BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18260.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479324 jgi|Araly1|479324|fgenesh2_kg.3__2025__AT3G18260.1 1190 0.0
> Ahg479324 jgi|Araly1|479324|fgenesh2_kg.3__2025__AT3G18260.1
Length=838
Score = 1190 bits (644), Expect = 0.0
Identities = 775/836 (93%), Gaps = 17/836 (2%)
Strand=Plus/Plus
Query 24 TTACATTCATTTCATTGTTGTTTCTTACCGCAGTAACTTTTATCTTAATAAATTTGATCC 83
||||| | ||||||||||||||| |||||| | ||||||||||||||||||||| |||
Sbjct 13 TTACA-T-ATTTCATTGTTGTTT-TTACCGTAAAAACTTTTATCTTAATAAATTTCATCT 69
Query 84 AACCATGCCAATATTTACGGGATCGTCCTCCGATTCTGAAGACGAAAGAACGATCCATAA 143
|| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 70 AATCATGCCAATATTTACGGGATC-T--TCCGATTCTGAAGACGAAAGAACGATCCATAA 126
Query 144 AACAACTAAGCTCTTCACTCGTCAACGATCTATTCACTCTATATTTGGAGGTGGTAAAGT 203
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 127 AACAACTAAGCTCTTCACTCGTCAACGATCGATTCACTCTATATTTGGAGGTGGTAAAGT 186
Query 204 TGCGGATATTCTGTTATGGAGAGAGCCGAAAATAGCAGCAACATTGGTGATAGGAGTGAG 263
||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 187 TGCAGATATTTTATTATGGAGAGAGCCGAAAACAGCAGCAACATTGGTGATAGGAGTGAG 246
Query 264 CATCTTATGGTTCTTAATGGAAGTAGTGGAATACAATTTCATAACCCTAATTTGTCATGC 323
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 247 CCTCTTATGGTTCTTAATGGAAGTAGTGGGATACAATTTCATAACCCTAATTTGTCATGC 306
Query 324 TTCCATGACCTCCATGCtttttttCTTCATTTGGTCTACTGCTTCTGATTTTCTCAATTG 383
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 307 TTCCATGACCTCCATGCTTCTTTTCTTCATTTGGTCCACTGCTTCTGATTTTCTCAACTG 366
Query 384 GGAAAGACCACTAATACCAGAAGTTGTACTAGACGAATCTTCTTTCAAACAATTAGCAAG 443
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 367 GGAAAGGCCAATAATACCAGAAGTGGTACTAGACGAATCTTCTTTCAAACAATTAACAAG 426
Query 444 AAGCTTCCATGTTAGATTCAACCAAATCCTCA-CAAAGCTTCTTGACGTTGCTTGTGGAA 502
|||||| ||||||||||||||||||||| | | | |||||||||||| ||||||||||||
Sbjct 427 AAGCTTTCATGTTAGATTCAACCAAATCTT-AGCGAAGCTTCTTGACATTGCTTGTGGAA 485
Query 503 GAGATCCTCCTCTCTTTTTTCTCACA------ACGATCTCGCTTTATATCGTATCCATCA 556
|||||||||| |||||||| |||||| || ||||| || |||||| |||||||||
Sbjct 486 GAGATCCTCCACTCTTTTTCCTCACATTGGGTACCATCTCACTCTATATCCTATCCATCA 545
Query 557 TCGGGACATATTTCAACTTTGTGAATCTTCTCTTCATAGGGTTTGTAAGCATGCAAACCT 616
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||
Sbjct 546 TCGGGACATATTTCAACTTTGTGAATTTTCTGTTCTTAGGGTTTGTAAGCATGCACACCT 605
Query 617 TACCGGTTATGTATGAGATGTACGAGGACGACGTGGATACAGCGGCGGGTAAGTTGATGA 676
||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||
Sbjct 606 TACCGGTTATGTATGAGATGTACGAGGACGACGTGGATAGAGTGGCGGGTAAATGGATGA 665
Query 677 GGAAGATGAAGAAGCTGTACAAGAAAGTCGATACGAATGTTCTTAGTAAAATCCCAAGAG 736
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 666 GGAAGATGAAGAAGCTGTACAAGAAAGTCGATTTGAATGTTCTTAGTAAAATCCCAAGAG 725
Query 737 GAACTGTCAAAAACAAGAAATTTACTTAATTCTGATCATTCTTTACTTATAGAGATAATG 796
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 726 GAACTGTCAAGAACAAGAAATTTACTTAATTCTGATCATTGTTTACTTATAGAGATAATA 785
Query 797 TGTTTGCTACTGTATTTATGCGACCTCATCAACCCAAATTAATATACATATCTGTT 852
|| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 786 TGATTGCTACTGTATTTATGCGACCTCA--A-CCCAAATTAATATACATATCTGTT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5