BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18220.1 Length=1264 Score E Sequences producing significant alignments: (Bits) Value Ahg929696 jgi|Araly1|929696|scaffold_302153.1 1559 0.0 Ahg477497 jgi|Araly1|477497|fgenesh2_kg.3__198__AT3G02600.1 78.7 1e-13 > Ahg929696 jgi|Araly1|929696|scaffold_302153.1 Length=968 Score = 1559 bits (844), Expect = 0.0 Identities = 924/964 (96%), Gaps = 0/964 (0%) Strand=Plus/Plus Query 159 ATTTAATGAGCGTGAAAGATGGCTAAGATAATGCTTGGATCTCACTCGGTTAAGAGCCAT 218 ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3 ATTTAATGAGCCTGGGAGATGGCTAAGATAATGCTTGGATCTCACTCGGTAAAGAGCCAT 62 Query 219 GGATGGAAGGTGGCTCGTGAACATCTTTGTGACTGGCTCATCCTCGTAGTCCTCGGTCTC 278 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 63 GGATGGAAGGTGGCTCGAGAACATCTTTGTGACTGGCTCATCCTCGTAGTCCTCGGTCTG 122 Query 279 ATCGACATTGTACTCAATGTTATCGAGCCTTTTCATCGCTATATTGGACCTGACATGTTA 338 |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| Sbjct 123 ATCGACATTGTACTCAATGTTATCGAACCTTTTCATCGCTACATTGGACCAGACATGTTA 182 Query 339 ACCGATCTCACTTTCCCATTTTATGAAGACACCATCCCTATGTGGGCTGTCCCGATTATT 398 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 ACCGATCTCACGTTCCCATTTTATGAAGACACCATCCCTATGTGGGCTGTCCCGATTATT 242 Query 399 TGTATATTGGTTCCGATATGCATCTTCATAGTGTACTATTACTATCGAAGAGATGTTTAT 458 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 TGTATATTGGTTCCTATATGCATCTTCATAGTGTACTATTACTATCGAAGAGATGTTTAT 302 Query 459 GATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACT 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACT 362 Query 519 GATTCCATCAAAGACGCGGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCC 578 ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| Sbjct 363 GATTCCATCAAAGACGCTGTTGGTAGGCCACGACCTAACTTCTTTTACCGATGTTTTCCC 422 Query 579 AATGGTAAACCGAAATTTCATCCGGATACTAAGGATGTTGTGTGTCATGGAGTTAAAAAG 638 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AATGGCAAACCGAAATTTGATCCGGATACTAAGGATGTTGTGTGTCATGGAGTTAAAAAG 482 Query 639 ATAATCAAAGAAGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGT 698 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 483 ATAATCAAAGAAGGTTACAAGAGTTTCCCTAGTGGTCACACTTCGTGGTCCTTCGCTGGT 542 Query 699 TTAACTTTCCTAGCGTGGTACTTATCGGGTAAAATCAAAGTCTTTGACAGAAGAGGTCAC 758 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 543 TTGACTTTCCTAGCGTGGTACTTATCGGGTAAAATCAAAGTATTTGACAGAAGAGGTCAC 602 Query 759 GTGGCGAAGCTATGCCTCGTGTTCTTACCGATACTCATATCAATTCTCATCGGAATATCA 818 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 603 GTGGCGAAGCTATGCCTTGTGTTCTTACCGATACTCATATCAATTCTCATCGGAATATCA 662 Query 819 CGCGTAGACGACTATTGGCACCATTGGACCGATGTCTTCGCCGGAGCTATCATCGGAATT 878 ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 663 CGCGTAGACGACTATTGGCACCATTGGTCCGATGTCTTCGTCGGAGCTATCATCGGAATC 722 Query 879 TTTGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGGATGG 938 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 723 TTAGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCATACCCTTACGACGAAAACGGATGG 782 Query 939 GCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTCGAGCCACGACGATG 998 || |||||||||||||| |||||||||||||||||||| |||||| |||||||||| ||| Sbjct 783 GCACCACATGCGTATTTCAGAATGTTGGCGGAGAGGAGTACTGGTAGAGCCACGACAATG 842 Query 999 ACTCGAACCGGTTCTCGAGGAATGTTGGGCAACGACGTTGAGCCTGGCAACTCCGCGTCC 1058 ||||||||||||||||| || | ||||| ||||||||| |||||||||| |||||| ||| Sbjct 843 ACTCGAACCGGTTCTCGGGGGACGTTGGACAACGACGTCGAGCCTGGCACCTCCGCCTCC 902 Query 1059 TCGCCGCACGATCGCCACCGTGAAAGCACTGATTCTGACTTTTGAAAATTTCCTCCACAA 1118 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 903 TCGCCGCACGATCGCCACCGTGAAAGCACTGATTCTGACTTTTGAAAAGTTCCTCCGCAA 962 Query 1119 TGTT 1122 |||| Sbjct 963 TGTT 966 > Ahg477497 jgi|Araly1|477497|fgenesh2_kg.3__198__AT3G02600.1 Length=1546 Score = 78.7 bits (42), Expect = 1e-13 Identities = 268/371 (72%), Gaps = 39/371 (11%) Strand=Plus/Plus Query 421 TCTTCATAGTGTA-CTA-TTACTATCGAAGAGATGTTTATGATCTTCATCACGCCATTCT 478 |||||||| | || ||| || | |||||||||||||||||||||||||||||| | || Sbjct 555 TCTTCATA-TTTATCTACTT-CCGTCGAAGAGATGTTTATGATCTTCATCACGCGGTGCT 612 Query 479 CGGTATCGGATTCTCATGT-CTTGTGACTGGAGTCACC-ACTGATTCCATCAAAGAC-GC 535 ||| || || ||| ||| || ||||| | ||| || || ||| | || ||||| || Sbjct 613 AGGTCTCTTATACTC-TGTTCTGGTGACAGCAGT-ACTTACCGATGCAAT-AAAGAATGC 669 Query 536 GGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCCA-ATGGTAAACCGAAAT 594 || ||| | ||||| ||| ||||||| | || |||||||| | |||| ||| | | Sbjct 670 AGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCC-AGATGGCAAAGCTC--T 726 Query 595 TTCATCCGGATA-C-TAAG-GATGTTGTGTGTCATGGAGTTAAAAA-GATAATCAAAG-A 649 || || | ||| | | | |||||| | || ||||| | ||||| | | || || | | Sbjct 727 TT-AT--G-ATAGCCTTGGAGATGTTATATGCCATGGTGATAAAAGCG-TCAT-AAGGGA 780 Query 650 AGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGTTTA--ACTTTC 707 ||| |||| || ||||| || || ||||| || ||||| || || ||| | | |||| Sbjct 781 AGGGCACAAAAGCTTCCCAAGCGGACACACCTCTTGGTCTTTTGCGGGTCTGGGA-TTTC 839 Query 708 CTA-GCGTGGTACTTATCGGGTAAA-AT-CAAAGTC-TTTGACAG-AAGAGGTCACGTGG 762 | || || ||||||||||| ||| || ||| | | ||||| | || ||| ||||| | Sbjct 840 TTTCGC-TG-TACTTATCGGG-AAAGATTCAA-G-CATTTGATGGTAA-AGGCCACGTTG 893 Query 763 CGAAGCTATGC 773 | ||||||||| Sbjct 894 CAAAGCTATGC 904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47234294163 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5