BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18200.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479315 jgi|Araly1|479315|fgenesh2_kg.3__2016__AT3G18200.1 2041 0.0
> Ahg479315 jgi|Araly1|479315|fgenesh2_kg.3__2016__AT3G18200.1
Length=1309
Score = 2041 bits (1105), Expect = 0.0
Identities = 1247/1314 (95%), Gaps = 16/1314 (1%)
Strand=Plus/Plus
Query 16 aagaagaaaaagagaaaatggggaaaggagtagtatcagagaaggtgaagCTCGTGGTGG 75
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAGAAGAAGAAGAGACAATGGGGAAAGGAGTAGTATCAGAGAAGGTGAAGCTTGTGGTGG 60
Query 76 CATTGATCACACTTCAGTTTTGTTTCGCAGGCTTCCACATTGTCTCAAGAGTTGCTCTTA 135
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTGATCACACTTCAGTTCTGTTTCGCAGGCTTCCACATTGTCTCAAGAGTTGCTCTTA 120
Query 136 ACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATAGGAATCTCCTTGCCCTTCTCCTCA 195
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATCGGAATCTCCTTGCCCTTCTCCTCA 180
Query 196 TAGGTCCCTTCGCTTACTTCTTCGaaaaaaaaGAAAGACCTCCACTTACAATCTCTTTAC 255
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 181 TAGGTCCCTTCGCTTACTTCTTCGAAAAAAAGGAAAGACCTCCACTCACAATCTCTTTAC 240
Query 256 TGGCTCAGTTCTTCTTCTTGGCACTCATAGGCATCACAGCGAACCAAGGATTCTACCTAT 315
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 241 TGGCGCAGTTCTTCTTCTTGGCACTCATAGGAATCACAGCGAACCAAGGATTTTACCTAT 300
Query 316 TAGGACTTTACTATGCAACTCCAACTTTTGCTTCCGCAATGCAGAACTCTGTTCCTGCCA 375
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGACTTTACTATGCAACTCCAACGTTTGCTTCCGCAATGCAGAACTCTGTTCCTGCCA 360
Query 376 TCACTTTCATCATGGCTTGTGC-CTTAAGGCTAGAGCACATAGACCTGGTCAGGAAACAT 434
|||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||
Sbjct 361 TCACTTTCATCATGGCTTGTACAC-TAAGGTTAGAGCACATAGACCTGGTCAGGAAACAT 419
Query 435 GGTGTGGCAAAAGTATTGGGAACTCTTGTGAGCATCGGTGGAGCCACCGTGATCACATTG 494
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGTGGCCAAAGTATTGGGAACTCTTGTGAGCATCGGTGGAGCCACCGTGATCACATTA 479
Query 495 TACAGAGGATTTCCGATATTTGACCAGGGCCTTAACATGCAAAAGGAAGAGGTGGTCGGA 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TACAGAGGATTTCCGATATTTGACCAGGGCCTTAACATGCAAAAGGAAGAGGTGATCGGA 539
Query 555 TCTGAC-AA-C-TCGCACAGCTTGACACTCGGATGGTTATACCTTATGGGACATTGTCTG 611
|||||| || | ||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 540 TCTGACAAATCATCGCACAACTGGAAACTCGGATGGTTATACCTTATGGGACATTGTCTG 599
Query 612 TCATGGGCTGGTTGGATGGTTCTTCAAGCTCCTGTTCTAAAGCAATACCCGGCGAAGCTC 671
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 TCATGGGCTGGTTGGATGGTTCTTCAAGCTCCTGTTCTAAAGCAATACCCGGCAAAGCTC 659
Query 672 ACTTTAACATCCTTCACATGTTTCTTTGGTCTGATTCAGTTTCTGGTTATTGCTCTCTTT 731
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 660 ACTTTAACATCCTTCACATGTTTCTTTGGTCTGATTCAGTTTCTGGTCATTGCTCTGTTT 719
Query 732 GTGGAAACTGATCTAAATAATTGGATCATCGTCTCTTGGGAAGAGCTCTTCACCATCCTA 791
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 720 GTGGAAACTGATCTTAATAACTGGATCATCGTCTCATGGGAAGAGCTCTTCACCATCCTA 779
Query 792 TACGCCGGAATAATAGCGTCAGGGTTGGTGGTTTATCTTCAAACATGGTGTATCTACAAA 851
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 780 TACGCTGGAATAATAGCATCAGGGTTGGTGGTGTATCTTCAAACATGGTGTATTTACAAA 839
Query 852 AGCGGTCCAGTTTTTGTCGCTGTTTTCCAGCCTCTCCAGACACTTCTTGTTGCTGCGATG 911
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 840 AGCGGTCCAGTCTTTGTCGCTGTCTTCCAGCCTCTCCAGACACTTCTTGTTGCTGCAATG 899
Query 912 GCGTTTCTTATTCTTGGTGATCAGTTATACTCGGGAGGGATTGTTGGTGCAGTGTTTATA 971
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 900 GCGTTTCTTATTCTTGGTGATCAGTTATACTCCGGAAGGATTGTTGGTGCAGTGTTCATA 959
Query 972 ATGCTAGGGCTCTACTTAGTTCTTTGGGGCAAAAACGAAGAAAGAAAACTGGCTCTTGAA 1031
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 960 ATGCTAGGGCTCTACTTAGTTCTTTGGGGGAAAAACGAAGAAAGAAAACTGGTTCTTGAA 1019
Query 1032 GAGAGTCAACAAGATCCAGAGTCACTGACCAAACATCTACTTGAGGCACAACACAAGAAG 1091
|| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1020 GAAAGTCAACAAGATCCAGAGTCATTGACCAAAAATCTACTTGAGGCACAACACCAGAAG 1079
Query 1092 AGTAATTCTGAATCTGAAGTGTAAAAGT-------GCTGCAAACACAACGCATTACTTCT 1144
|||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1080 AGTATTTCTGAATCTGAAGTGTAAAAGTTTACACTGCTGCAAACATAACGCATTACTGCT 1139
Query 1145 CTGTACATACACATACAAGAACTTGGCCAACACACAGGCTCCTCAAGTGGGTCTCTCATA 1204
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 CTGTACATACACA--CAAGAACTTGTCCAACACACAGGCTCCTCAAGTGGGTCTCTCATA 1197
Query 1205 CAATTGATATCCTAGTCGTTTACTTTTGAGTTGTAATCAAAATTGGGTTGCAATTTATTT 1264
||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 CAACTGATATTCTAGTCGTTTACTTTGGAGTTGTAATCAAAATTGGGTTGCAATTTATTT 1257
Query 1265 ATGAATAAAAATGAAAAGATGGTAACATTAAATCAAAGTTGACAATAGAGAAGC 1318
||||||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1258 ATGAATAAA--TGAAAAGATGATAACATTAAATCAAAGTTGACAATAGAAAAGC 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5