BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18210.1
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479316 jgi|Araly1|479316|fgenesh2_kg.3__2017__AT3G18210.1 2632 0.0
Ahg913909 jgi|Araly1|913909|Al_scaffold_0001_4163 91.6 2e-17
> Ahg479316 jgi|Araly1|479316|fgenesh2_kg.3__2017__AT3G18210.1
Length=1709
Score = 2632 bits (1425), Expect = 0.0
Identities = 1626/1719 (95%), Gaps = 29/1719 (2%)
Strand=Plus/Plus
Query 27 aaaaaaaTCTTCGAGGGAACATTCAGAAACCCTAACTTCAACGGGAACTCAAAAATCAGA 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAATCTTCGAGGGAACATTCAGAAACCCTAACTTCAACGGGAACTCAAAAATCAGA 60
Query 87 ATCTCCAGATCGAGAGCTTAAAAAGTCGATTTCAATTCCCCTTTAAGA---T---TTTTT 140
|||||||||||||||||| |||||| ||||||||||| | |||||||| | |||||
Sbjct 61 ATCTCCAGATCGAGAGCTAAAAAAGCCGATTTCAATT-CTCTTTAAGATTCTGGGTTTTT 119
Query 141 GCTTTTGGAATGTAGTGTGAAGAAGAAACCCTAGTTTTTTCTCACTTGAATTCTCT-GCC 199
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 120 GCTTTTGGAATGTAGTGTGAAGAAGAAACCCTAG-TTTTTCTCACTTGAATTCTCTAG-C 177
Query 200 TTCTTTAGTAATGTCAAGTGAGCAGCGAGAAGGTTCGCAAGAGACGACGACGACGACGGT 259
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 TTCTACAGTAATGTCAAGTGAGCAGCGAGAAGGTTCGCAGGAGACGACGACGACGACGGT 237
Query 260 GGAAGGTAACGGAACAATTGCAGGTCAGAATTCTCATTCGGCGGCTCCCACGACATTGAG 319
|||||||||||||||||||| |||| | ||||||||||||| || | | ||||||||||
Sbjct 238 GGAAGGTAACGGAACAATTGGAGGTAACAATTCTCATTCGGTGGTTGCTGCGACATTGAG 297
Query 320 AGCTACCTCTACGATGGTTTCTTGCCAGAGACTAAGGCTAAACCCTAACAACGAGCATAG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGCTACCTCTACGATGGTTTCTTGCCAGAGACTAAGGCTAAACCCTAACAACGAGCATAG 357
Query 380 ACCCGATAGTTATGAAGATCTGCAGCTTGATTTCCCAAACTCGGTATATTCTAGTCTGGA 439
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 ACCCGATAGTTACGAAGATCTGCAGCTTGATTTCCCAAACTCGGTATATTCTAGTCTCGA 417
Query 440 GAAGTACTTGCCTCCGAATATGCTCGTCTCGAATCGTGATGAGAAAATCAAATTCATGAC 499
|||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 418 GAAGTACTTGCCTCCGAATATGCTGGTCTCCAATCGCGATGAGAAAATCAAGTTCATGAC 477
Query 500 TGATATTATGCTTAGGCATCTTCCTCATGGAGAGCGTTCCAGAGCTCAAAGGCACAGTGA 559
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 478 TGACATTATGCTTAGGCATCTTCCTCATGGAGAGCGTTCTAGAGCGCAAAGGCACAGGGA 537
Query 560 CTATAGGCTGAAGATTACAACAAATTATCAGCCACTTCACAAGGAGTTGTATACTCTAGT 619
|||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 CTATAGGCAGAAGATTATATCAAATTATCAGCCACTTCACAGGGAGTTGTATACTCTAGT 597
Query 620 TCCCACAGTATGTTTCGTTCCTGCTTTCCTTAAGGCGATAAATGAAAACACAGAGGAAAG 679
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 598 TCCCACAGTATGTTTCGTTCCCGCTTTCCTTAAGGCGATAAATGAAAGCACAGAGGAAAG 657
Query 680 CTTCAGAAATATAATATCTGAACCGTCTCCTGGTGTTTTCGTCTTTGACATGCTCCAGCC 739
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTTCAGAAACATAATATCTGAACCGTCTCCTGGTGTTTTCGTCTTTGACATGCTCCAGCC 717
Query 740 TAGCTTTTGTGAGATGATGCTAGCCGAGATAGACAATTTTGAAAGGTGGGTGGGTGAGAC 799
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 TAGCTTTTGCGAGATGATGCTATCCGAGATAGACAATTTTGAAAGGTGGGTGGGTGAGAC 777
Query 800 CAAATTCCGGATAATGAGACCAAACACCATGAATAAATACGGTGCTGTGCTTGACGACTT 859
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 778 CAAATTCCGGATAATGAGACCAAACACCATGAATAAATACGGCGCTGTGCTTGACGACTT 837
Query 860 TGGTCTAGACACCATGCTTGACAAACTCATGGAGGGGTTTATACGTCCCATCTCTAAAGT 919
|||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 838 TGGTCTGGATACCATGCTTGACAAACTCATGGAGGGTTTTATACGTCCCATTTCTAAAGT 897
Query 920 ATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATA 979
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 898 ATTCTTCAGTGATGTGGGTGGAGCATCTCTGGACTCTCACCATGGTTTTGTTGTTGAATA 957
Query 980 TGGGAAAGATAGGGATGTTGATTTAGGCTTTCATGTGGATGATTCAGAAGTAACGCTGAA 1039
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGGTAAAGATAGGGATGTTGATTTAGGCTTTCATGTGGATGATTCAGAAGTAACGCTGAA 1017
Query 1040 TGTTTGTTTGGGTAATCAATTTGTGGGAGGGGAGCTATTTTTCAGAGGCACACGGTGTGA 1099
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1018 TGTTTGTTTGGGTAATCAATTTGTGGGAGGGGAGCTATTTTTCAGAGGTACACGGTGTGA 1077
Query 1100 AAAACATGTGAACACAGCAACAAAGGCAGATGAAACATATGATTATTG-TCATATACCTG 1158
||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||
Sbjct 1078 AAAACATGTGAACACAGCAACAAAGGCAGATGAAATATTTGATTAT-GATCATATACCTG 1136
Query 1159 GACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCACAACATGCGGGC 1218
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1137 GACAAGCTGTGCTTCACCGTGGGCGCCACCGCCATGGTGCCAGAGCCACAACATCCGGGC 1196
Query 1219 ATCGGGTCAATATGCTTCTATGGTGCAGAAGTTCTGTATTTAGAGAGCTCAAAACTCATC 1278
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 ATCGGGTCAATATGCTACTATGGTGCAGAAGTTCTGTGTTTAGAGAGCTCAAAACTCATC 1256
Query 1279 ACAAGGATTTCTCCAGCTGGTGTGGAGAGTGCTTTTGTGAAAAGAGAGATGAGAAAGTGC 1338
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAAGGAATTCTCCAGCTGGTGTGGAGAGTGCTTTTGTGAAAAGAGAGATGAGAAAGTGC 1316
Query 1339 GGTCGATTGATGCTCTAAGAAAGAAATTGTTTAAACCACGTCAAACCCAAGCTTGATGGA 1398
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1317 GGTCGATTGATGCTCTAAGAAAGAAATTGTTTAAAGCACGTCAAACCCAAGCTTGATGGA 1376
Query 1399 ACACTAGCAAGATGAGCAATTGATGAAACATTAGTAAGATAAGCAATAACATATATTGGA 1458
||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1377 ACACTAGTAAGATGAGCAATGGATGAAACACTAGTAAGATAAGCAATAACATATATTGGA 1436
Query 1459 TGACATTAAAACTTGAGATCAAGCCCTGAAGAATTGCTCCTGTTTTAAGCTGACTTAAAA 1518
|||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1437 TGACTTTAAAAGTTGAGATCAAGCTCTGAAGAATTGCTCTTGTTTTAAGCTGACTTAAAA 1496
Query 1519 CTGAGCCTATGTAGAAATCATTTGAGTTATATGGGTCTCTGTTTATCGTTTCTCAGACTC 1578
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 1497 CTGAGCCTATGTAGAAATCATTTGAGGTATATGGGTCTCTGTTTATCTTTTCTCTGACTC 1556
Query 1579 TTTGATAAAAT-ATGTACATGAAAGAATCTAGTCTCAACTTCACTTGTGTACTACAAGGA 1637
||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 1557 TTTGATAAAATTATGTACATGAAA---TCTAGTCTCAACTTCACTTGTAT--TACAAGGA 1611
Query 1638 GTCATATTGTTGTCCGAttttt-ttt----GTT----CTTTCATATGAGTACAAGGAAGA 1688
||||||||||| |||||||||| ||| ||| ||||| |||||||||||||||||
Sbjct 1612 GTCATATTGTTATCCGATTTTTGTTTTTTTGTTTATTCTTTCTTATGAGTACAAGGAAGA 1671
Query 1689 ATTGGTGTTATCTAATTGGATTTGGTGA-TGCTGCTCTC 1726
||||||||||||||||||||| |||||| | ||||||||
Sbjct 1672 ATTGGTGTTATCTAATTGGATGTGGTGACT-CTGCTCTC 1709
> Ahg913909 jgi|Araly1|913909|Al_scaffold_0001_4163
Length=1098
Score = 91.6 bits (49), Expect = 2e-17
Identities = 123/158 (78%), Gaps = 7/158 (4%)
Strand=Plus/Plus
Query 1148 TCATATACCTGGACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCAC 1207
||||| || || |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 855 TCATACACAAGGTCAAGCTATACTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCAC 914
Query 1208 A--AC-ATGCGGGC-ATCGGGTCAATATGCTTCTATGGTGCAGAAGTTCTGTATTTAGAG 1263
|| || | | |||||| ||||||| |||| | || |||| ||| | |||||||
Sbjct 915 CGCACCAT-CTTGTTATCGGGCCAATATGATTCTTTTCTGTAGAAACTCTTTGTTTAGAG 973
Query 1264 AGCTCAAAACTCATCACAAGGATTTCTCCAGC-TGGTG 1300
|| | ||||| || | ||||| ||| |||| |||||
Sbjct 974 AGATGGAAACTTATAAGAAGGAATTC-CCAGAGTGGTG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64829596990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5