BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18190.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929690 jgi|Araly1|929690|scaffold_302147.1 2660 0.0
> Ahg929690 jgi|Araly1|929690|scaffold_302147.1
Length=1654
Score = 2660 bits (1440), Expect = 0.0
Identities = 1584/1655 (96%), Gaps = 3/1655 (0%)
Strand=Plus/Plus
Query 79 CTCTCTCACTCGTAGT-aaaaaaaTGGCGGCGGTAGCGGCACCAATGGCTTCGAAGCCCC 137
|||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1 CTCTCTCACTCGTAGTAAAAAAAATGGCGGCGGTAGCAGCACCGATGGCTTCGAAGCCTC 60
Query 138 GTGGATCTAAAGCTGAATCGTTCGTAGACAACAAGCGGAGAGAAGATATCCGATTCGCGA 197
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGATCTAAAGCAGAATCGTTCGTAGACAACAAGCGGAGAGAAGATATCCGATTCGCGA 120
Query 198 ACATCAACTCTGCTCGAGCAGTCTCTGACGCCGTCCGTACTAGTTTGGGACCGAAAGGAA 257
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||
Sbjct 121 ACATCAACTCTGCTCGCGCCGTCTCTGACGCCGTTCGTACGAGTTTGGGACCGAAAGGAA 180
Query 258 TGGACAAGATGATTTCCACGGCGAACGGAGAGGTAATCATTACTAACGATGGAGCTACGA 317
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 181 TGGACAAGATGATTTCCACGGCGAACGGCGAGGTAATCATCACTAACGATGGAGCTACAA 240
Query 318 TCCTTAACAAGATGGAGGTTTTGCAGCCAGCGGCGAAGATGTTAGTCGAGCTTTCCAAAT 377
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCTCAACAAGATGGAGGTTTTGCAGCCAGCGGCGAAGATGTTAGTCGAGCTTTCCAAAT 300
Query 378 CTCAAGATTCAGCCGCCGGAGATGGTACCACAACTGTCGTAGTAATCGCCGGTGCGCTTC 437
||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||
Sbjct 301 CTCAAGATTCAGCCGCCGGAGATGGGACTACAACCGTCGTAGTCATCGCCGGTGCGCTTC 360
Query 438 TCAAGGAGTGTCAATCGCTTCTCACAAACGGGATCCACCCTACTGTCATTTCAGATTCGC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAAGGAGTGTCAATCGCTTCTCACAAACGGGATCCACCCTACTGTCATTTCAGATTCGC 420
Query 498 TTCACAAGGCGTGTGGTAAGGCGATCGATATTTTGACTGCCATGGCT-GTTCCAGTGGAG 556
|||||||||| |||| ||||||||| ||||| ||||| ||||||||| | ||| ||||||
Sbjct 421 TTCACAAGGCTTGTGCTAAGGCGATAGATATCTTGACGGCCATGGCTAG-TCCGGTGGAG 479
Query 557 CTCACTGATAGAGATTCACTTGTGAAATCTGCGAGCACATCGCTTAACAGTAAGGTTGTT 616
|||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 480 CTCACTGACCGAGATTCACTTGTTAAATCTGCGAGCACGTCGCTTAACAGTAAGGTTGTT 539
Query 617 AGTCAGTACTCTACATTGCTTGCTCCTTTAGCTGTAGATGCGGTTCTCTCTGTTATAGAT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTCAGTACTCTACATTGCTTGCTCCTTTAGCTGTAGATGCGGTTCTCTCTGTTATAGAT 599
Query 677 CCGGAAAAGCCTGAGATTGTGGATTTGCGTGATATTAAGATTGTTAAGAAGCTTGGTGGG 736
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCGGAAAAGCCAGAGATTGTGGATTTGCGTGATATTAAGATTGTTAAGAAGCTTGGTGGG 659
Query 737 ACTGTGGATGATACACATACTGTGAAAGGTTTGGTTTTTGATAAGAAGGTTAGCCGTGCT 796
|||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||
Sbjct 660 ACTGTGGATGATACACATCCGGTGAAAGGTTTGGTTTTTGACAAGAAGGTTAGTCGTGCT 719
Query 797 GCTGGTGGACCGACTCGTGTGGAGAATGCTAAGATTGCTGTGATTCAGTTCCAGATCTCA 856
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 GCTGGTGGACCGACTCGTGTGGAGAATGCTAAGATCGCTGTGATTCAGTTCCAGATCTCA 779
Query 857 CCTCCTAAGACTGATATCGAGCAGAGTATTGTTGTCTCTGATTATACTCAGATGGATAGG 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCTCCTAAGACTGATATCGAGCAGAGTATTGTTGTCTCTGATTATACTCAGATGGATAGG 839
Query 917 ATCTTGAAAGAAGAGAGGAATTACATATTGGGGATGATTAAGAAGATCAAAGCAACTGGT 976
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 ATCTTGAAAGAAGAGAGGAATTACATCTTGGGGATGATTAAGAAGATCAAAGCAACTGGT 899
Query 977 TGCAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCAGTGACTGATCTATCTCTT 1036
|| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 900 TGTAATGTGTTGTTGATCCAGAAGAGTATTTTGAGGGATGCTGTTACTGATCTATCTCTT 959
Query 1037 CACTATTTGGCCAAAGCTAAGATTATGGTTATTAAGGATGTTGAGAGAGATGAGATTGAA 1096
||||||||||| |||||||| || |||||||| |||||||| ||||||||||||||||||
Sbjct 960 CACTATTTGGCTAAAGCTAAAATCATGGTTATCAAGGATGTAGAGAGAGATGAGATTGAA 1019
Query 1097 TTTGTCACCAAGACATTGAACTGCTTGCCTATCGCCAATATTGAGCATTTCAGAGCTGAG 1156
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 TTCGTCACCAAGACATTGAACTGCTTGCCAATCGCCAATATTGAGCATTTCAGAGCTGAG 1079
Query 1157 AAGCTTGGCCATGCTGATCTTGTTGAGGAGGCCTCCCTTGGAGATGGAAAGATTTTGAAG 1216
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 AAGCTTGGCCATGCTGATCTTGTTGAGGAAGCCTCCCTTGGAGATGGAAAGATTTTGAAG 1139
Query 1217 ATCACTGGTATCAAGGACATGGGGAGAACTACATCTGTTCTAGTTCGTGGCTCCAACCAG 1276
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1140 ATCACTGGAATCAAGGACATGGGGAGAACTACTTCTGTTCTTGTTCGTGGCTCCAACCAG 1199
Query 1277 CTTGTTCTAGATGAAGCTGAAAGGAGTTTACATGATGCCTTGTGTGTGGTTAGGTGTCTA 1336
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 CTTGTTCTAGATGAAGCTGAAAGGAGTTTACATGATGCCTTATGTGTGGTTAGGTGTCTG 1259
Query 1337 GTGAGCAAAAGGTTTTTGATTGCAGGAGGTGGTGCACCAGAGATTGAGCTCTCAAGGCAG 1396
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1260 GTGAGCAAGAGGTTCTTGATTGCAGGAGGTGGTGCACCAGAGATTGAGCTCTCTAGACAG 1319
Query 1397 CTCGGTGCTTGGGCTAAGGTGCTACATGGGATGGAAGGTTACTGTGTGAAGTCTTTTGCT 1456
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1320 CTCGGTACTTGGGCTAAGGTTCTACATGGGATGGAAGGTTACTGTGTGAAGTCTTTCGCT 1379
Query 1457 GAAGCTCTCGAAGTTATTCCTTACACACTAGCCGAGAATGCAGGGTTAAACCCTATCGCC 1516
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1380 GAAGCCCTCGAGGTTATTCCTTACACACTGGCCGAGAATGCAGGGTTAAACCCTATCGCC 1439
Query 1517 ATTGTGACTGAACTCAGGAACAAGCATGCTCAAGGGGAAATCAACGCAGGGATCAATGTG 1576
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1440 ATTGTGACTGAACTCAGGAACAAGCATGCTCAAGGGGAAATCCATGCAGGGATCAATGTG 1499
Query 1577 AGGAAAGGACAGATCACTAACATCTTGGAGGAAAATGTTGTTCAGCCTCTGCTTGTGAGT 1636
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1500 AGGAAAGGACAGATCACTAACATATTGGAGGAAAATGTTGTTCAGCCCCTGCTTGTGAGT 1559
Query 1637 ACCAGTGCGATCACTTTAGCAACTGAATGCGTTAGGATGATTTTGAAGATTGATGACATC 1696
||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1560 ACCAGCGCGATCACTCTAGCAACTGAATGCGTAAGGATGATTTTGAAGATTGATGACATC 1619
Query 1697 GTAACTGTGAGGTAGTGTGGTAGTTTCTTTCAAAA 1731
|| ||||||||||||||||||||||||||||||||
Sbjct 1620 GTTACTGTGAGGTAGTGTGGTAGTTTCTTTCAAAA 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5