BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18300.1
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341965 jgi|Araly1|341965|fgenesh1_pg.C_scaffold_3001728 1408 0.0
> Ahg341965 jgi|Araly1|341965|fgenesh1_pg.C_scaffold_3001728
Length=1452
Score = 1408 bits (762), Expect = 0.0
Identities = 850/893 (95%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 1139 TCCTGCaaaaaaaaaGTCTCTGAGCAGAGTTTCATCTTTCTATCAAACTA-AGCAAAACG 1197
||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||| |
Sbjct 562 TCCTGCAAAAAGAAAGTCTCTGAGCAGAGTTTCATCTTTCCGCCAAAC-AGAGCAAAAAG 620
Query 1198 GACCATCATGATCTGCACGGAGTCAAACCACCAGCGGTTTTCGTTTGCTGGTGATCTCGG 1257
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 621 GACCATCATGATCTGCACGGAGTCAAACCACCAGCGGATTTCGTTTGCTGGTGATCTCGG 680
Query 1258 CCAGTCCGATAAAGGAACTCCTATGGAACAACAACCATCAGGCCCGGTCCGAAGAGACAC 1317
|||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 681 CCAGTCCGATAAAGGACCTCCTATGAAACATCAACCATCAGGCCCGGTTCGAAGAGACAC 740
Query 1318 CACTCTTTTGGATTCATCAAACTCAGATTTCGAGTTCCACATCTCAAGCAACTTTGATCC 1377
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 741 AACTCTTTTAGATTCATCAAACTCAGATTTCGAGTTCCACATCTCAAGAAACTTTGATCC 800
Query 1378 TGGAGATTCCTCACCAGCTGACGAGATATTTGCGGACGGCATGATCCTCCCAGTTCTTCC 1437
|| |||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 801 TGAAGATTCCTCACCAGCTGACGAGATCTTTGCAGACGGCATGATCCTCCCGGTCCTTCC 860
Query 1438 TTTCCAAGTCACAGCTACATCCACCATGCCAAAACGTCTCTACAAATATGAGCTCCCTCC 1497
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TTTCCAAGTAACAGCTGGATCCACCATGCCAAAACGTCTCTACAAATATGAGCTCCCTCC 920
Query 1498 TATTGTCTCTGCTCCAACCTTATCCTCTTATCTTCCTCCTCTGCCTTTACCATTGCCTGA 1557
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 921 TATTGTCTCTGCTCCATCCTTATCCTCCTATCTTCCTCCTCTGCCTTTACCATTGCCTGA 980
Query 1558 ACACTCAAGAAAATACAGCGTGAAAGAAACTCGAGGAAGCCTAAATGGACGAGGGAGCGG 1617
|||||| | |||||||||||||||||||||||| |||||| ||||||| |||||||| ||
Sbjct 981 ACACTCGATAAAATACAGCGTGAAAGAAACTCGTGGAAGCGTAAATGGTCGAGGGAG-GG 1039
Query 1618 -TGCAAATTCGGATTCAGAGGCAGAGAAATCATCAAAGTCGTTTTGGAGCTTCAAGAGAA 1676
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TTGCCAATTCGGATTCAGAGGCAGAGAAATCATCAAAGTCGTTTTGGAGCTTCAAGAGAA 1099
Query 1677 GCTCAAGCCTGAACTGCGATATAAAGAAGAGTCTGATCTGTTCGTTTCCTCGTTTAACGA 1736
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GTTCAAGCCTTAACTGCGATATAAAGAAGAGTCTGATCTGTTCGTTTCCTCGTTTAACGA 1159
Query 1737 GAAGCAATTCCACAGGATCAGTGGCGATTTCGAAGAGGGAAATGCTTAGGGACATTAACA 1796
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1160 GAAGCAATTCCACAGGATCAGTGATGAATTCGAAGAGGGAAATGCTTAGGGACATTAACA 1219
Query 1797 AGCATAGCTCGCAGAGACATGGAGTCCCACGTCCAGGGGTGAATCCATCATCTCATATGC 1856
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1220 AGCATAGCTCGCAGAGACATGGAGTCCCACGTCCAGGGGTGAATCAATCATCTCATATGC 1279
Query 1857 GTCCTCCTTCCTCTTTCTGCTGCAGCTCGTATCAGTTCAGGCCACAAAAACACGCCGGAA 1916
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GTCCTCCTTCATCTCTCTGCTGCAGCTCGTATCAGTTCAGGCCACAAAAACACGCCGGAA 1339
Query 1917 AGAATGGTGGCGGAAGAGGAGGAAGTTTTTGGATTGCTCCGGTGATCGGTGGTCCATCTC 1976
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGAATGGTGGTGGAAGAGGAGGAAGTTTTTGGATTGCTCCGGTGATCGGTGGTCCATCTC 1399
Query 1977 CGTTTGGGTTAGGATCCATCTTACGACTTACGAAAGAGaaaaaaaaGAAGTAA 2029
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1400 CGTTTGGGTTAGGATCCATCTTACGACTTACGAAAGAGAAGAAAAAGAAGTAA 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82084477975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5