BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18170.1
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341951 jgi|Araly1|341951|fgenesh1_pg.C_scaffold_3001714 1805 0.0
Ahg479312 jgi|Araly1|479312|fgenesh2_kg.3__2013__AT3G18180.1 1066 0.0
> Ahg341951 jgi|Araly1|341951|fgenesh1_pg.C_scaffold_3001714
Length=1617
Score = 1805 bits (977), Expect = 0.0
Identities = 1119/1188 (94%), Gaps = 8/1188 (1%)
Strand=Plus/Plus
Query 23 TTTCAGATGAAAATAAATTGGAGAAAACTATGAAACCTATATGCACCAAGCTAGCAAGAA 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTTCAGATGAAAATAAATTGGAGAAAACTATGAAACCTATATGCACCAAGCTAGCAAGAA 493
Query 83 CAGAGTTCTGTGAATTAAACGGCGACGTAAGAGTCCACGGTAAGTCCGCGACTGTTTCT- 141
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 494 CAGAGTTCTGTGAATTAAGCGGCGACGTAAGAATCCACGGTAAGTCCGCGACTGTTT-TA 552
Query 142 GCTGCGATCACGTTTGCGTTTTC-GGGAAATTCCACGTGGCATATAAGACCTTACGCGCG 200
||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 553 GCTGCGATCACGTTTGCGTTTTCAGGG-AATTCCACGTGGCATATGAGACCTTACGCGCG 611
Query 201 AAAAGGTGACAC-GGTGGCAATGAAGCGCGTGAGAGAATGGACGGTGAAATTGGAACAAA 259
|||||||||| | |||||| ||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 612 AAAAGGTGAC-CTGGTGGCGATGAATCGCGTGAGAAAATGGACCGTGAAATTGGAACAAA 670
Query 260 ACGCTGACCAATTAGAAAACGCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ACGCTGACCAATTAGAAAACGCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGG 730
Query 320 CGATGATTTTCTCTCTCGGAGGCTACTCGATGAACAATTTCCACGATTTCACCGATATAG 379
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 731 CGATGATTTTCTCTCTCGGAGGCTACACGATGAACAATTTCCACGATTTCACCGATATCG 790
Query 380 TGATTCCTCTGTACACGACGGCGCGTCGATTCAACGGAGAAGTACAGTTTCTCGTGACGA 439
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 791 TGATTCCTCTGTACACGACGGCGCGTCGATTCAACGGCGAAGTTCAGTTTCTCGTGACGA 850
Query 440 ACAAGAGTCCATCGTGGATCAACAAATTTAAGGAATTAGTGAGGAAACTCTCTAATTACG 499
||| || ||||| ||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 851 ACAGGAATCCATGGTGGATCAACAAATTTAAGGAATTAGTGAAGAAACTATCGAATTACG 910
Query 500 AAGTGATTTACATCGACGAAGAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AAGTGATTTACATCGACGAAGAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTC 970
Query 560 TCACTCGCCACCGTGAGTATTTCAAAGAGTTGACGATCGATCCTTCGAATTCGGAGTATT 619
||| |||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 971 TCATTCGCCACCGTGAGTATTTCACTGAGTTGACTATCGATCCTTCAAATTCGGAATATT 1030
Query 620 CAATGTCCGATTTCCGGAGTTTTCTAAGAGACACCTACTCGTTGAGAAACGACGCCGTGG 679
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 1031 CAATGTCCGATTTCCGGAGTTTTCTAAGAGACACCTACTCATTGAGAAACGCCGCGGTGA 1090
Query 680 CTACGAGACAGATCCGGCGGCGGAGGCCACGGATTCTGATTTTGGCTAG-AGGCAGATCG 738
|||||| |||||||||||||||||||||||||| ||||||||| | || || |||||||
Sbjct 1091 TTACGAGCCAGATCCGGCGGCGGAGGCCACGGATCCTGATTTTGTCGAGGAG-CAGATCG 1149
Query 739 CGAGCGTTCGTAAACACCGGCGAAATCGCGAGAGCGGCGAGACAGATCGGATTCAAAGTC 798
|||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1150 CGAGCGTTCGAAAACGCCGGCGAAATCGCGAGAGCGGCGAGACAGATCGGGTTCGAAGTC 1209
Query 799 GTGGTGGCGGAAGCGAACATCGGAATCGCGAAATTCGCGCAAACGGTGAATTCCTGCGAC 858
||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||||||||||
Sbjct 1210 GTGGTGGCGGAAGCGAACACCGGAGTCGCGAATTTCGCACAAACCGTGAATTCCTGCGAC 1269
Query 859 GTGATGCTCGGCGTTCACGGCGCGGGGCTGACGAACATGGTGTTCTTGCCGGAGAACGCG 918
||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1270 GTGATACTCGGCGTTCACGGCGCGGGGCTGACGAACATGGTGTTTTTGCCAGACAACGCG 1329
Query 919 GTGGTGATTCAGGTTCTTCCGATCGGTGGATTCGAGTGGCTTGCGAAAACGGATTTTGAG 978
|| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1330 GTCGTGATTCAGATTCTTCCGATCGGTGGATTCGAGTGGCTTGCGAAGACGGATTTTGAG 1389
Query 979 AAACCTTCGGAGGGAATGAATCTGAGGTACTTGGAGTACAAGATCGCGGTGGAGGAGAGC 1038
| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 1390 AGACCTTCGGAGGGAATGAATCTGAGGTATTTGGAGTATAAGATCGCGGCGGAGGAGAGT 1449
Query 1039 ACGCTGGTGAAGAAGTACGGACGCGACCACGAAATCGTGAGAGATCCATCGGCGGTTGCA 1098
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1450 ACGCTGGTGAAGAAGTACGGACGCGACCACGAGGTCGTGAGAGATCCATCGGCGGTTGCC 1509
Query 1099 AAACACGGGTGGGAAATGTTCAAATCGGTTTATTTGGTACAACAGAACGTGAGTATTGAT 1158
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1510 AAACACGGGTGGGATATGTTCAAGTCGGTTTATTTGGTACAACAGAACGTTAGTATTGAT 1569
Query 1159 ATAAACCGGTTCAAGCCGGTTCTTGTCAAAGCTCTTGAGTTATTGTAG 1206
|||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1570 ATAAACCGGTTCAAACCGGTTCTTGTCAAAGCTCTTGAGTTACTGTAG 1617
> Ahg479312 jgi|Araly1|479312|fgenesh2_kg.3__2013__AT3G18180.1
Length=1395
Score = 1066 bits (577), Expect = 0.0
Identities = 814/929 (88%), Gaps = 14/929 (2%)
Strand=Plus/Plus
Query 275 AAAACGCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGGCGATGATTTTCTCTC 334
||||||||| ||| || |||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 461 AAAACGCTAGTTTATCACGTTGCGTTAAGAATCACAGCGTTCCGGCGATTCTTTTCTCCC 520
Query 335 TCGGAGGCTACTCGATGAACAATTTCCACGATTTCACCGATATAGTGATTCCTCTGTACA 394
||||||||| |||| ||||||||||||| |||||||| || || ||||||||||||||||
Sbjct 521 TCGGAGGCTTCTCGTTGAACAATTTCCATGATTTCACGGACATCGTGATTCCTCTGTACA 580
Query 395 CGACGGCGCGTCGATTCAACGGAGAAGTACAGTTTCTCGTGACGAACAAGAGTCCATCGT 454
||||||||||| ||||| |||| ||||| || || |||||||||||||||| ||||| ||
Sbjct 581 CGACGGCGCGTAGATTCGACGGTGAAGTTCAATTCCTCGTGACGAACAAGAATCCATGGT 640
Query 455 GGATCAACAAATTTAAGGAATTAGTGAGGAAACTCTCTAATTACGAAGTGATTTACATCG 514
|||||| ||||||||||| ||||||||||||| | || ||||| ||||||||||||||||
Sbjct 641 GGATCAGCAAATTTAAGGGATTAGTGAGGAAATTTTCGAATTATGAAGTGATTTACATCG 700
Query 515 ACGAAGAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTCTCACTCGCCACCGTG 574
|||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 701 ACGAAGAAGACGAAACGCATTGTTTCGGCAGCGTCATTGTCGGTCTCAATCGCCACCGTG 760
Query 575 AGTATTTCAAAGAGTTGACGATCGATCCTTCGAATTCGGAGTATTCAATGTCCGATTTCC 634
| ||| |||||| | |||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 761 ATTATGACAAAGAACTAACGATCGATCTTTCGAATTCGGAGTGTTCCATGTCCGATTTCC 820
Query 635 GGAGTTTTCTAAGAGACACCTACTCGTTGAGAAACGACGCCGTGGCTACGAGACAGATCC 694
||| | ||| |||||| | |||||||||||||||| |||||| | | | || | |
Sbjct 821 GGAAATATCTCAGAGACGCATACTCGTTGAGAAACGCCGCCGT-G-T-C--TAC-G-T-- 871
Query 695 GGCGGCGGAGGCCACGGATTCTGATTTTGGCTA-GAGGCAGATCGCGAGCGTTCGTAAAC 753
|||||||||||||| |||| |||||| | | || ||| |||||||||||| || |||
Sbjct 872 ---GGCGGAGGCCACGGCTTCTAATTTTGTCGAGGA-GCATATCGCGAGCGTTTGTGAAC 927
Query 754 ACCGGCGAAATCGCGAGAGCGGCGAGACAGATCGGATTCAAAGTCGTGGTGGCGGAAGCG 813
| | |||||||| ||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 928 GCTGATGAAATCGCTAGAGCGGCGAGACAGATGGGATTCAATGTCGTGGTGGTGGAAGCA 987
Query 814 AACATCGGAATCGCGAAATTCGCGCAAACGGTGAATTCCTGCGACGTGATGCTCGGCGTT 873
|||| || ||| |||| ||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 988 AACACCGAAATTGCGAGTTTCGCACAAACTGTGAATTCCTGTGACGTGATGCTTGGCGTT 1047
Query 874 CACGGCGCGGGGCTGACGAACATGGTGTTCTTGCCGGAGAACGCGGTGGTGATTCAGGTT 933
||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||| ||
Sbjct 1048 CACGGCGCGGGACTGACGAACATGGTGTTCTTACCAGAGAACGCGGTCGTGATTCAGATT 1107
Query 934 CTTCCGATCGGTGGATTCGAGTGGCTTGCGAAAACGGATTTTGAGAAACCTTCGGAGGGA 993
|||||||||||||||||||||||||||||||| |||||||| ||| | || ||| |||||
Sbjct 1108 CTTCCGATCGGTGGATTCGAGTGGCTTGCGAACACGGATTTCGAGGATCCGTCGAAGGGA 1167
Query 994 ATGAATCTGAGGTACTTGGAGTACAAGATCGCGGTGGAGGAGAGCACGCTGGTGAAGAAG 1053
|||||||||||||| |||||||| |||||||||| ||||||||| ||||||| |||| ||
Sbjct 1168 ATGAATCTGAGGTATTTGGAGTATAAGATCGCGGCGGAGGAGAGTACGCTGGCGAAGCAG 1227
Query 1054 TACGGACGCGACCACGAAATCGTGAGAGATCCATCGGCGGTTGCAAAACACGGGTGGGAA 1113
|||||||| || ||||| ||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 1228 TACGGACGTGATCACGAGATCGTTAGAGATCCATCGGCGGTTGCAAAACGCGGGTGGGGA 1287
Query 1114 ATGTTCAAATCGGTTTATTTGGTACAACAGAACGTGAGTATTGATATAAACCGGTTCAAG 1173
| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1288 ACGTTCAAGTCGGTTTATTTGGTACAGCAGAACGTGAGCGTTGATATAAACCGGTTCAAG 1347
Query 1174 CCGGTTCTTGTCAAAGCTCTTGAGTTATT 1202
|||||||||||||||||||||||||||||
Sbjct 1348 CCGGTTCTTGTCAAAGCTCTTGAGTTATT 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49407300432
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5