BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18215.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929695 jgi|Araly1|929695|scaffold_302152.1 1199 0.0
> Ahg929695 jgi|Araly1|929695|scaffold_302152.1
Length=775
Score = 1199 bits (649), Expect = 0.0
Identities = 731/772 (95%), Gaps = 0/772 (0%)
Strand=Plus/Plus
Query 102 TCTGCGGCGAAGTAGAAATGTGGACGGAGGAATCTTTGGATTTAGTGCTTGTGCCGACGG 161
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 4 TCTGCGGCGAAGTAGAGATGTGGAAGGAGGAATCTTTGGATTTAGTGCTTGTGCCGGCGG 63
Query 162 GTCTGGTCGTGATGGTTGCTTACCATGTCTGGCTCGTCTACGCTATTCTTCACCGCCCCA 221
|||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 64 GTCTCGTCGTGATGGTAGCTTACCATGTCTGGCTCGTCTACGCTATCCTCCACCGTCCCA 123
Query 222 AGCTCACTGTTATCGCTCTCAACGCTGAGTCTCGACGACAATGGGTCTTCTCTATGATGA 281
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 124 AGCTCACTGTTATCTCTCTCAACGCTGAATCTCGACGACAATGGGTTTTCTCTATGATGA 183
Query 282 CTGAACCACTGAAAAATGGTACCTTGGCTGTTCAGACAATCCGGAACAACATAATGGCAT 341
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CTGAGCCACTGAAAAATGGTACCTTGGCTGTTCAGACAATCCGGAACAACATAATGGCAT 243
Query 342 CAACCCTTTTAGCCACAACAGCAATCACTTTATGTTCCATCATCGGCGTCTTTGTAAGCA 401
| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 244 CTACACTTTTAGCCACAACAGCAATCACTCTATGTTCCATCATCGGCGTCTTTGTAAGCA 303
Query 402 ACTCGTCATCTTCAAAATCCACGGCAACAAATCTCATATACGGGAGCAAAAGCCCTCGCT 461
|||||||| ||||||||||||| | |||| |||||||||||||| |||||| |||||||
Sbjct 304 ACTCGTCAGCTTCAAAATCCACCCCGACAAGTCTCATATACGGGAACAAAAGTCCTCGCT 363
Query 462 TAGCGTCATTCAAGAACTTTGCAATCCTGATCTGTTTCCTCATGGCCTTTCTCTGCAACA 521
|||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 364 TAGCATCAATCAAGAACTTTGCAATCCTGATCTGCTTCCTCATGGCCTTTCTCTGCAACA 423
Query 522 TCCAGTCAATCAGGTATTACGCTCACGTAAGTTTCCTAGTCACAGTGCCTGTCTCAAGAG 581
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 424 TTCAGTCAATCAGGTACTACGCTCACGTAAGTTTCCTAGTCACTGTGCCTGTCTCGAGAG 483
Query 582 GGAAAAGAGAGCACTGCGAGTACGTGTCTAGAAACCTGAACCGAGCTAGCTACTTCTGGT 641
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 484 GGAAAAGAGAGCACTGCGAGTACGTTTCTAGAAACCTGAACCGAGCTAGCTACTTCTGGT 543
Query 642 CTCTCGGATTACGGGCTTTCTACTTCTCCTTCCCTCTCTTCTTATGGACCTTCGGGCCAA 701
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 544 CTCTCGGATTACGGGCTTTCTACTTCTCATTCCCGCTCTTCCTATGGACCTTCGGGCCAA 603
Query 702 TCCCGATGTTTGTGTGCTGTTGTATGATGTCCTCGATTCTATATTTCTTGGACACGACCA 761
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 604 TCCCGATGTTTGTGTGCTGTTGTATGATGTCCTCCATTCTATATTTCTTGGACACGACCA 663
Query 762 CTAGTTTTACCAGGCATCTTCATAGCCAATCGTTCAGAGAAACGGCTGATTCAATGGACG 821
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 664 CTAGTTTCACCAGGCATCTCCATAGCCAGTCGTTCAGAGAAACGGCTGATTCAATGGACG 723
Query 822 GCGAAATCGAATCAGCTGTTCATACTCTGTAGATTCTTCTCTGACTTTTGTT 873
| |||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 724 GTGAAATCGAATCAGCAGTTCATGCTCTGTAGATTCTTCTCTGATTTTTGTT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5