BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18220.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929696 jgi|Araly1|929696|scaffold_302153.1 1559 0.0
Ahg477497 jgi|Araly1|477497|fgenesh2_kg.3__198__AT3G02600.1 78.7 1e-13
> Ahg929696 jgi|Araly1|929696|scaffold_302153.1
Length=968
Score = 1559 bits (844), Expect = 0.0
Identities = 924/964 (96%), Gaps = 0/964 (0%)
Strand=Plus/Plus
Query 159 ATTTAATGAGCGTGAAAGATGGCTAAGATAATGCTTGGATCTCACTCGGTTAAGAGCCAT 218
||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 ATTTAATGAGCCTGGGAGATGGCTAAGATAATGCTTGGATCTCACTCGGTAAAGAGCCAT 62
Query 219 GGATGGAAGGTGGCTCGTGAACATCTTTGTGACTGGCTCATCCTCGTAGTCCTCGGTCTC 278
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGATGGAAGGTGGCTCGAGAACATCTTTGTGACTGGCTCATCCTCGTAGTCCTCGGTCTG 122
Query 279 ATCGACATTGTACTCAATGTTATCGAGCCTTTTCATCGCTATATTGGACCTGACATGTTA 338
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 123 ATCGACATTGTACTCAATGTTATCGAACCTTTTCATCGCTACATTGGACCAGACATGTTA 182
Query 339 ACCGATCTCACTTTCCCATTTTATGAAGACACCATCCCTATGTGGGCTGTCCCGATTATT 398
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ACCGATCTCACGTTCCCATTTTATGAAGACACCATCCCTATGTGGGCTGTCCCGATTATT 242
Query 399 TGTATATTGGTTCCGATATGCATCTTCATAGTGTACTATTACTATCGAAGAGATGTTTAT 458
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGTATATTGGTTCCTATATGCATCTTCATAGTGTACTATTACTATCGAAGAGATGTTTAT 302
Query 459 GATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACT 362
Query 519 GATTCCATCAAAGACGCGGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCC 578
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 363 GATTCCATCAAAGACGCTGTTGGTAGGCCACGACCTAACTTCTTTTACCGATGTTTTCCC 422
Query 579 AATGGTAAACCGAAATTTCATCCGGATACTAAGGATGTTGTGTGTCATGGAGTTAAAAAG 638
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AATGGCAAACCGAAATTTGATCCGGATACTAAGGATGTTGTGTGTCATGGAGTTAAAAAG 482
Query 639 ATAATCAAAGAAGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGT 698
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 483 ATAATCAAAGAAGGTTACAAGAGTTTCCCTAGTGGTCACACTTCGTGGTCCTTCGCTGGT 542
Query 699 TTAACTTTCCTAGCGTGGTACTTATCGGGTAAAATCAAAGTCTTTGACAGAAGAGGTCAC 758
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 543 TTGACTTTCCTAGCGTGGTACTTATCGGGTAAAATCAAAGTATTTGACAGAAGAGGTCAC 602
Query 759 GTGGCGAAGCTATGCCTCGTGTTCTTACCGATACTCATATCAATTCTCATCGGAATATCA 818
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GTGGCGAAGCTATGCCTTGTGTTCTTACCGATACTCATATCAATTCTCATCGGAATATCA 662
Query 819 CGCGTAGACGACTATTGGCACCATTGGACCGATGTCTTCGCCGGAGCTATCATCGGAATT 878
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 663 CGCGTAGACGACTATTGGCACCATTGGTCCGATGTCTTCGTCGGAGCTATCATCGGAATC 722
Query 879 TTTGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGGATGG 938
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 723 TTAGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCATACCCTTACGACGAAAACGGATGG 782
Query 939 GCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTCGAGCCACGACGATG 998
|| |||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||
Sbjct 783 GCACCACATGCGTATTTCAGAATGTTGGCGGAGAGGAGTACTGGTAGAGCCACGACAATG 842
Query 999 ACTCGAACCGGTTCTCGAGGAATGTTGGGCAACGACGTTGAGCCTGGCAACTCCGCGTCC 1058
||||||||||||||||| || | ||||| ||||||||| |||||||||| |||||| |||
Sbjct 843 ACTCGAACCGGTTCTCGGGGGACGTTGGACAACGACGTCGAGCCTGGCACCTCCGCCTCC 902
Query 1059 TCGCCGCACGATCGCCACCGTGAAAGCACTGATTCTGACTTTTGAAAATTTCCTCCACAA 1118
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 903 TCGCCGCACGATCGCCACCGTGAAAGCACTGATTCTGACTTTTGAAAAGTTCCTCCGCAA 962
Query 1119 TGTT 1122
||||
Sbjct 963 TGTT 966
> Ahg477497 jgi|Araly1|477497|fgenesh2_kg.3__198__AT3G02600.1
Length=1546
Score = 78.7 bits (42), Expect = 1e-13
Identities = 268/371 (72%), Gaps = 39/371 (11%)
Strand=Plus/Plus
Query 421 TCTTCATAGTGTA-CTA-TTACTATCGAAGAGATGTTTATGATCTTCATCACGCCATTCT 478
|||||||| | || ||| || | |||||||||||||||||||||||||||||| | ||
Sbjct 555 TCTTCATA-TTTATCTACTT-CCGTCGAAGAGATGTTTATGATCTTCATCACGCGGTGCT 612
Query 479 CGGTATCGGATTCTCATGT-CTTGTGACTGGAGTCACC-ACTGATTCCATCAAAGAC-GC 535
||| || || ||| ||| || ||||| | ||| || || ||| | || ||||| ||
Sbjct 613 AGGTCTCTTATACTC-TGTTCTGGTGACAGCAGT-ACTTACCGATGCAAT-AAAGAATGC 669
Query 536 GGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCCA-ATGGTAAACCGAAAT 594
|| ||| | ||||| ||| ||||||| | || |||||||| | |||| ||| | |
Sbjct 670 AGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCC-AGATGGCAAAGCTC--T 726
Query 595 TTCATCCGGATA-C-TAAG-GATGTTGTGTGTCATGGAGTTAAAAA-GATAATCAAAG-A 649
|| || | ||| | | | |||||| | || ||||| | ||||| | | || || | |
Sbjct 727 TT-AT--G-ATAGCCTTGGAGATGTTATATGCCATGGTGATAAAAGCG-TCAT-AAGGGA 780
Query 650 AGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGTTTA--ACTTTC 707
||| |||| || ||||| || || ||||| || ||||| || || ||| | | ||||
Sbjct 781 AGGGCACAAAAGCTTCCCAAGCGGACACACCTCTTGGTCTTTTGCGGGTCTGGGA-TTTC 839
Query 708 CTA-GCGTGGTACTTATCGGGTAAA-AT-CAAAGTC-TTTGACAG-AAGAGGTCACGTGG 762
| || || ||||||||||| ||| || ||| | | ||||| | || ||| ||||| |
Sbjct 840 TTTCGC-TG-TACTTATCGGG-AAAGATTCAA-G-CATTTGATGGTAA-AGGCCACGTTG 893
Query 763 CGAAGCTATGC 773
| |||||||||
Sbjct 894 CAAAGCTATGC 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5