BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18250.1
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479323 jgi|Araly1|479323|fgenesh2_kg.3__2024__AT3G18250.1 403 4e-112
> Ahg479323 jgi|Araly1|479323|fgenesh2_kg.3__2024__AT3G18250.1
Length=280
Score = 403 bits (218), Expect = 4e-112
Identities = 262/283 (93%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 1 AGAAAGAGAGATGGCGAGACACTTATTAGAAGATGTAATGAGCATGGCCACCACAACAAC 60
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AGAACGAGAGATGGCGAGACACTTATTAGATGATGTAATGAGCATGGCCACCACAACAAC 60
Query 61 ACATTTCGATGCTAGTTACCTGTTTCATGTTGTGTTCCTGGCTGTGATCGGTTGTTGTAT 120
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 61 ACATTTCGATGCTAGTTACCTATTTCATGTTGTCTTCTTGGCTGTGATCGGTTGTTGTAT 120
Query 121 CCTCTCCGCTCTGTTATTCTCTTGTGCCGACGGAGTCTCCGACAACAGAGCCACTTCAGG 180
|||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||| ||
Sbjct 121 CCTCTCGGCTCTGTTATTCTCGTGTGCCGATGGAGCCTCCGACAACAGAGCCACTTCCGG 180
Query 181 CACCTCTACCGGTGGCGGAGGTTGTGGCGGTGCCGGTTGCGGTGGTGGTTGTGGAGGTTG 240
| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 181 AAACTCTACCGGTGGCGGAGGTTGTGGCGGTGCAGGTTGCGGAGGTGGTTGTGG---TTG 237
Query 241 AGATTTCATTTTTCTTCGTCAGGAAAATATAAACAGAACAGTC 283
||| ||||||| |||||||| |||||||| |||||||||||||
Sbjct 238 AGAATTCATTTGTCTTCGTCGGGAAAATAAAAACAGAACAGTC 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12476877603
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5