BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18160.3
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479308 jgi|Araly1|479308|fgenesh2_kg.3__2009__AT3G18160.1 1777 0.0
> Ahg479308 jgi|Araly1|479308|fgenesh2_kg.3__2009__AT3G18160.1
Length=1436
Score = 1777 bits (962), Expect = 0.0
Identities = 1093/1156 (95%), Gaps = 9/1156 (1%)
Strand=Plus/Plus
Query 80 GGAAACATAGAAGGAAGATTTTGGTGACGACGACTTGTTTGGGAAGTGGGTATTTGCTCT 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 284 GGAAACATAGAAGGAAGATTTTGGTGACGACGACTTGTTTGGGAAGTGGGTATTTACTCT 343
Query 140 ATAAACTATACAATGCCCATACTCGTAAGCTCGCTGATTTGGAACGAGAGCTTGCTAATG 199
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 344 ACAAACTATACAATGCTCATACTCGTAAGCTCGCTGATTTGGAACGAGAGCTTGCTTATG 403
Query 200 AGCGTGAAAACGACGAGATCATCAAAACCCAAATGAAGGCACATTTCGATAACATTCAGA 259
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 404 AGCGTGAAAATGACGAGATCATCAAAACCCAAATGAAGGCACATTTTGATAACATTCAGA 463
Query 260 TGATTGCTGATACTACTACATTGCCTCACGCAATTCATCACTTGAGTAGTCGTGTAGTTG 319
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 464 TGATTGCTGATACTACTACATTGCCTCACGCAATGCATCACTTGAGTAGCCGTTTAGTTG 523
Query 320 AAGAGATTGATGTCTCGAGTATTATGGATAAGCTAAGCAAAGGCAAAGGAATATTGATTC 379
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 524 AAGAGATTGATGTCTCTAGTATTATGGATAAACTAAGCAAAGGAAAAGGAATATTGATTC 583
Query 380 CTTCTGAGAAGCTTCAACTCTGGAATGAGCTCAAAATTTTGAGTTTCACGAGAATGGTCT 439
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 584 CTTCTGAGAAGCTTCATCTCTGGAATGAGCTCAAAATTTTGAGTTTCACGAGGATGGTTT 643
Query 440 TGTCCCTTTGGTCGGTCACTATGCTTAGTTTGTACATTAGGGTTCAAGTCAATATTTTGG 499
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGTCTCTTTGGTCTGTCACTATGCTTAGTTTGTACATTAGGGTTCAAGTCAATATTTTGG 703
Query 500 GCAGACATTTATATATCGACACTGCTAGAGGTCTTGGGAGCTCCCATTTACTTGACGAAC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 704 GCAGACATTTATATATCGACACTGCTAGAGGTCTTGGGAGCTCCCATTTACTTGAAGAAC 763
Query 560 TAGATCTCATAGAGAGAGATGATGAACAAAAGTTTTTGACAAGCGCTGATTTTCTTGCGA 619
||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 764 TAGATCTCATAGATAGAGATGACGAACAAAAGTTTTTGGCAAGCGCTGATTTTCTTGCGA 823
Query 620 CCAGTGGCATGCCGAGTTTGATTTCTAACATGCAGAACGCAGTGAAAGAAGTTCTCAAGG 679
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 824 CCAGTGGCATGCCGAGTTTGATTTCTAATATGCAGGGTGCAGTGAAAGAAGTTCTAAAGG 883
Query 680 GAAAGCAGTTAAAGGATGTGTTAACCACAAGTGCTCTTCGAGAAACTGTGATGCGGATTC 739
|||||||||| ||||||||||| |||||||| | ||||| ||||||||||||||||||||
Sbjct 884 GAAAGCAGTTGAAGGATGTGTTTACCACAAGGGTTCTTCAAGAAACTGTGATGCGGATTC 943
Query 740 TCGATGTGTTTATGAGCACAGGAAGTCCACACCACTGGGTAGATTATCTAATGATGTCCC 799
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 944 TCGATGTGTTTATGAGCACTGGAAGTCCACATCACTGGGTAGATTATCTAATGATGTCCC 1003
Query 800 AAGACGCAACCACTGATGTTTCCTCTTCTGATGCAACTGTTACCAAGTTTCATCTACTCA 859
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1004 AAGATGCAACCATTGATGTTTCCTCTTCTGATGCAACTGTTACCAAGTTTCATCAACTCA 1063
Query 860 TAACCGAGACACGGGAAGTACTCACAAGCAATGATTTTTCAAATGTAGCAGAGATCTCAC 919
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1064 TAACCGAGACACGGGAAGTAGTCACAAGCAATGATTTTACAAATGTAGCAGAGATCTCAC 1123
Query 920 TCAAGTGTTGTGCCGTTGCGTTAGTAGAGGAGATGGAAACGCAGACCGGTCTGGCCACAG 979
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1124 TCAAGTGTTGTGCCGTTGCGTTAGTAGAGGAGATGGAAACACAGACCGCTTTGGCCACAG 1183
Query 980 GGATGCAATTGGCAAAGCTATTACCACAGATTGAGAAAACCATGCCGGAGATTTCAGCTG 1039
|| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1184 GGCTGCAATTGGCGAAGCTATTACCACAGATTGAGAAGACCATGCCAGAGATTTCAGCTG 1243
Query 1040 AGCCGGAG-AAGAACCGGTTCTTGCAACTCATCCGAGATTTGCCTGAAGTTAAACTCTTT 1098
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AACCA-AGCAAGAACCGGTTCTTGCAACTCATCCGAGATTTGCCTGAAGTTAAACTCTTT 1302
Query 1099 TTTACTCTTTTATACGCAAATATGCCTCAGTAGCAT--T-ATTAAACCCC-ATTGCCAAA 1154
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 1303 TTTACTCTTTTATACGCAAATATGCCTCAGTAGCATCATTATTAAACCCCCATTGCCAAA 1362
Query 1155 AATTGTTTCCTGATCACTTTTTATCATATGTTT-CGATTTACTTCAAAATAGTAAAACCA 1213
|||||| || |||||||||||| | ||||| | ||||||||||||||||||||| ||
Sbjct 1363 --TTGTTTGCTCATCACTTTTTATTTTGTGTTTTCAATTTACTTCAAAATAGTAAAATCA 1420
Query 1214 AACATCTCTAGAATAA 1229
||||||||||||||||
Sbjct 1421 AACATCTCTAGAATAA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5