BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18150.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932542 jgi|Araly1|932542|scaffold_400530.1 780 0.0
Ahg320542 jgi|Araly1|320542|fgenesh1_pm.C_scaffold_4000599 580 7e-165
Ahg319243 jgi|Araly1|319243|fgenesh1_pm.C_scaffold_3002259 516 2e-145
Ahg337885 jgi|Araly1|337885|fgenesh1_pg.C_scaffold_1004450 363 3e-99
Ahg923168 jgi|Araly1|923168|scaffold_104449.1 191 1e-47
Ahg349579 jgi|Araly1|349579|fgenesh1_pg.C_scaffold_6000172 100 2e-20
> Ahg932542 jgi|Araly1|932542|scaffold_400530.1
Length=1435
Score = 780 bits (422), Expect = 0.0
Identities = 1045/1330 (79%), Gaps = 105/1330 (8%)
Strand=Plus/Plus
Query 82 GAAGCAGTAGACTCAATAAGCTCTTTACCTGA-TGTGATCCTCCAACATATCCTCTCCTT 140
|||| |||||||| |||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 90 GAAGGAGTAGACTTAATAAGCTCTTTACCTGATTCT-ATCCTCCAACATATCCTCTCCTT 148
Query 141 TATTCCGACCAAACTCGCCATCACAACTTCCCTCTTGTCAAAACGATGGAGACATGTATG 200
|||||||||||| | ||||||| | | ||||||||||| ||||||||||||||||||||
Sbjct 149 TATTCCGACCAAGTTAGCCATCAGAGCCTCCCTCTTGTCCAAACGATGGAGACATGTATG 208
Query 201 GTGTGATACACCTTCTCTTTCATTTA-ATGATTACAGACTGGAGGCTCCATTTATAGACG 259
||| |||| ||||||||| || ||| |||| | | |||| ||| | | || | |
Sbjct 209 GTGCGATATACCTTCTCTCTC-CTTAGATGACCAGACACTGAAGGAT--ACTT-CA-A-- 261
Query 260 AAACCCTAACTCGCTATACAGCTTC-C--AAGATGATGCGTTTTCACCTCCATACCAGC- 315
|||||||| ||||| | || |||| | ||||| ||| |||||| ||| | |||| |
Sbjct 262 TAACCCTAAATCGCT-T-CA-CTTCTCTGAAGATAATGAATTTTCATCTCAACACCA-CA 317
Query 316 TTG-ATCAACAATGTTCCCCACT-T-AGA-AAGTTGGATCAAGTTCGCCATGTCCCGTAA 371
|| | | | ||| ||||||| | | | | ||| ||| || |||||||||| ||||| ||
Sbjct 318 ATGAAGC-AGAATATTCCCCA-TATCA-ACAAG-TGGGTCGAGTTCGCCATATCCCGCAA 373
Query 372 CGTGGATCATCTGTCCCTGGATCTCTGGAA-TCAAGTTGCCA---ATAAGTTTAAGTTTC 427
|||||| |||| ||||||||| ||||||| | |||| ||| | |||||| || |||
Sbjct 374 CGTGGAGAATCTTTCCCTGGATTTCTGGAACCCTAGTT-CCAGTTACAAGTTTGAGATTC 432
Query 428 CTGATTTCTTCCACATCAATTCATCTCTCAAGCAACTCACTGTTGTGTT-AGACTTTTCT 486
||||||||||| || ||||||||||| | ||||||||||| || ||| || |||| ||
Sbjct 433 CTGATTTCTTCTACGTCAATTCATCTGTTAAGCAACTCACCATTAAGTTAAG-CTTTACT 491
Query 487 GA---TA-CGAT---G-AT--TGCC-A---T----ATGCCTGAAGAAGTTGTACTTGA-G 527
|| || | | | || | || | | || |||||||||||||||||| | |
Sbjct 492 GATCTTATGGTTCCCGCATGCTCCCTATCTTGGACATCCCTGAAGAAGTTGTACTT-ACG 550
Query 528 TACTTGTCTTCTCTCTGATGAATCCATGGCTAACATTCTATTTGGT-TGTCCAATTCTCG 586
|| |||| |||||||||||||||||||||||| ||||||| |||| | ||| ||||||
Sbjct 551 TAATTGTAATCTCTCTGATGAATCCATGGCTAAGATTCTATCTGGTAT-TCCCCTTCTCG 609
Query 587 AGAGCTTAACACTAG-ATCACTGCGGTGGACTAAGGGTTCTTGATCTCAGCAAATCACTG 645
| ||||||||| | | || |||| || |||||||||||| |||||||| |||||||||
Sbjct 610 AAAGCTTAACA-TTGTATTTCTGCAATGAACTAAGGGTTCTGGATCTCAGTAAATCACTG 668
Query 646 CGCCTGAGAACATTAGAA-ATAAACTGTAACATTTGGGTTCCCGAGCTAACGGCAATGCA 704
|| ||||||| || ||| |||||| | || ||||||||||| | || || | | ||
Sbjct 669 CGTTTGAGAACGTT-GAAGATAAACCGCAAAATTTGGGTTCCGGGGCCAA---C-A--CA 721
Query 705 GATTGTGGCTCCACATACCCATTGTCTCAGATTGAGAAACTCTAAATTACCATGTAGTCT 764
|||||||| ||||||| | || |||||||||||||||||||| | |||||||||| | |
Sbjct 722 TATTGTGGCACCACATATCTATCGTCTCAGATTGAGAAACTCTCAGTTACCATGTACTTT 781
Query 765 TGTTGATGTCTCATCACTGAAG--GAAGCTAAACTTAACATTTGCATTGACTCATTTTCT 822
||||||| |||| | || || ||||||| ||| |||||||||||| | || | |
Sbjct 782 TGTTGATCTCTCGT--CTTTAGCCGAAGCTAGACTGGACATTTGCATTGTCCCAATAACC 839
Query 823 AAAACCATCAAGGCTGACTTTCTTCAAGTCACGCTGTTAAAGATGTTGGAAAAGTTGCAC 882
|||| |||||||||| |||||||||| || | | |||||||||| |||||||||||
Sbjct 840 CGAACCTTCAAGGCTGATTTTCTTCAAGACATGGTACTAAAGATGTTAGAAAAGTTGCAG 899
Query 883 AACGTGGAGAAGCTTAC-TTTGGGTGGAAACTTTCTTCAGATTTTATC-CGTTGCCGAGC 940
|| || ||||||||||| |||||| |||||||||||||| ||| |||| | ||||||||
Sbjct 900 AATGTAGAGAAGCTTACTTTTGGG-GGAAACTTTCTTCATATTATATCTC-TTGCCGAGG 957
Query 941 TTCGTGGTGTCCCTTTCCCGATGTTCAAGGTGAAAGATTTGACTCTCGAGACAGTCATCT 1000
|||||||||| | ||| |||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 958 TTCGTGGTGTTCGTTTTCCGATGTTCAAGGTGAAAGACTTGACTCTGGAGACAGTGATCT 1017
Query 1001 TTCAGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAAACTCACCTGATTTAAAGAAGC 1060
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1018 TTCAGTATGTTATTCCTGGTATAGAAAGACTGTTACAAAACTCACCTAATTTAAAGAAGC 1077
Query 1061 TAAC-ATTACTCACAAAGGATTTCTAC-C-ATAAACCGGGTG-AGTATCTTGGCGACCAC 1116
|||| || || | ||| |||| | || | ||| | || | ||||| | | || ||
Sbjct 1078 TAACTAT-ACGCGCAAGGGATACCAACACCATA--C-GGAAGGAGTATATAAACAACTAC 1133
Query 1117 ATGGATTTGGAAGGCTTTAATCTCGATCAATGTTGGAAATCAAAATATGGTGTC-TTTTG 1175
|| | ||| ||||||| || || |||||||| |||| ||||||| |||| ||| ||||
Sbjct 1134 TTGAAGTTGCAAGGCTTAAACCTAGATCAATGCTGGAGATCAAAAGATGGGGTCGTTTTC 1193
Query 1176 GAACAAGTCATGTTTGGATGTAGAGTCAGAGCACGTTGT-TTCATTCGTGGAACTTATGC 1234
||||| | | ||| |||| |||||||| |||||| | |||||| ||||||||| |||
Sbjct 1194 -AACAATTTACGTTGGGATTTAGAGTCAAAGCACGC-GACTTCATTTGTGGAACTTGTGC 1251
Query 1235 TTAAAAACACAAAGGCATT-A-G--A--CAAGATGGTCGTACTGTTGGAA-GACCATTAC 1287
|||||||||||||| |||| | | | |||||| ||| |||| ||| || || | ||||
Sbjct 1252 TTAAAAACACAAAGACATTGAAGTTAGACAAGATAGTCATACTTTTG-AATGAGCGTTAC 1310
Query 1288 GTTAGGTTTAAA---GA-GA--TGGT--T-CCAAGACTTTCTCACAACTATAATATCTCC 1338
|| ||||||| || || |||| | |||| ||||||||| ||| | | | |||||
Sbjct 1311 CTTCGGTTTAAGTTTGAAGAGCTGGTCGTTCCAACACTTTCTCATAAC-A-ACT-TCTCC 1367
Query 1339 ATTGCCCTCT 1348
||||| ||||
Sbjct 1368 ATTGCGCTCT 1377
> Ahg320542 jgi|Araly1|320542|fgenesh1_pm.C_scaffold_4000599
Length=918
Score = 580 bits (314), Expect = 7e-165
Identities = 624/770 (81%), Gaps = 35/770 (5%)
Strand=Plus/Plus
Query 507 CCTGAAGAAGTTGTACTTGA-GTACTTGTCTTCTCTCTGATGAATCCATGGCTAACATTC 565
|||||||||||||||||| | ||| |||| | |||||||||||||||||||||| ||||
Sbjct 33 CCTGAAGAAGTTGTACTT-ATGTAATTGTAATATCTCTGATGAATCCATGGCTAAGATTC 91
Query 566 TATTTGGTTGTCCAATTCTCGAGAGCTTAACACTAG-ATCACTGCGGTGGACTAAGGGTT 624
||| |||| |||| ||||||| |||||||| | | || ||||| | ||||||||||
Sbjct 92 TATCTGGTAGTCCCCTTCTCGAAAGCTTAAC-TTTGTATTTCTGCGATCAACTAAGGGTT 150
Query 625 CTTGATCTCAGCAAATCACTGCGCCTGAGAACATTAG-AAATAAACTGTAACATTTGGGT 683
|| |||||||||||||||||||| ||||||| || | |||||||| | |||||||||||
Sbjct 151 CTGGATCTCAGCAAATCACTGCGTTTGAGAACGTT-GAAAATAAACCGCAACATTTGGGT 209
Query 684 TCCCGAGCTAACGGCAATGCAGATTGTGGCTCCACATACCCATTGTCTCAGATTGAGAAA 743
|| | || ||| || || |||||||| ||||||| |||| |||||||||||| |||
Sbjct 210 TCTGGGGCCAAC-GC-AT----ATTGTGGCACCACATATCCATCGTCTCAGATTGACAAA 263
Query 744 CTCTAAATTACCATGTAGTCTTGTTGATGTCTCATCACTGAAG--GAAGCTAAACTTAAC 801
|||| | |||||||||| | ||||| || |||| | || || ||||||| ||| ||
Sbjct 264 CTCTCAGTTACCATGTACTTTTGTTAATCTCTCGT--CTTTAGCCGAAGCTAGACTGGAC 321
Query 802 ATTTGCATTGACTCATTTTCTAAAACCATCAAGGCTGACTTTCTTCAAGTCACGCTGTTA 861
|||||||||| | || | | || | || ||||||| |||||||||| || | || ||
Sbjct 322 ATTTGCATTGTCCCAATAACCGGAATCTTCGAGGCTGATTTTCTTCAAGACATGGTGCTA 381
Query 862 AAGATGTTGGAAAAGTTGCACAACGTGGAGAAGCTTAC-TTTGGGTGGAAACTTTCTTCA 920
|||||||| ||||||||||| || || ||||||||||| |||| | ||||||||||||||
Sbjct 382 AAGATGTTAGAAAAGTTGCAGAATGTAGAGAAGCTTACTTTTGAG-GGAAACTTTCTTCA 440
Query 921 GATTTTATC-CGTTGCCGAGCTTCGTGGTGTCCCTTTCCCGATGTTCAAGGTGAAAGATT 979
||| |||| | |||||||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct 441 AATTATATCTC-TTGCCGAGGTTCGTGGTGTTCCTTTTCCGATGTTCAAGGTGAAAGATT 499
Query 980 TGACTCTCGAGACAGTCATCTTTCAGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAA 1039
|||| || || ||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 500 TGACGCTGGAAACAGTGATATTTCAGTATGTTATTCCTGGTATAGAAAGACTGTTACAAA 559
Query 1040 ACTCACCTGATTTAAAGAAGCTAAC-ATTACTCACAAAGGATTTCTAC-C-ATAAACCGG 1096
||||||||||||||||||||||||| || || | ||| |||| | || | ||| | ||
Sbjct 560 ACTCACCTGATTTAAAGAAGCTAACTAT-ACGCGCAAGGGATACCAACACCATA--C-GG 615
Query 1097 GTGA-GTATCTTGGCGACCACATGGATTTGGAAGGCTTTAATCTC-GATCAATGTTGGAA 1154
| || | || | | || || || | ||| ||||||| || | | |||||||||||||
Sbjct 616 GAGAAGGATATAAACAACTACTTGCAGTTGCAAGGCTTAAACC-CAGATCAATGTTGGAG 674
Query 1155 ATCAAAATATGGTGTCTTTTGGAACAAGTCATGTTTGG-ATGTAGAGTCAGAGCACGTTG 1213
||||||| |||| ||||||| ||||| | | || || || |||||||| |||||| |
Sbjct 675 ATCAAAAGATGGGGTCTTTTTCAACAATTTACCTT-GGTATTTAGAGTCAAAGCACGC-G 732
Query 1214 T-TTCATTCGTGGAACTTATGCTTAAAAACACAAAGGCATTAGACA-AGA 1261
|||||| ||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 733 ACTTCATTTGTGGAACTTGTGCTTAAAAACACAAAGACATTAGACATAGA 782
> Ahg319243 jgi|Araly1|319243|fgenesh1_pm.C_scaffold_3002259
Length=780
Score = 516 bits (279), Expect = 2e-145
Identities = 654/823 (79%), Gaps = 74/823 (9%)
Strand=Plus/Plus
Query 553 ATGGCTAACATTCTATTTGGTTGTCCAATTCTCGAGAGCTTAACACTAG-ATCACTGCGG 611
|||||||| ||||||| ||||||||| | ||| ||||| |||| | | | | ||||
Sbjct 1 ATGGCTAAGATTCTATCTGGTTGTCCGAGTCTTGAGAGGTTAA-AGTTGTGTTTCTGCAA 59
Query 612 TGGACT-AAGGGTTCTTGATCTCAGCAAATCACTGCGCCTGAGAACATTAGAAATAAACT 670
|| ||| || | |||||||||||| ||||||| |||| ||||||||||| |||||||||
Sbjct 60 TGCACTCAA-GATTCTTGATCTCAACAAATCAATGCGTCTGAGAACATTGGAAATAAACA 118
Query 671 GTAACATTTGGGTTCCCGAGCTAACGG-CAATGCAGATTGTGGCTCCACATACCCATTGT 729
| || | |||||| | ||| || | ||||||||||| ||| ||| |||||||
Sbjct 119 GCGAC-CCTCAGTTCCC---C---CGGACACTACAGATTGTGGCACCATATATCCATTGT 171
Query 730 CTCAGATTGAGAAA-CTCT-A--AATTACCATGTAGTCTT-GTTGATGTCTCATCACTGA 784
|||| ||||| ||| |||| | | ||||||||| || || ||||||||||| | ||
Sbjct 172 CTCATATTGA-AAAGCTCTCATCATTTACCATGT-GTTTTAGTTGATGTCTCGT--CTTT 227
Query 785 AG--GAAGCTAAACTTAACATTTGCATTGAC-TCATTTTCTAAAACCATCAAGGCTGACT 841
|| ||||||| ||| |||||| |||||| | ||| |||| |||| || ||| ||| |
Sbjct 228 AGTCGAAGCTAGACTGAACATTAGCATTG-CATCAGTTTC-AAAAACA--AAGAATGA-T 282
Query 842 -TTCTTCAAGTCACGCTGTTAAAGATGTTGGAAAAGTTGCACAACGTGGAGAAGCTTAC- 899
||||||||||| | || |||| ||||| ||||||||||| |||||||||||||||||
Sbjct 283 AGTCTTCAAGTCATGGTGCTAAATATGTTAGAAAAGTTGCAGAACGTGGAGAAGCTTACT 342
Query 900 TTTG--GGTGGAAACTTT-CTTCAGATTTTATCCGTTGCCGAGCTTCGTGGTGTCCCTTT 956
|||| || ||||| ||| ||| |||| ||||| | ||||||||||||||||| |||||
Sbjct 343 TTTGTTGGGGGAAA-TTTGCTTAAGATATTATCTATGGCCGAGCTTCGTGGTGTTCCTTT 401
Query 957 CCCGATGTTCAAGGTGAAAG-ATTTGACTCTCGAGACAGTCATCTTTCAGTATGTTATTC 1015
||||||||||| || ||| ||||||||| |||| ||| ||||||| |||||||||||
Sbjct 402 TCCGATGTTCAA-GTTTAAGTCTTTGACTCTTGAGAGAGTGATCTTTCGGTATGTTATTC 460
Query 1016 CTGGTATAGAAAGAGTGTTACAAAACTCACCTGATTTAAAGAAGCTAACATTACTCACAA 1075
|||||||||||||||||||| ||||||||||| |||||||||||||| || | ||||
Sbjct 461 CTGGTATAGAAAGAGTGTTAAAAAACTCACCTAATTTAAAGAAGCTA-CA---C--ACAA 514
Query 1076 AGGATTTCTACCATAAACCGGGTGAGTATCTTGGCGACCACATGGATTTGGAAGGCTTTA 1135
|||||| ||||||||||| | ||| ||||||||||||| || |||||||| ||| |||||
Sbjct 515 AGGATTGCTACCATAAACAGCGTGTGTATCTTGGCGACTACGTGGATTTGCAAGCCTTTA 574
Query 1136 ATCTCGATCAATGTTGGAAATCAAAATATGGTGTCTTTTGGAACAAGTCATGTTTGGATG 1195
|||| ||||||||||||| |||||||||||||| || || | | |
Sbjct 575 ATCTGGATCAATGTTGGAGATCAAAATATGGTG--------AA---GT--T-T--GCC-- 616
Query 1196 TAGAGTCAGAGCACGTTGTTTCATTCGTGGAACTTATGCTTAAAAACACAAAGGCATTA- 1254
|||| || | |||||||||||| |||| |||| ||||||||| ||||||||||||
Sbjct 617 -AGAG-CA---C--GTTGTTTCATTCATGGACCTTACGCTTAAAAATACAAAGGCATTAT 669
Query 1255 ----GACAAGATGGTCGTACTGTTGGAAGACCATTACGTTAGGTTTAAAGAGATGGTTCC 1310
|||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||
Sbjct 670 ATTAGACAAGATGGTC-TACTGTTGGAAGACCATAACCTTAGGTTTAAAGAGCTGGTGCC 728
Query 1311 AAGACTTTCTCACAACTATAATATCTCCATTGCCCTCTACACC 1353
|| |||| ||||||||| |||| |||| |||||||||| |||
Sbjct 729 AACACTTCCTCACAACTGTAATGTCTCTGTTGCCCTCTATACC 771
> Ahg337885 jgi|Araly1|337885|fgenesh1_pg.C_scaffold_1004450
Length=1287
Score = 363 bits (196), Expect = 3e-99
Identities = 594/778 (76%), Gaps = 59/778 (8%)
Strand=Plus/Plus
Query 617 TAAGGGTTCTTGATCTCAGCAAATCACTGCGCCTGAGAACATTAGAAATAAACTGTAACA 676
||| |||||||||||||||||||| ||| | |||||||||||||||||||| | |||
Sbjct 516 TAA-GGTTCTTGATCTCAGCAAATTGTTGCACTTGAGAACATTAGAAATAAACAGCCACA 574
Query 677 TTTGGGTTCCCGAGCTAACGG-CAATGCAGATTGTGGCTCCACATACCCATTGTCTCAGA 735
|| ||| || | || ||| ||||||||| || ||||||| ||||||||| |||
Sbjct 575 -TTAAGTT-----TCT-AGGGCCAACGCAGATTGTTGCACCACATATCCATTGTCTTAGA 627
Query 736 TTGAGAAACTCTAAATTACCATGTAGTCTT-GTTGATGTCTCATCACTGAA-GGAAGCTA 793
|||| | |||| |||||||||||| | || |||||| |||| || | || ||||| |
Sbjct 628 TTGATAGCCTCTCAATTACCATGTACT-TTAGTTGATATCTCGTC-TTTAACCGAAGCGA 685
Query 794 AACTTAACATTTGCATTGACTCATTTTCTAAAACCATCAAGGCTGACTTTCTTCAA-GTC 852
|||| ||||||| ||| | ||| | | | | |||||||||| |||| |||| ||
Sbjct 686 AACTGGACATTTGTATTAAATCAAGAGATGAGATCTTCAAGGCTGATTTTCCTCAACTTC 745
Query 853 ACG-C-T-GT--TAAAGATGTTGGAAAAGTTGCACAACGTGGAGAAGCTTACTTTGGGTG 907
| | | | || || ||||| ||||||| | || || || |||||||| ||||| ||||
Sbjct 746 AAGCCATGGTGCTAGAGATGCTGGAAAAACTACAGAATGTTGAGAAGCTAACTTTTGGTG 805
Query 908 GAAACTTTCTTCAGATTTTATC-CGTTGC-CGAGCTTCGTGGTGTCCCTTTCCCGATGTT 965
|||||||||||||||||||||| | |||| | | |||||||||| ||||| ||||||||
Sbjct 806 GAAACTTTCTTCAGATTTTATCTC-TTGCTGGTG-TTCGTGGTGTTCCTTTTCCGATGTT 863
Query 966 CAAGGTGAAAGA-TTTGACTCTCGAGACAGTCATCTTTCAGTATGTTATTCCTGGTATAG 1024
||||| ||| | ||||| ||| || || || ||||||||||||||||||||||||||||
Sbjct 864 AAAGGTCAAA-ACTTTGATTCTTGAAACGGTAATCTTTCAGTATGTTATTCCTGGTATAG 922
Query 1025 AAAGAGTGTTACAAAACTCACCTGATTTAAAGAAGCTAACATTACTCA-CAAAGGATTTC 1083
||||| |||||||||||||| ||| ||||||||||||| ||| | ||| ||||| |
Sbjct 923 AAAGATTGTTACAAAACTCATTTGAATTAAAGAAGCTAATGGTACG-AGCAAGGGATTGC 981
Query 1084 TAC-C-ATAAACCGGGTGAGT-ATCTTGGCGACC-ACATGGATTTGGAAGGCTTTAATCT 1139
|| | ||| ||||| |||| | |||| | | || |||| | |||||| |||
Sbjct 982 AACACCATA--CCGGG-GAGTTA-CTTGACAAATTACTTGGACTCACTAGGCTTGGATC- 1036
Query 1140 CGATCA-ATGTTGGAAATCAAAATATGGT--G-TC-TTTTGGAACAAGTCATGTTTGGA- 1193
| | || |||||||| ||| ||| |||| | || ||||| ||||| || | |||
Sbjct 1037 CAAACATATGTTGGAGATCGAAAGATGGGAAGGTCATTTTG-AACAAATCCCATC-GGAA 1094
Query 1194 TGTAGAGTCAGAGCACGTTGTTTCATTCGTGGAACTTATGCTTAAAAACACAAAG-GCAT 1252
| ||||| || |||| ||| ||| ||| | ||| ||| |||||||||||||||| || |
Sbjct 1095 TATAGAGACAAAGCATGTTACTTCGTTCATAGAATTTACGCTTAAAAACACAAAGAGC-T 1153
Query 1253 TAGACAAGATGGTCGTACTGTTGGAAGA-C----CATTACGTT--AGGTTTAAAGAGATG 1305
|||| ||||||||||||| |||||| || | ||||| ||| ||||||||||| ||
Sbjct 1154 TAGATAAGATGGTCGTACAGTTGGACGAACGTTACATTA-GTTTTAGGTTTAAAGACTTG 1212
Query 1306 GTTCCAAGACTT-TCTCACAACTATAATATCTCCATTGCCCTCTACACCTTCAAGCCG 1362
|| |||| |||| | || |||| ||||| ||||||||| |||| || | |||||||
Sbjct 1213 GTACCAACACTTAT-TCCCAACAATAATGTCTCCATTGGGCTCT-CAAC--CAAGCCG 1266
> Ahg923168 jgi|Araly1|923168|scaffold_104449.1
Length=805
Score = 191 bits (103), Expect = 1e-47
Identities = 143/162 (88%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 922 ATTTTATC-CGTTGCCGAGCTTCGTGGTGTCCCTTTCCCGATGTTCAAGGTGAAAGATTT 980
|||||||| | |||||||| |||||||||| ||||| |||||||| || |||||| ||||
Sbjct 591 ATTTTATCTC-TTGCCGAGGTTCGTGGTGTTCCTTTTCCGATGTTGAAAGTGAAATATTT 649
Query 981 GACTCTCGAGACAGTCATCTTTCAGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAAA 1040
|||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 650 GACTCTTGAGACTGTAATCTTCCGGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAAA 709
Query 1041 CTCACCTGATTTAAAGA-AGCTAACATTACTCACAAAGGATT 1081
||||||||||||||| | |||||||| ||| | ||||| |||
Sbjct 710 CTCACCTGATTTAAA-ACAGCTAACAGTACACGCAAAGAATT 750
> Ahg349579 jgi|Araly1|349579|fgenesh1_pg.C_scaffold_6000172
Length=1431
Score = 100 bits (54), Expect = 2e-20
Identities = 81/94 (86%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 121 CTCCAACATATCCTCTCCTTTATTCCGACCAAA-CTCGCCATCACAACTTCCCTCTTGTC 179
|||||||||||| |||||| |||||||| |||| | || |||| ||| ||| |||||||
Sbjct 133 CTCCAACATATCTTCTCCTATATTCCGA-CAAAGTTTGCTATCAGAACATCCGTCTTGTC 191
Query 180 AAAACGATGGAGACATGTATGGTGTGATACACCT 213
||||||||||||||||||||||| || ||||||
Sbjct 192 AAAACGATGGAGACATGTATGGTCCGAGACACCT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5