BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18165.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479309 jgi|Araly1|479309|fgenesh2_kg.3__2010__AT3G18165.1 1493 0.0
> Ahg479309 jgi|Araly1|479309|fgenesh2_kg.3__2010__AT3G18165.1
Length=1035
Score = 1493 bits (808), Expect = 0.0
Identities = 963/1037 (93%), Gaps = 14/1037 (1%)
Strand=Plus/Plus
Query 18 TCACTATCTGGACACTTTCGATTTCTGAAGTTGAGAGACGACTATGGCGACGAACAATGG 77
||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1 TCACTCTCTGGGTACTTTCGATTTCTGAAGTCGAGAGACGATTATGGCGACGAACAATGG 60
Query 78 TGATGTCTTGATGTTGGAGGCGACGCCGGAGGCTGCGAGGCCCTGGGCTAGTGCGGCGAA 137
|| || |||||| |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 GGACGTTTTGATGCTGGAGGCGGCGCCGGAGGCTGCGAGGCCATGGGCTAGTGCGGCGAA 120
Query 138 TGCAGAAGTTATCGATGCGCTTCCTTATATAGACGACGACTATGGCAATCCATTGATTAA 197
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TGCAGAAGTTATCGATGCGCTTCCTTATATCGACGACGACTATGGCAATCCATTGATTAA 180
Query 198 GTCGGAGGTAGACCGTTTGGTGGAGGAAGAGATGCGTCGGAGCTCTAAGAAGCCAGCTGA 257
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCGGAGGTCGACCGCTTGGTGGAGGAAGAGATGCGTCGGAGCTCTAAGAAGCCAGCTGA 240
Query 258 CTTTCTAAAGGACTTGCCTCCTCTTCCGAAGTTCGATTTTAAGAACTGCCCTGTTCTTGG 317
|||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 241 CTTTCTCAAGGACTTGCCTCCTCTTCCGAAGTTCGATTTCGAGAACTGCCCAGTTCTTGG 300
Query 318 CAAAGAGTATGAGCGTGTTAGAGCTGGGAAGCCTCCTGTGCGGATAGATTTCGAATCCCG 377
||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 301 CAAAGAGTATGAGCGTGTTCGAGCTGGGAAGCCTCCAGTGCGGATAGATTTTGAATCCCG 360
Query 378 ATACAAACTTGAAATGCCACCTGCCAATAAGAGGAATGATGATGCTGCCTGGAAGCAGTA 437
|||||| |||||| |||| ||||| |||||||| ||||||| ||||||||||||||||||
Sbjct 361 ATACAAGCTTGAATTGCCGCCTGCTAATAAGAGTAATGATGCTGCTGCCTGGAAGCAGTA 420
Query 438 TCTTCAGAAGAATCAACGGTCATTGCAACAGAAGCTGATTGAGCTTGAGAATTTGGAATT 497
||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 421 TCTTCAGAAGAATCAGCGGTCATTGCAACAGAAGATGATCGAGCTTGAGAATTTGGAATT 480
Query 498 GATGTCAAAACTTGGCCCCGAGCTTTGGAGACAGAACAACCATCGCCTTGAAGTATTTTT 557
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 481 GATGTCAAAACTTGGCCCCGAGCTTTGGAGACAGAACAACCATCGGCTCGAAGTATTCTT 540
Query 558 GACCAGAATGCAAAGACTAGCACAGGAGCAGAATGAGGAAATTGAAAAAGTAAATCGGGA 617
||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 541 GACAAGAATGCAAAGACTGGCGCAGGAGCAGAACAAGGAAATTGAAAAAGTAAATCGGGA 600
Query 618 AAGGAAGTATCATCAGCAAACCACATCATACGAGCTCAATGCTCTATCTCAAGAATGGAG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGAAGTATCATCAGCAAACCACATCATACGAGCTCAATGCTCTATCTCAAGAATGGAG 660
Query 678 ACAGCTCTGTGTTAAGAATATGGAGATTCAGTCTGCTTGTGCCATGCTTGAGACACAGAT 737
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAGCTCTGCGTGAAGAATATGGAGATTCAGTCTGCTTGTGCCATGCTTGAGACACAGAT 720
Query 738 CGATTCGTTCAAGAAAGAAGCTGCTGAAAGGGGTTGGAACTTAGAAGAGAAACTAGAGAA 797
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GGATTCGTTCAAAAAAGAAGCTGCTGAAAGGGGATGGAACTTAGAAGAGAAACTAGAGAA 780
Query 798 CGTCGAGCCACTTCAAATGCAATGAGGCGCCTCCCTTGCTCTTAAGTAACA-TAGGTTCA 856
||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||
Sbjct 781 GGTCGAGCCACTTCAAATGCAATGAGGCGCCTCCCTTGCTCTTACGTAA-AGTGGGTTCA 839
Query 857 GAGCAAAACAACTGTTGGTCAGTTTGGTTTGAGTTGTGGGTTAAGAGAATCAAAGACGAG 916
|| | |||| ||||||| ||||||||||||||||||| | ||| |||||||||||||||
Sbjct 840 GACCCGAACAGCTGTTGGCCAGTTTGGTTTGAGTTGTGCGCTAA-AGAATCAAAGACGAG 898
Query 917 A--CAGTTTCAGTTATTTGCCAGTTTTGTGAAATCCTCTGCTCTCCTGTCAAGTGGTGTG 974
| |||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||
Sbjct 899 AGACAGTTTCAGTTATTTGGCAGTTTTGTGAAATCATCTGCTTTCCTGTCTAGTGGTGTG 958
Query 975 TGGGACAAGTAATTGCTTTTGAAAGTATCGAAA---C-----TCTTTAATTTATCGA-GC 1025
||||||||||||||| ||||||||||||||||| | |||||||||||| | ||
Sbjct 959 TGGGACAAGTAATTGTTTTTGAAAGTATCGAAAGTTCGAAACTCTTTAATTTATTAAAGC 1018
Query 1026 ATAACGTTTACGATTTG 1042
|||||||||||||||||
Sbjct 1019 ATAACGTTTACGATTTG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5