BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18270.1
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479325 jgi|Araly1|479325|fgenesh2_kg.3__2026__AT3G18270.1 2045 0.0
Ahg939863 jgi|Araly1|939863|scaffold_600407.1 69.4 8e-11
> Ahg479325 jgi|Araly1|479325|fgenesh2_kg.3__2026__AT3G18270.1
Length=1502
Score = 2045 bits (1107), Expect = 0.0
Identities = 1399/1533 (91%), Gaps = 47/1533 (3%)
Strand=Plus/Plus
Query 106 ATGTTTTCGATTTTATCATCATCTTCTTCTTCACAACTCGTCAATTCAACTCTCAATTTC 165
||||||||||| |||| | |||||||||| | |||||||||||||||||| ||| ||
Sbjct 1 ATGTTTTCGATCGTATC-T--TCTTCTTCTT--C-ACTCGTCAATTCAACTCTAAATATC 54
Query 166 CAAAATTCGCCGAAATCTCCGATCACCGTTATGTCGAAGACGTCTAAATTCAAAACCCTG 225
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 55 CAAAATTCGCCGAAATCTCCGATCTCCGTTATGTCGGCGACGTCTAAATTCAAAACCCTA 114
Query 226 ACGGAGAATTTCACCGTGAGAGTGCTTAAAGCAGAGAATCGCGAACTGAACGTGGCTCTG 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 115 ACGGAGAATTTCACCGTGAGAGTGCTTAAAGCAGAGAATCGCGAACTGAACGTGCCTCTG 174
Query 286 CTCTCACCTTTCACTATCGCTTCTTCACGGCTTGATTCTGTCAGTAATGTTGCGATTCGG 345
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 175 CTCTCACCTTTCACTATCGCTTCTTCACGGCTTGATTCAGTCAATAACGTTGCGATTCGG 234
Query 346 ATTGAGCTCAACGATGGATTTGTGGGTTGGGGAGAAGCTCCGATTTTGCCGTCGGTAACG 405
|||||||| | |||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 ATTGAGCTTAGCGATGGGTGTGTCGGTTGGGGAGAAGCTCCGATTTTGCCGTCGGTAACG 294
Query 406 GCGGAGGATCAGATAATGGCTATGGTAAAAGCGCGGGAAGCTAGTGAGTTTCTGAGAGAG 465
|||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||
Sbjct 295 GCGGAGGATCAGATAACGGCCATGGTAAAAGCGCGGGAAACTTGTGAGTTTCTGAGAGAG 354
Query 466 TTACCGGAGATGAAACTCGGTAATGTTCTTCAGGAGATCGGAAGATTTCTTCCTGGTCAT 525
||||||||||||||||| ||||||| |||| ||||||||| ||||||||| |||||||||
Sbjct 355 TTACCGGAGATGAAACTTGGTAATGCTCTTAAGGAGATCGAAAGATTTCTCCCTGGTCAT 414
Query 526 CAGTTTGCTTCTGTAAGAGCTGGGATGGAGATGGCTATGATTGATGCAGCTGCTAAGAGT 585
|| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 415 CAATTTGCTTCTATAAGAGCTGGGATGGAGATGGCTATGATTGATGCAGCAGCAAAGAGT 474
Query 586 GTAAGAGTGCCATTGTGGAAACTATTTGGTGGAGCTTCAAGTACGATTACTACAGACATA 645
||| || |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 475 GTAGGAATGCCATTGTGGAAACTATTTGGTGGAGCTTCAAGTATTATTACTACCGACATT 534
Query 646 ACAATTCCGATAGTTTCTCCGGCTGAAGCTTCCGTA-TT-GGCCTCAAAGTATAGAAAAC 703
|||||||| ||||||||||||| ||||| || || || ||| ||||||||||||||||
Sbjct 535 ACAATTCCTATAGTTTCTCCGGAGGAAGCGTC--TACTTTGGCTTCAAAGTATAGAAAAC 592
Query 704 GAGGTTTTGAAACCTTGAAGCTCAAGGT-GGGAAAGAATCTTAAGGCTGACATAGAAGTT 762
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 593 GAGGTTTTGAAACCTTGAAGCTCAAGGTCGGGAA-GAATCTTAAGGCTGACGTAGAAGTT 651
Query 763 CTCCAGGCTATACGTGCAGTCCACCCTACTTGTTCCTTCATTTTGGATGCCAATGAGGGT 822
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 652 CTCCAGGCTATACGTGCAGTCCACCCTACTTGTTCCTTTATTTTGGATGCAAATGAGGGT 711
Query 823 TATCAAACAGAGGAAGCTGTTAAAGTTCTCGAGACGCTGCATGAAATGAAGGTTACACCG 882
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 712 TATCAAACAGAGGAAGCTGTTAGAGTTCTTGAGACGCTGCATGAAATGAAGGTTACACCG 771
Query 883 GTTCTCTTTGAACAACCTGTCCACAGAGACAATTGGGAGGGTCTCAGTCACGTGACTCGA 942
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 772 GTCCTCTTTGAACAACCCGTCCACAGAGACAATTGGGAAGGTCTCAGTCACGTGACTCGA 831
Query 943 ACTGCAAAGAACAGATTCGGAGTCTCTATTGCAGCAGATGAGAGTTGCAGAGGCTTGACT 1002
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 832 ACTGCAAAAAACAGATTCGGAGTCTCTGTTGCAGCAGATGAGAGTTGCAGAGGCTTGACT 891
Query 1003 GATCTCaaaaaaaTCATAGAAGGTAATATCGTAGATGTTGTGAACATCAAACTCGCCAAA 1062
|||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 892 GATCTCAAGAAAATCATAGAAGGTGGTATCGTAGATGTTGTTAACATCAAACTCGCGAAA 951
Query 1063 ACCGGAATCCTCGAGTCTCTTGAGGTAATTGAATTGGCTA-GATCATCTGGCATTGAGCT 1121
||||||||||||||| | |||||||||||||||||||||| | |||||||| ||||||||
Sbjct 952 ACCGGAATCCTCGAGGCCCTTGAGGTAATTGAATTGGCTAAG-TCATCTGGAATTGAGCT 1010
Query 1122 TATGATAGGGGGAATGGTGGAGACTAGATTAGCAATGGGGTTCTCTGGTCACCTTGCTGC 1181
||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1011 AATGATGGGGGGAATGGTGGAGACTAGATTAGCAATGGGGTTCTCCGGTCACGTTGCTGC 1070
Query 1182 TGGCCTTGGATGCTTCAGATTCATCGACTTGGACACTCCGCTTCTTCTGGCTGATGATCC 1241
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1071 TGGCCTTGGATGTTTCAGATTCATCGACTTGGACACTCCGCTTCTTCTGTCTGATGATCC 1130
Query 1242 AGTTCAAGGTGGCTACAAAGCATGTGGTGCTGTCTATGAGTTTAAAGATGAAGGCGGTCA 1301
||||||||||||||||||||| || || |||||||| |||||||| ||||||||||||||
Sbjct 1131 AGTTCAAGGTGGCTACAAAGCTTGGGGCGCTGTCTACGAGTTTAACGATGAAGGCGGTCA 1190
Query 1302 CGGAGGATATCTTCAGTGGAATGATGTTGC-TCAGTGAAATTCCTTTTGTCTACTTAGGT 1360
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 1191 CGGAGGATATCTTCAGTGGAATGATGTTGCGT-AGTGAAATTCCTTCAGTCTACTTAGGT 1249
Query 1361 CCCTTTTCTTTTGTTCAATAGGATTTTAATCGTAAGTTTAATGTTGGTTTTGGGTTTTGT 1420
||||||||||||| || | ||| ||| || | | | || | ||||||||
Sbjct 1250 CCCTTTTCTTTTG---AA--G--TTT-AAT-GTT-G---A-T-TT--T---GGGTTTTGG 1289
Query 1421 AAAGGCTAATCTTGGTCCTAAATTCTCAGTATGTGTTAGTTGAGAGTGTATGTAATCTAG 1480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1290 AAAGGCTAATCTTGGTCCTAAATTCTCAGTATGTGTTAGTTGAGAGTGTATGTAATATAC 1349
Query 1481 AATCTTTGTAACTTCAGCCCCAGGGAGTA--A--TAAGTGTATGAA-TTCATTACAGTGA 1535
|| |||||||| ||||||||||||||||| | ||| |||| ||| ||||||||| |||
Sbjct 1350 AAGCTTTGTAATTTCAGCCCCAGGGAGTAGCAAATAAATGTAGGAAATTCATTACACTGA 1409
Query 1536 TCT-GCTTGATATCTGTCTGAAACACACA-ACA-CA--GGTCTAAGTCACAGAGCTTATA 1590
||| | ||||||||||||||||||||||| ||| || ||||||| ||||||||||| |
Sbjct 1410 TCTTGATTGATATCTGTCTGAAACACACACACAACACAGGTCTAATTCACAGAGCTTGTT 1469
Query 1591 ATAGATCACAAT-ATGTGATTCTTGTTTCGATC 1622
|||||||||||| | ||| ||||||||||||||
Sbjct 1470 ATAGATCACAATTAAGTGCTTCTTGTTTCGATC 1502
> Ahg939863 jgi|Araly1|939863|scaffold_600407.1
Length=1561
Score = 69.4 bits (37), Expect = 8e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 59 CAAATTGGTGTTCGCGGTGGTGATGAAGAATCCGCTGAGA 98
|||||||||||||||||||||||||||||||||| |||||
Sbjct 1478 CAAATTGGTGTTCGCGGTGGTGATGAAGAATCCGTTGAGA 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792031020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5