BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18200.1 Length=1318 Score E Sequences producing significant alignments: (Bits) Value Ahg479315 jgi|Araly1|479315|fgenesh2_kg.3__2016__AT3G18200.1 2041 0.0 > Ahg479315 jgi|Araly1|479315|fgenesh2_kg.3__2016__AT3G18200.1 Length=1309 Score = 2041 bits (1105), Expect = 0.0 Identities = 1247/1314 (95%), Gaps = 16/1314 (1%) Strand=Plus/Plus Query 16 aagaagaaaaagagaaaatggggaaaggagtagtatcagagaaggtgaagCTCGTGGTGG 75 |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 AAGAAGAAGAAGAGACAATGGGGAAAGGAGTAGTATCAGAGAAGGTGAAGCTTGTGGTGG 60 Query 76 CATTGATCACACTTCAGTTTTGTTTCGCAGGCTTCCACATTGTCTCAAGAGTTGCTCTTA 135 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 CATTGATCACACTTCAGTTCTGTTTCGCAGGCTTCCACATTGTCTCAAGAGTTGCTCTTA 120 Query 136 ACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATAGGAATCTCCTTGCCCTTCTCCTCA 195 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 ACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATCGGAATCTCCTTGCCCTTCTCCTCA 180 Query 196 TAGGTCCCTTCGCTTACTTCTTCGaaaaaaaaGAAAGACCTCCACTTACAATCTCTTTAC 255 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 181 TAGGTCCCTTCGCTTACTTCTTCGAAAAAAAGGAAAGACCTCCACTCACAATCTCTTTAC 240 Query 256 TGGCTCAGTTCTTCTTCTTGGCACTCATAGGCATCACAGCGAACCAAGGATTCTACCTAT 315 |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 241 TGGCGCAGTTCTTCTTCTTGGCACTCATAGGAATCACAGCGAACCAAGGATTTTACCTAT 300 Query 316 TAGGACTTTACTATGCAACTCCAACTTTTGCTTCCGCAATGCAGAACTCTGTTCCTGCCA 375 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 301 TGGGACTTTACTATGCAACTCCAACGTTTGCTTCCGCAATGCAGAACTCTGTTCCTGCCA 360 Query 376 TCACTTTCATCATGGCTTGTGC-CTTAAGGCTAGAGCACATAGACCTGGTCAGGAAACAT 434 |||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||| Sbjct 361 TCACTTTCATCATGGCTTGTACAC-TAAGGTTAGAGCACATAGACCTGGTCAGGAAACAT 419 Query 435 GGTGTGGCAAAAGTATTGGGAACTCTTGTGAGCATCGGTGGAGCCACCGTGATCACATTG 494 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGTGTGGCCAAAGTATTGGGAACTCTTGTGAGCATCGGTGGAGCCACCGTGATCACATTA 479 Query 495 TACAGAGGATTTCCGATATTTGACCAGGGCCTTAACATGCAAAAGGAAGAGGTGGTCGGA 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 480 TACAGAGGATTTCCGATATTTGACCAGGGCCTTAACATGCAAAAGGAAGAGGTGATCGGA 539 Query 555 TCTGAC-AA-C-TCGCACAGCTTGACACTCGGATGGTTATACCTTATGGGACATTGTCTG 611 |||||| || | ||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 540 TCTGACAAATCATCGCACAACTGGAAACTCGGATGGTTATACCTTATGGGACATTGTCTG 599 Query 612 TCATGGGCTGGTTGGATGGTTCTTCAAGCTCCTGTTCTAAAGCAATACCCGGCGAAGCTC 671 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 600 TCATGGGCTGGTTGGATGGTTCTTCAAGCTCCTGTTCTAAAGCAATACCCGGCAAAGCTC 659 Query 672 ACTTTAACATCCTTCACATGTTTCTTTGGTCTGATTCAGTTTCTGGTTATTGCTCTCTTT 731 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 660 ACTTTAACATCCTTCACATGTTTCTTTGGTCTGATTCAGTTTCTGGTCATTGCTCTGTTT 719 Query 732 GTGGAAACTGATCTAAATAATTGGATCATCGTCTCTTGGGAAGAGCTCTTCACCATCCTA 791 |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 720 GTGGAAACTGATCTTAATAACTGGATCATCGTCTCATGGGAAGAGCTCTTCACCATCCTA 779 Query 792 TACGCCGGAATAATAGCGTCAGGGTTGGTGGTTTATCTTCAAACATGGTGTATCTACAAA 851 ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| Sbjct 780 TACGCTGGAATAATAGCATCAGGGTTGGTGGTGTATCTTCAAACATGGTGTATTTACAAA 839 Query 852 AGCGGTCCAGTTTTTGTCGCTGTTTTCCAGCCTCTCCAGACACTTCTTGTTGCTGCGATG 911 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 840 AGCGGTCCAGTCTTTGTCGCTGTCTTCCAGCCTCTCCAGACACTTCTTGTTGCTGCAATG 899 Query 912 GCGTTTCTTATTCTTGGTGATCAGTTATACTCGGGAGGGATTGTTGGTGCAGTGTTTATA 971 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| Sbjct 900 GCGTTTCTTATTCTTGGTGATCAGTTATACTCCGGAAGGATTGTTGGTGCAGTGTTCATA 959 Query 972 ATGCTAGGGCTCTACTTAGTTCTTTGGGGCAAAAACGAAGAAAGAAAACTGGCTCTTGAA 1031 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 960 ATGCTAGGGCTCTACTTAGTTCTTTGGGGGAAAAACGAAGAAAGAAAACTGGTTCTTGAA 1019 Query 1032 GAGAGTCAACAAGATCCAGAGTCACTGACCAAACATCTACTTGAGGCACAACACAAGAAG 1091 || ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 1020 GAAAGTCAACAAGATCCAGAGTCATTGACCAAAAATCTACTTGAGGCACAACACCAGAAG 1079 Query 1092 AGTAATTCTGAATCTGAAGTGTAAAAGT-------GCTGCAAACACAACGCATTACTTCT 1144 |||| ||||||||||||||||||||||| |||||||||| ||||||||||| || Sbjct 1080 AGTATTTCTGAATCTGAAGTGTAAAAGTTTACACTGCTGCAAACATAACGCATTACTGCT 1139 Query 1145 CTGTACATACACATACAAGAACTTGGCCAACACACAGGCTCCTCAAGTGGGTCTCTCATA 1204 ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1140 CTGTACATACACA--CAAGAACTTGTCCAACACACAGGCTCCTCAAGTGGGTCTCTCATA 1197 Query 1205 CAATTGATATCCTAGTCGTTTACTTTTGAGTTGTAATCAAAATTGGGTTGCAATTTATTT 1264 ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1198 CAACTGATATTCTAGTCGTTTACTTTGGAGTTGTAATCAAAATTGGGTTGCAATTTATTT 1257 Query 1265 ATGAATAAAAATGAAAAGATGGTAACATTAAATCAAAGTTGACAATAGAGAAGC 1318 ||||||||| |||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1258 ATGAATAAA--TGAAAAGATGATAACATTAAATCAAAGTTGACAATAGAAAAGC 1309 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49292931681 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5