BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18240.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479322 jgi|Araly1|479322|fgenesh2_kg.3__2023__AT3G18240.1 2152 0.0
> Ahg479322 jgi|Araly1|479322|fgenesh2_kg.3__2023__AT3G18240.1
Length=1466
Score = 2152 bits (1165), Expect = 0.0
Identities = 1311/1379 (95%), Gaps = 19/1379 (1%)
Strand=Plus/Plus
Query 56 TCTCTGATCCGCCATGAGAGGAGCTCTCTTGAGAAATGCATCTCTCTGCGCTCGCAGAAT 115
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TCTCTGATCCGCCATGAGAGGAGCTCTCTTCAGAAATGCATCTCTCTGCGCTCGCAGAAT 60
Query 116 CATTCTTTCTCCTCGTATAACCCATCAGATCTCCCCCAATGTTCCCTTTCTCGCTCCAAT 175
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CACTCTTTCTCCTCGTATAACCCATCAGATCTCCCCCAATCTTCCCTTTCTCGCTCCAAT 120
Query 176 CGCCGCTCCTGCTGCTCCCAAGTTCAGATTTTTCTCCTCCG-A----A----TCCGGTGA 226
|||| |||| ||| ||| ||| ||||||||||||||||||| | | ||||||||
Sbjct 121 CGCCTCTCCAGCTCCTCTCAAATTCAGATTTTTCTCCTCCGAATCCGACTCGTCCGGTGA 180
Query 227 GAACTCGACTACGGCCCCTGAGTCTTCGCCGACTGATTCAC-CCGAGAAGAAAGATCTCG 285
||||||||||| ||||||| |||||||||||||| || | |||| ||||| |||||||
Sbjct 181 AAACTCGACTACTACCCCTGATTCTTCGCCGACTGAATC-CTCCGATAAGAAGGATCTCG 239
Query 286 TTGTAGAAGATGTAAGCAACAAAGAGCTTAAAAGCCGTATAGAGAAGTATTTCAATGAGG 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGTAGAAGATGTAAGCAACAAAGAGCTTAAAAGCCGTATAGAGAAGTATTTCAATGAGG 299
Query 346 GTAATGAAGATGCTTTACCCGGAGTTATTGAAGCACTTCTACAGAGAAGACTTG-TAGAC 404
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 300 GTAATGAAGATGCTTTACCTGGAGTTATTGAAGCACTTCTACAGAGAAGACTTGCT-GAC 358
Query 405 AAACACGCAGAGACTGATGATGAATTG-TTGGAAAAAATCGAGTCTCTACCTTTCAAAGA 463
||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||||||
Sbjct 359 AAACACGCAGAGACTGATGATGAATTGATTG-AAAAAATCGAGACTTTACCTTTCAAAGA 417
Query 464 TGATGTCAAGGATGAAGATTTTGAATCCGATTTCGAGGAAGCACATTCTACTGACGAAGA 523
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 418 TGATGTCAAGGATGAAGATTTTGAATCGGATTTCGAGGAAGCCCATTCTACTGACGAAGA 477
Query 524 ACTTGAGGATTTGTACAATTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAATGAGTT 583
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 GCTTGAGGATTTGTACAACTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAATGAATT 537
Query 584 TTTCAACATGGATGATAAGAAGTGGGATCACATGATTAGAGAAGGTATCCAACATGGGTG 643
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 538 TTTCAACATGGACGATAAGAAGTGGGATCACATGATTAGAGAAGGCATCCAACATGGCTG 597
Query 644 TCTTACTGATACTAAAGAATGCGAGGAGATTCTTGAGGATATGCTCAAATGGGACCAGCT 703
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTTACCGATACTAAGGAATGCGAGGAGATTCTTGAGGATATGCTCAAATGGGACCAGCT 657
Query 704 TCTTCCTGATGACTTGAAGAAAAAGGTTGAAGCAAAGTTTAATGAGCTTGGAGATATGTG 763
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 658 TCTTCCTGATGACTTGAAGAAAAAAGTTGAAGCAAAGTTTAATGAGCTTGGGGATATGTG 717
Query 764 TGAAAGAGGTGAAATTGAGGCTGAAGCAGCTTATGAGCTTTTTAAGGAATTTGAAGATGA 823
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 718 TGAAAGAGGTGAACTTGAGGCTGAAGCAGCTTATGAGCTTTTCAAGGAATTTGAAGATGA 777
Query 824 GATGGTAATTCAGTATGGGGATCAGATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAAC 883
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 AATGGTAATTCAGTATGGGGATCAAATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAAC 837
Query 884 AGATGCTTCCGATAGGAATACTGACTTGGATGATCCCCCTGGTAAAGGCCCAATCCTCAG 943
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 AGATGCTTCCGATAGGAATACTGACTTGGATGATCCCCCCGGTAAAGGCCCAATCCTCAG 897
Query 944 GTGGCAATCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAA 1003
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTGGCAGTCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAA 957
Query 1004 AGTTAAAATGTCTGTTACAGTGAAAGAGCTTGGGCTCTCAAAGCATCAGGCTAAAAGGCT 1063
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 AGTGAAAATGTCTGTTACAGTGAAAGAGCTCGGGCTCTCAAAGCATCAGGCTAAAAGGCT 1017
Query 1064 AAGGGAACTTGTAGGGAAAAGATACCATTCGGGGAAAGACGAGCTTACAATCACCAGCGA 1123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAGGGAACTTGTGGGGAAAAGATACCATTCGGGGAAAGACGAGCTTACAATCACCAGCGA 1077
Query 1124 GAGGTTTGAACACCGAGAGGAAAACAGGAAAGACTGCTTAAGAACTCTTTACGGGTTGAT 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGGTTTGAACACCGAGAGGAAAACAGGAAAGACTGCTTAAGAACTCTTTACGGGTTGAT 1137
Query 1184 AGAAGAAGCTGGGAAAGCCAACAAGATCGCTGAAGACATAAGAACTTCATATGTAAAACA 1243
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1138 AGAGGAAGCTGGGAAAGCCAACAAGATCGCTGAGGACATAAGAACTTCATATGTAAAACA 1197
Query 1244 AAGACTCCGTGCCAATCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAA 1303
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GAGACTCCGAGCCAATCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAA 1257
Query 1304 AGAATCAGATGCCATCAACGCTTGAACAAA-ACTTTTCCCGATCCATGAAGAATCTTT-G 1361
||||||||||||||||||||| |||| ||| ||||||||||||||||||| | | ||| |
Sbjct 1258 AGAATCAGATGCCATCAACGCCTGAA-AAAGACTTTTCCCGATCCATGAA-ATTTTTTTG 1315
Query 1362 ATGGTAACTCCTATCTTAGTTTGGTTTGCTTGTTGTATCTCATGAAGACATGAACCTTG 1420
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 ATGGTAACTCCTATTTTAGTTTGGTTTGCTTATTGTATCTCATGAAGACATGAACCTTG 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5