACCGGCAGATCGTGTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGGTG 471
|||| |||||||| || || |||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 420 ACCGTCAGATCGTATCAGCGTCTCGTGACCGTACGATCAAGCTGTGGAACACACTCGGTG 479
Query 472 AGTGTAAGTATACCATCTCT--G-AAGGTGATGGTCACAAGGAATGGGTTAGTTGTGTTA 528
| || ||||| || |||||| | |||| |||||||||||||||||| |||| ||||| |
Sbjct 480 AATGCAAGTACACGATCTCTGAGCAAGGAGATGGTCACAAGGAATGGATTAGCTGTGTGA 539
Query 529 GGTTTAGTCCTAATACTCTTGTACCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGA 588
||||||| ||||| || ||||| || || ||||| ||||||||||||||| | || ||||
Sbjct 540 GGTTTAGCCCTAACACGCTTGTGCCTACCATTGTTTCTGCTTCTTGGGATCACACCGTGA 599
Query 589 AAGTTTGGAATCTCCAGAACTGTAAGCTGAGGAACTCTCTTGTTGGTCACTCTGGTTACC 648
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGTCTGGAATCTCCAGAACTGTAAGCTGAGGAACTCTCTTGTTGGTCACTCTGGTTACC 659
Query 649 TCAACACTGTTGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTG 708
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCAACACTGTGGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTG 719
Query 709 TTATCTTGTTGTGGGATTTGGCTGAAGGAAAGAAGCTT-TACTCGCTTGAGGCGGGTTCG 767
||||||||||||||||||||||||||||||||||| || || ||||||||||| || |||
Sbjct 720 TTATCTTGTTGTGGGATTTGGCTGAAGGAAAGAAG-TTGTATTCGCTTGAGGCTGGCTCG 778
Query 768 ATTATTCACTCGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGAAT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTATTCACTCGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGAAT 838
Query 828 AGCATTAGGATTTGGGATCTTGAGAGCAAGTCTGTTGTTGAGGACTTGAAGGTTGATCTC 887
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGCATTAAGATATGGGATCTTGAGAGCAAGTCTGTTGTTGAGGACTTGAAGGTTGATCTT 898
Query 888 AAGTCTGAGGCAGAGAAGAATGAAGGTGGTGTTGGAACTGGTAACCAGAAGAAGGTTATC 947
||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 899 AAGGCTGAGGCAGAGAAGACTGATGGTGGTGTTGGAACTGGTAACCAGAAGAAGGTGATT 958
Query 948 TACTGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACACTGAT 1007
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TACTGCACAAGCTTAAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACACTGAT 1018
Query 1008 GGAGTTGTCAGGGTCTGGGGTATTGGTCGTTACTAGAGACACAACAAGATGAAGA 1062
||||||||||| ||||||||||||||||||||||||||||| | |||| |||||
Sbjct 1019 GGAGTTGTCAGAGTCTGGGGTATTGGTCGTTACTAGAGACAGATGAAGAAGAAGA 1073
> Ahg474002 jgi|Araly1|474002|fgenesh2_kg.1__3956__AT1G48630.1
Length=1170
Score = 1203 bits (651), Expect = 0.0
Identities = 884/999 (88%), Gaps = 5/999 (1%)
Strand=Plus/Plus
Query 50 AAAACCTCAAACCATGGCCGAGGGACTCGTATTGAAGGGCATTATGCGCGCCCACACCGA 109
||| ||| |||||||||| || |||||||| ||||| |||| ||| | |||||||| ||
Sbjct 1 AAACCCT-AAACCATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGA 59
Query 110 CATTGTCACGGCCATCGCTACGCCGATCGACAATTCCGACATCATCGTCACAGCGTCGCG 169
||| ||||| |||||||| || ||| |||| ||||||||| | ||||| || |||||||
Sbjct 60 CATGGTCACCGCCATCGCCACACCGGTCGATAATTCCGACGTTATCGTGACCTCGTCGCG 119
Query 170 TGACAAATCCATCATCCTCTGGAAACTCACAAAGGACGATAAGTCTTACGGTGTTGCTCA 229
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 120 TGACAAATCAATCATCCTCTGGAAACTCACAAAGGAAGACAAGTCTTACGGTGTTGCTCA 179
Query 230 GCGTAGGCTCACAGGTCACTCTCACTTCGTGGAAGATGTTGTTCTCTCATCGGACGGTCA 289
||| ||| | || ||||||||||||||||| |||| ||||||||||| || || || ||
Sbjct 180 GCGGAGGATGACTGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACA 239
Query 290 GTTTGCACTCTCCGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTTGCCACGGGAGA 349
|| || ||||||||| ||||||||||||||| |||||||||||||| ||||| || ||
Sbjct 240 ATTCGCTCTCTCCGGATCCTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCCACCGGTGA 299
Query 350 AACAACTCGTCGATTCGTTGGTCATACGAAAGATGTGCTCTCTGTTGCATTCTCTACTGA 409
| |||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 300 ATCAACTCGTCGTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACTGA 359
Query 410 TAACCGGCAGATCGTGTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGG 469
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAACCGTCAGATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGG 419
Query 470 TGAGTGTAAGTATACCATCTCTGAAGGTGATGGTCACAAGGAATGGGTTAGTTGTGTTAG 529
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 TGAGTGTAAGTATACAATCTCTGAAGCTGATGGTCACAAGGAATGGGTTAGTTGTGTTAG 479
Query 530 GTTTAGTCCTAATACTCTTGTACCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGAA 589
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GTTTAGTCCTAATACTCTTGTGCCAACCATTGTATCTGCTTCTTGGGATAAAACTGTGAA 539
Query 590 AGTTTGGAATCTCCAGAACTGTAAGCTGAGGAACTCTCTTGTTGGTCACTCTGGTTACCT 649
||| |||||||||||||| |||||||| |||||| |||||| |||||||||||||||| |
Sbjct 540 AGTGTGGAATCTCCAGAATTGTAAGCTTAGGAACACTCTTGCTGGTCACTCTGGTTACTT 599
Query 650 CAACACTGTTGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTGT 709
|||||||| ||||| || |||||||||||| |||| |||||||||||||||||||||||
Sbjct 600 GAACACTGTGGCTGTGTCACCTGATGGTTCGTTATGTGCCAGTGGTGGGAAAGATGGTGT 659
Query 710 TATCTTG-TTGTGGGATTTGGCTGAAGGAAAGAAGCTT-TACTCGCTTGAGGCGGGTTCG 767
|||||| || ||||||||||||||||| |||||| || || || |||||||| || ||
Sbjct 660 GATCTTGCTT-TGGGATTTGGCTGAAGGGAAGAAG-TTGTATTCTCTTGAGGCTGGCTCT 717
Query 768 ATTATTCACTCGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGAAT 827
|||||||| || |||||||||||||| || || |||||| | ||||| || || ||||||
Sbjct 718 ATTATTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGCTCTGTGCAGCAACAGAGAAT 777
Query 828 AGCATTAGGATTTGGGATCTTGAGAGCAAGTCTGTTGTTGAGGACTTGAAGGTTGATCTC 887
|||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 778 AGCATTAGGATTTGGGATCTTGAGAGTAAGTGTGTTGTTGAGGATTTGAAGGTTGATCTT 837
Query 888 AAGTCTGAGGCAGAGAAGAATGAAGGTGGTGTTGGAACTGGTAACCAGAAGAAGGTTATC 947
||| ||||||| |||||| ||| | | | |||||| || ||| ||| ||||| ||
Sbjct 838 AAGACTGAGGCTGAGAAGTCTGATGCTACTACTGGAACCGGAAACAAGACTAAGGTGATT 897
Query 948 TACTGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACACTGAT 1007
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 898 TACTGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACTTTGTTCAGTGGCTACACTGAT 957
Query 1008 GGAGTTGTCAGGGTCTGGGGTATTGGTCGTTACTAGAGA 1046
|||||| ||||||| ||||||||||||||||| ||||||
Sbjct 958 GGAGTTATCAGGGTTTGGGGTATTGGTCGTTATTAGAGA 996
> Ahg895620 jgi|Araly1|895620|Al_scaffold_0006_3616
Length=327
Score = 100 bits (54), Expect = 2e-20
Identities = 64/69 (93%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 873 TTGAAGGTTGATCTCAAGTCTGAGGCAGAGAAGAATGAAGGTGGTGTTGGAACTGGTAAC 932
||| |||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 205 TTGCAGGTTGATCTTAAGGCTGAGGCAGAGAAGACTGATGGTGGTGTTGGAACTGGTAAC 264
Query 933 CAGAAGAAG 941
|||||||||
Sbjct 265 CAGAAGAAG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5