BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18180.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479312 jgi|Araly1|479312|fgenesh2_kg.3__2013__AT3G18180.1 1421 0.0
Ahg341951 jgi|Araly1|341951|fgenesh1_pg.C_scaffold_3001714 1177 0.0
> Ahg479312 jgi|Araly1|479312|fgenesh2_kg.3__2013__AT3G18180.1
Length=1395
Score = 1421 bits (769), Expect = 0.0
Identities = 930/1008 (92%), Gaps = 10/1008 (1%)
Strand=Plus/Plus
Query 411 ACCTTATGCGAGAAAAGACCAAGTTCCTGCCATGAAACGCGTGAGAGAATGGACGGTGAA 470
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 393 ACCTTATGCGAGAAAAGACCAAGGTGCGGCCATGAAACGCGTGAGAGAATGGACGGTGAA 452
Query 471 ATTAGTACAAAACGCTAGTTTATCACGCTGCGTTAGGAATCACAGCGTTCCGGCGATTCT 530
|||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 453 ATTAATACAAAACGCTAGTTTATCACGTTGCGTTAAGAATCACAGCGTTCCGGCGATTCT 512
Query 531 TTTCTCTCTCGGAGGCTTCTCGTTGAACAATTTCCATGATTTCACGGACATCGTGATTCC 590
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TTTCTCCCTCGGAGGCTTCTCGTTGAACAATTTCCATGATTTCACGGACATCGTGATTCC 572
Query 591 TCTGTACACGACGGCGCGTAGATTC-AGCGGTGAAGTTCAGTTCCTCGTGACGAACAAGA 649
||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 573 TCTGTACACGACGGCGCGTAGATTCGA-CGGTGAAGTTCAATTCCTCGTGACGAACAAGA 631
Query 650 ATCTTTTGTGGATCAACAAATTTAAGGAATTAGTGAGGAAACTCTCTAATTACGAAGTGA 709
||| | |||||||| ||||||||||| ||||||||||||| | || ||||| |||||||
Sbjct 632 ATCCATGGTGGATCAGCAAATTTAAGGGATTAGTGAGGAAATTTTCGAATTATGAAGTGA 691
Query 710 TTTACATCGACGAAGAAGACGAAACGCATTGTTTCAGCAGCGTCATCGTTGGTCTCAATC 769
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 692 TTTACATCGACGAAGAAGACGAAACGCATTGTTTCGGCAGCGTCATTGTCGGTCTCAATC 751
Query 770 GCCACCGTGATTATGACAAAGAGCTAACGA-CTGATCCTTCGAATTCGGAGTATTCAATG 828
|||||||||||||||||||||| ||||||| | |||| |||||||||||||| ||| |||
Sbjct 752 GCCACCGTGATTATGACAAAGAACTAACGATC-GATCTTTCGAATTCGGAGTGTTCCATG 810
Query 829 TCCGATTTCCGGAAAT-TCCTCAGAGACACATACTCATTGAGAAACTCCGCCGTGACTAC 887
|||||||||||||||| || |||||||| ||||||| ||||||||| |||||||| ||||
Sbjct 811 TCCGATTTCCGGAAATATC-TCAGAGACGCATACTCGTTGAGAAACGCCGCCGTGTCTAC 869
Query 888 GAGGCGGAAGCCACGGATTCTGATTTTGTCTAGGAGCAGATCGCGAGCGTTTGTGAACGC 947
| |||||| ||||||| |||| |||||||| ||||||| |||||||||||||||||||||
Sbjct 870 GTGGCGGAGGCCACGGCTTCTAATTTTGTCGAGGAGCATATCGCGAGCGTTTGTGAACGC 929
Query 948 GGGTGAAATCGCTAGAGCGGCGAGACAAATCGGATTTAAAGTCGTGGTGGCGGAAGCAAA 1007
| |||||||||||||||||||||||| || ||||| || |||||||||| |||||||||
Sbjct 930 TGATGAAATCGCTAGAGCGGCGAGACAGATGGGATTCAATGTCGTGGTGGTGGAAGCAAA 989
Query 1008 CACGGAAATCGCGAGTTTCGCA-ATAACTGTGAACTCCTGTGACGTGATGCTCGGCGTTC 1066
||| ||||| |||||||||||| | ||||||||| ||||||||||||||||| |||||||
Sbjct 990 CACCGAAATTGCGAGTTTCGCACA-AACTGTGAATTCCTGTGACGTGATGCTTGGCGTTC 1048
Query 1067 ACGGCGCGGGGA-TGACGAACATGGTGTTCTTACCTGATAACGCGATCGTGATTCAGATT 1125
|||||||||| | |||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 1049 ACGGCGCGGG-ACTGACGAACATGGTGTTCTTACCAGAGAACGCGGTCGTGATTCAGATT 1107
Query 1126 CTTCCGATCGGTGGATTCGAGTGGCTTGCAAAGATGGATTTCGAGTATCCGTCGAAGGGC 1185
||||||||||||||||||||||||||||| || | |||||||||| |||||||||||||
Sbjct 1108 CTTCCGATCGGTGGATTCGAGTGGCTTGCGAACACGGATTTCGAGGATCCGTCGAAGGGA 1167
Query 1186 ATGAATCTGAGGTATTTGGAGTACAAGATCACGGCGGAGGAGAGCACACTGGTGAAGCAG 1245
||||||||||||||||||||||| |||||| ||||||||||||| || |||| |||||||
Sbjct 1168 ATGAATCTGAGGTATTTGGAGTATAAGATCGCGGCGGAGGAGAGTACGCTGGCGAAGCAG 1227
Query 1246 TACGGACGCGATCACGAGTTCGTTAGAGATCCATTGGCCGTTGCAAAACGCGGGTGGGGA 1305
|||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1228 TACGGACGTGATCACGAGATCGTTAGAGATCCATCGGCGGTTGCAAAACGCGGGTGGGGA 1287
Query 1306 ACTTTCAAGTCGGTTTATTTGGTACAGCAGAACGTTAGCGTTGATATAAACCGGTTCAAG 1365
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1288 ACGTTCAAGTCGGTTTATTTGGTACAGCAGAACGTGAGCGTTGATATAAACCGGTTCAAG 1347
Query 1366 CTGGTTCTTGTCAAAGCTCTTGAGCTATTGCATAATCAGTCAGTGTAA 1413
| |||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1348 CCGGTTCTTGTCAAAGCTCTTGAGTTATTACATAATCAGTCGGTGTAA 1395
Score = 241 bits (130), Expect = 1e-62
Identities = 148/157 (94%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAGAAGGATATTCTTTACGATACAGTACTTGCTCGTAGTTTTAGCAAAACTGAT 60
||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 1 ATGACAAAGAAGGATCTTCTTTACGATTCAATACTTGCTCGTAGCTTTAGCAAAACTGAT 60
Query 61 CAGAAGAGACTTTGCTGTGGAGCTTTCATTGCCTCTCTTCTCTTGGTCCTCACTCTTTGC 120
|||| ||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 61 CAGATGAGACTTGGCTTTGGAGCTTTCATTGCCTCTCTTCTCTTTGTCTTCACTCTTTGC 120
Query 121 ACTGTCGTTAAACCTTATCTCAGCCCTTTACCAATCG 157
|||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTGTCGTTAAACCTTATCTCAGCCCTTTACCAATCG 157
Score = 207 bits (112), Expect = 1e-52
Identities = 119/122 (98%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 214 ACTACCAACACTACAATCTCCAAAGAAGAAGTTATTTCAGAGTGCAATAAAATGGAGAAA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 ACTACCAACACTACAATCTCCAAAGAAGAAGTTATTTCAGAGTGCAATAAAATGGAGAAA 312
Query 274 CCTATCTGTCACTGTAACACA-CTAGGAAGCAAAGAGTTTTGCGATGTAAGCGGCGACGT 332
||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 313 CCTATCTGTCACTGTAACA-AGCTAGGAAGCAAAGAGTTTTGCGATCTAAGCGGCGACGT 371
Query 333 AA 334
||
Sbjct 372 AA 373
> Ahg341951 jgi|Araly1|341951|fgenesh1_pg.C_scaffold_3001714
Length=1617
Score = 1177 bits (637), Expect = 0.0
Identities = 1039/1224 (85%), Gaps = 63/1224 (5%)
Strand=Plus/Plus
Query 214 ACTACCAACACTACAATCTCCAAAGAAGAAGTTATTTCAGAGTG-CAATAAAATGGAGAA 272
|||||||||||||||||| |||| ||||||||||||||||| || |||||| |||||||
Sbjct 400 ACTACCAACACTACAATCCCCAAGGAAGAAGTTATTTCAGA-TGAAAATAAATTGGAGAA 458
Query 273 ACCTATCTGTCA-CTGTA-ACA-C-A-CTAGGAAGCAA-AGAGTTTTGCG-ATGTAAGCG 325
| ||| || | || || || | | |||| ||| || |||||| || | || ||||||
Sbjct 459 AACTA--TGAAACCTATATGCACCAAGCTAGCAAG-AACAGAGTTCTGTGAAT-TAAGCG 514
Query 326 GCGACGTAAGAATCCATGGTAAATCCGCAACTGTTCTT-GCGGCGGTCACGTTTGCGTTT 384
|||||||||||||||| ||||| ||||| |||||| || || ||| ||||||||||||||
Sbjct 515 GCGACGTAAGAATCCACGGTAAGTCCGCGACTGTT-TTAGCTGCGATCACGTTTGCGTTT 573
Query 385 TCCGGGAATTCCACGTGGTATATGAGACCTTATGCGAGAAAA---GACCAAGTTCCTGCC 441
|| ||||||||||||||| ||||||||||||| ||| ||||| |||| | | ||
Sbjct 574 TCAGGGAATTCCACGTGGCATATGAGACCTTACGCGCGAAAAGGTGACC-TGGT--GGCG 630
Query 442 ATGAAACGCGTGAGAGAATGGACGGTGAAATT--------A-G-T-A-C------AAAAC 483
||||| ||||||||| ||||||| |||||||| | | | | | |||||
Sbjct 631 ATGAATCGCGTGAGAAAATGGACCGTGAAATTGGAACAAAACGCTGACCAATTAGAAAAC 690
Query 484 GCTAGTTTATCACGCTGCGTTAGGAATCACAGCGTTCCGGCGATTCTTTTCTCTCTCGGA 543
|||| ||| || || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 691 GCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGGCGATGATTTTCTCTCTCGGA 750
Query 544 GGCTTCTCGTTGAACAATTTCCATGATTTCACGGACATCGTGATTCCTCTGTACACGACG 603
|||| | || ||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 751 GGCTACACGATGAACAATTTCCACGATTTCACCGATATCGTGATTCCTCTGTACACGACG 810
Query 604 GCGCGTAGATTCAGCGGTGAAGTTCAGTTCCTCGTGACGAACAAGAATCTTTTGTGGATC 663
|||||| |||||| ||| ||||||||||| ||||||||||||| ||||| | |||||||
Sbjct 811 GCGCGTCGATTCAACGGCGAAGTTCAGTTTCTCGTGACGAACAGGAATCCATGGTGGATC 870
Query 664 AACAAATTTAAGGAATTAGTGAGGAAACTCTCTAATTACGAAGTGATTTACATCGACGAA 723
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 871 AACAAATTTAAGGAATTAGTGAAGAAACTATCGAATTACGAAGTGATTTACATCGACGAA 930
Query 724 GAAGACGAAACGCATTGTTTCAGCAGCGTCATCGTTGGTCTCAATCGCCACCGTGATTAT 783
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||
Sbjct 931 GAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTCTCATTCGCCACCGTGAGTAT 990
Query 784 GACAAAGAGCTAACGACT-GATCCTTCGAATTCGGAGTATTCAATGTCCGATTTCCGGAA 842
|| ||| | || | | |||||||| |||||||| ||||||||||||||||||||||
Sbjct 991 TTCACTGAGTTGACTA-TCGATCCTTCAAATTCGGAATATTCAATGTCCGATTTCCGGAG 1049
Query 843 ATTCCTCAGAGACACATACTCATTGAGAAACTCCGCCGTG---ACTA--C-GA------G 890
|| || |||||||| ||||||||||||||| |||| ||| || | | || |
Sbjct 1050 TTTTCTAAGAGACACCTACTCATTGAGAAACGCCGCGGTGATTACGAGCCAGATCCGGCG 1109
Query 891 GCGGAAGCCACGGATTCTGATTTTGTCTAGGAGCAGATCGCGAGCGTTTGTGAACGCGGG 950
||||| ||||||||| ||||||||||| |||||||||||||||||||| | ||||| ||
Sbjct 1110 GCGGAGGCCACGGATCCTGATTTTGTCGAGGAGCAGATCGCGAGCGTTCGAAAACGCCGG 1169
Query 951 TGAAATCGCTAGAGCGGCGAGACAAATCGGATTTAAAGTCGTGGTGGCGGAAGCAAACA- 1009
|||||||| |||||||||||||| ||||| || ||||||||||||||||||| ||||
Sbjct 1170 CGAAATCGCGAGAGCGGCGAGACAGATCGGGTTCGAAGTCGTGGTGGCGGAAGCGAACAC 1229
Query 1010 CGGAAATCGCGAGTTTCGCA-ATAACTGTGAACTCCTGTGACGTGATGCTCGGCGTTCAC 1068
||| | |||||| ||||||| | ||| ||||| ||||| |||||||| ||||||||||||
Sbjct 1230 CGG-AGTCGCGAATTTCGCACA-AACCGTGAATTCCTGCGACGTGATACTCGGCGTTCAC 1287
Query 1069 GGCGCGGGGATGACGAACATGGTGTTCTTACCTGATAACGCGATCGTGATTCAGATTCTT 1128
||||||||| |||||||||||||||| || || || |||||| |||||||||||||||||
Sbjct 1288 GGCGCGGGGCTGACGAACATGGTGTTTTTGCCAGACAACGCGGTCGTGATTCAGATTCTT 1347
Query 1129 CCGATCGGTGGATTCGAGTGGCTTGCAAAGATGGATTTCGAGT-ATCCGTCGAAGGGCAT 1187
|||||||||||||||||||||||||| |||| |||||| ||| | || ||| |||| ||
Sbjct 1348 CCGATCGGTGGATTCGAGTGGCTTGCGAAGACGGATTTTGAGAGA-CCTTCGGAGGGAAT 1406
Query 1188 GAATCTGAGGTATTTGGAGTACAAGATCACGGCGGAGGAGAGCACACTGGTGAAGCAGTA 1247
||||||||||||||||||||| |||||| ||||||||||||| || ||||||||| ||||
Sbjct 1407 GAATCTGAGGTATTTGGAGTATAAGATCGCGGCGGAGGAGAGTACGCTGGTGAAGAAGTA 1466
Query 1248 CGGACGCGATCACGAGTTCGTTAGAGATCCATTGGCCGTTGCAAAACGCGGGTGGGGA-A 1306
||||||||| |||||| |||| |||||||||| ||| ||||| |||| |||||||| | |
Sbjct 1467 CGGACGCGACCACGAGGTCGTGAGAGATCCATCGGCGGTTGCCAAACACGGGTGGG-ATA 1525
Query 1307 CT-TTCAAGTCGGTTTATTTGGTACAGCAGAACGTTAGCGTTGATATAAACCGGTTCAAG 1365
| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1526 -TGTTCAAGTCGGTTTATTTGGTACAACAGAACGTTAGTATTGATATAAACCGGTTCAAA 1584
Query 1366 CTGGTTCTTGTCAAAGCTCTTGAG 1389
| ||||||||||||||||||||||
Sbjct 1585 CCGGTTCTTGTCAAAGCTCTTGAG 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5