BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18230.1
Length=2263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341959 jgi|Araly1|341959|fgenesh1_pg.C_scaffold_3001722 1951 0.0
> Ahg341959 jgi|Araly1|341959|fgenesh1_pg.C_scaffold_3001722
Length=2124
Score = 1951 bits (1056), Expect = 0.0
Identities = 1165/1217 (96%), Gaps = 9/1217 (1%)
Strand=Plus/Plus
Query 13 ATGGAGACCCCACTCCCTCCTTTATCGCAACTAACCCCAAATCCTACTCCCGCCGCCGCC 72
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGACCCCACTCCCTTCTTTATCGCAACTAACCCCAAATCCTACTCCCGCCGCCGCC 60
Query 73 GTCTCTTCCGCTATTCCGGCGCCAGTTAAGAGCGTAGCCGTTCAGCAACCGATCGATGGA 132
||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 61 GTCTCTTCCGCTATTCCGGCGGCAGTCAAGAGCGTAGCCGTTCAGCAACCGATTGATGGA 120
Query 133 TCTCCACGCGCCGTTGCTACTGATACCGGAGGT-ATTCCTGAGCCACTTGCGGCTGTTCC 191
|||||||||||||| |||| ||||||||||||| | ||| ||||||||| ||||||||||
Sbjct 121 TCTCCACGCGCCGTCGCTATTGATACCGGAGGTCA-TCCCGAGCCACTTCCGGCTGTTCC 179
Query 192 CGGCGCTAAGCTTCGTCTTATGTGCAGTTTTGGTGGCCACATCATGCCTCGTCCACACGA 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGGCGCTAAGCTTCGTCTTATGTGCAGTTTTGGTGGCCACATCATGCCTCGTCCACACGA 239
Query 252 CAAATCGTTGACGTACTCCGGCGGCGAGACTCGTATTGTGGTTGTTGATCGACGTGCGTC 311
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 240 CAAATCGTTGACGTACTCCGGCGGCGAGACTCGTATGGTCGTTGTTGATCGACGTGCGTC 299
Query 312 ACTGTCTTCGCTCCGATCTCGTCTCTCTAGTATGCTTCTCAACGGCCGGTCCTTTACTCT 371
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 ACTGTCTTCGCTCCGATCTCGTCTCTCTAGTATGCTTCTCAACGGCCGGTCCTTCACTCT 359
Query 372 CAAGTACCAGCTCCCTAGCGAAGATCTCGATTCACTCGTCACCATCACTACCGATGAAGA 431
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAAGTATCAGCTCCCTAGCGAAGATCTCGATTCACTCGTCACCATCACTACCGATGAAGA 419
Query 432 TCTGGAGAACATGATCGAGGAATACGATCGCGCGGCTTCGTCAGCGACGGCGACTGCTAC 491
||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 420 TCTGGAGAATATGATTGAGGAATACGATCGCGCGACTTCTTCAGCGACGGCGACTGCTAC 479
Query 492 GCAACGGCTCCGGTTGTTCCTTTTCGCTAACAAGCTCGAGACCGCCGCTACTATGGGATC 551
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 480 GCAACGGCTCCGGTTGTTTCTTTTCGCTAATAAGCTCGAGACCGCCGCTACGATGGGATC 539
Query 552 TCTGCTTGACGGCACGAAATCTGACACATGGTTCGTCGATGCTCTGAATCAATCTGGTTT 611
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTGCTTGACGGCGCGAAATCCGACACATGGTTCGTCGATGCTCTGAATCAATCTGGTTT 599
Query 612 GCTTCCTCGTGGTTTATCAGATTCCGCCGCCGTGAATAA-TACCTTGGTGAATCTCGACG 670
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 600 GCTTCCTCGTGGTTTATCAGATTCCGCCGCCGTGAATAACT-CCTTGGTGAATCTCGACG 658
Query 671 AAGCTAGCGGCGGAGAGACCGAGATCCAAAACCTTGAAACTAATGTTGGTGGCGAGAACA 730
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 AAGCTAGCGGCGGAGAGACCGAGATCCAAAACCTAGAAACTAATGTTGGTGGCGAGAACA 718
Query 731 ATAAGCGAGGGGATTTGGTTGCTAACGGTGTGATTTCGCATCAGGAGATGCATATGAGCT 790
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATAAGCGAGCGGATTTGGTTGCTAACGGTGTGATTTCGCATCAGGAGATGCATATGAGCT 778
Query 791 CGATGCCTGATTCTCCAATGATGGAAGCCGCTGGTTCTTCGATAGGATCTTCTTCTTCAT 850
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 779 CGATGCCTGATTCGCCAATGATGGAAGCCGCCGGTTCTTCGATAGGATCTTCTTCTTCTT 838
Query 851 CTCCTTCCACATCCAATTTGCCACCGATTCGCGTTAGAGTCAGTGAGGACCAGAGGATAG 910
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 CTCCTTCCACATCCAATTTGCCACCGATTCGCGTTAGAGTCAGTGAAGACCAGAGGATAG 898
Query 911 AGGAACAATTGGCACAGATGACCTTCTCAAACATGCAAACTCAGAGGCAATTTGATGATG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGGAACAATTGGCACAGATGACCTTCTCAAACATGCAAACTCAGAGGCAATTTGATGATG 958
Query 971 GCGTTAGCTTGATGGCAAATCGGCCAATGATGATTCCACCTGGTGCCATGAACGATGCTG 1030
||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 959 GCGTTAGTTTGATGGCAAATCGGCCAATGATGATTCCTTCTGGTGCCATGAATGATGCTG 1018
Query 1031 C-G--ATGGCGTATAACAACGCACCTGGTGATGGTACTGCTCCCGCAAGCAATGGCCATG 1087
| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1019 CTGCGATGGCGTATAACAACGCACCTAGTGATGGTACTGCTGCCGCAAGCAATGGCCAGG 1078
Query 1088 TCTCACCTGAAGACGATCGATCCGAATT-AGGTGTATCAACTGGCTACAGGAAGCCACCT 1146
| ||||| || || ||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 1079 TTTCACCGGACGATGATCGATCCGA-TTCAGGTATATCAACTGGCTACAGGAAGCCACCT 1137
Query 1147 TTGCCGATGCAACCAGTAACGATCCCACCTAGAACTGTTGGAGGCTATGGCTTGACATCC 1206
|||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1138 TTGCCGATGCAACCAGTAGCGATCCCACCTAGAACTATTGGAGGGTATGGCTTGACATCC 1197
Query 1207 CCTGATTCTGTTGCAAG 1223
|||||||| ||||||||
Sbjct 1198 CCTGATTCCGTTGCAAG 1214
Score = 1295 bits (701), Expect = 0.0
Identities = 761/791 (96%), Gaps = 0/791 (0%)
Strand=Plus/Plus
Query 1223 GTGATACTAGCATTTCTTCTGCTACTTCATTTTCAAAGCCGATGTACTACCAAGACCAAC 1282
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1334 GTGATACTAGCATTTCTTCTGCTAATTCATTTTCAAAGCCGATGTACTACCAAGACCAAC 1393
Query 1283 CTCCAGCTCTGCCAAGAGCTCCTCCAGTGGCACAGCCTGAAACCACCTCGGCCCAAAGCT 1342
||||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||
Sbjct 1394 CTCCAGCTCTGCCAAGAGCTCCTCCAGTGACGCAGCCTGAAACCACATCGGTCCAAAGCT 1453
Query 1343 CTCAAGTCTTACCTCAGACTGAAAACACTTCAGCCCAAACCACCTCCCATGTCTTATCTC 1402
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1454 CTCAAGTCTTACCTCAGACTGAAAACACTTCAGCCCAAACCACCTCCCACGTCCTATCTC 1513
Query 1403 AGCCAGGTACGTACACAACTATGGATCAACAACAACAACAACCTCTGGCTCAACAACCTT 1462
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1514 AGCCAGGTACATATACAACTATGGATCAACAACAACACCAACCTCTGGCTCAACAACCTT 1573
Query 1463 TCTTACACCAAGGCGTTCAGTATATCCCTCACCCATCACAATACATACCAATTTACTCTC 1522
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 1574 TCTTACACCAAGGCGTTCAGTATATCCCTCATCCATCACAATACATCCCGGTTTACTCTC 1633
Query 1523 ATCAGCAACAAAACTACCCTGTTTACGTGATGTCCGTCCCACAATCTCAGCAGTATATCC 1582
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1634 ATCAGCAACAAAACTACCCTGTTTACGTGATGTCTGTCCCGCAATCTCAGCAGTATATCC 1693
Query 1583 CAGCAGGAACTCCCCCGCTCTACCCGAACTCAAAACCCGGCACAAACTCGAGACCTGAAG 1642
|||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 1694 CAGCAGGAACTCCCCCACTCTACCCAAACTCAAAACCTGCCACAAACTCGAGACCTGAAG 1753
Query 1643 CTGCCCAGAACGTTTACCGAGCTGCTCCCCCTCAGGTTATTCAGCTTCAGCAACAGCATC 1702
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1754 CTGCCCAGAACGTTTACCGTGCCGCTCCCCCTCAGGTTATTCAGCTTCAGCAACAGCATC 1813
Query 1703 AGTACATGGGTTACGCTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAATTACGGTA 1762
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1814 AGTACATGGGTTACACTGGAGCTCCTCAGCATAGCACAAACGCAAACGCCAATTACGGTA 1873
Query 1763 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAACTACGGTGGACCCTTTGAATACA 1822
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1874 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAACTACGGTGGACCCTATGAATACA 1933
Query 1823 CAAACTCTCCAAACGAGACAGTGTATTACCACACACAAGCTCCTGCTGCAAACACTGCCA 1882
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1934 CAAACTCTCCAAACGAGACAGTGTATTACCACACACAACCTCCTGCTGCCAACACTGCCA 1993
Query 1883 TTCCATTAGCGTCTCCATACCAAAGCATGACACCAGCAGCAGCCGCAGCAGCTCTAGCCG 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 TTCCATTAGCGTCTCCATACCAAAGCATGACACCAGCAGCAGCCGCAGCAGCTCTAGCCG 2053
Query 1943 ATATGTCCAAGCAAATGGCTCTTGACGGCGGCAAACAGCAACAGCATATGGCTGCGTCTC 2002
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||
Sbjct 2054 ATATGTCCAAGCAAATGGCTCTTGACAGCGGCAAACAGCAACAACATATGGCTGTGTCTC 2113
Query 2003 AGCCGCTTTAA 2013
|||||||||||
Sbjct 2114 AGCCGCTTTAA 2124
Score = 76.8 bits (41), Expect = 6e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1718 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAATTACGGT 1761
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1874 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAACTACGGT 1917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85207878065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5