BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18310.1
Length=2789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479330 jgi|Araly1|479330|fgenesh2_kg.3__2031__AT3G18310.1 3805 0.0
Ahg929709 jgi|Araly1|929709|scaffold_302166.1 274 3e-72
> Ahg479330 jgi|Araly1|479330|fgenesh2_kg.3__2031__AT3G18310.1
Length=2705
Score = 3805 bits (2060), Expect = 0.0
Identities = 2449/2634 (93%), Gaps = 37/2634 (1%)
Strand=Plus/Plus
Query 45 GATTACCGATGAATGGGGACGCAAACTCTGCATCACCTCCTCTCCCGAAGAATCCATTGG 104
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 6 GATTACCGATGAATGGGGACGCAAACTCTGCATCTCCTCCTCTCCCGAAGAATCCATTGG 65
Query 105 TCCTTTCTTCTCGAACCCATCAGACTCGCAGCTGctcttctcttctccctcactctctcc 164
|||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 66 TCCTTTCTTCTCGAACCCGTCAGATTCTCAGCTTCTCTTCTCTTCTCCCTCACTCTCTCC 125
Query 165 tccaattctctctATTACCCCTCACTTAACTCCCGCGCGTTTTCTCTCCGTCTCCGGCGT 224
||| |||||||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 126 TCCGATTCTCTCTACTATCCCTCACTTCTCTCCCGCGCGTTTTCTCTCCGTCTCCGGCGT 185
Query 225 CCCTCCGTCGGATTCTTCCGCAATCAATTCCTCTTTTAAAATTTC-CAATCCGCACGATG 283
||||||||||||||||||||||||| |||||||||| || | ||| ||||||||||||||
Sbjct 186 CCCTCCGTCGGATTCTTCCGCAATCCATTCCTCTTTCAATA-TTCTCAATCCGCACGATG 244
Query 284 ATACCGTTAGGGTTCTCTCCTACAATCGCCTCCAGTTTCTACCTTTCCCCAGTAAAAATT 343
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ATACCGCTAGGGTTCTCTCCTACAATCGCCTCCAGTTTCTACCTTTCCCCAGTAAAAATT 304
Query 344 CAGTCTTGGTGTTTTTCCCCACAGGGACTAACCTTGATCAAATTGGGTTCTTGCTGCTTT 403
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 305 CAGTCTTGGTGTTTTTCCCCACAGGGACTAATCTTGATCAAATTGGGTTCTTGCTGCTTT 364
Query 404 CTTAT-GGAGATTCCGGTGGTTTACAAGTCACGGGTTCGGACGAAGGTGACGTTTTTGTG 462
|| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 365 CT-ACCGGAGATTCCGGTGGTTTACAAGTCACGGGTTCAGACGAAGGTGACGTCTTTGTG 423
Query 463 GCAACAGAGAGATTGTTTTCTCGAATTTTGAAGATTTTGGTGCAACCTGTTAGTGACTTT 522
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 424 GCAACAGAGAGATTATTTTCTCGAATTTTGAAGATTTTGGTGCAACCTGTTAGTGATTTT 483
Query 523 GGAGCGTATAAGTGTTCTTCTTCTTCGGGCGAGTTGGGATACGTTTTGGTTTATTCGTT- 581
|||||||||||||||||||||||| || ||| |||||||||||||||||| ||| |||
Sbjct 484 GGAGCGTATAAGTGTTCTTCTTCT--GG-CGAATTGGGATACGTTTTGGTTCATT-GTTT 539
Query 582 GTATTCGATTCATTGGTACTGTGTCAAGTATGATGAGTCTCAAGGTAAGCCGGTTTTGAG 641
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 GTATTCGATTCATTGGTACTGTGTCAAGTATGATGAATCTCAAGGTAAGCCGGTTTTGAG 599
Query 642 AAACCTCGGATGTAAGCAGTTTAAGAGGTTTGTGATTGTGAGCGCTTCTTGGAGCCCTCA 701
|||| | || | ||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 600 AAACTTGGGGTCTAAGCAGTTTAAGAGGTTTATGATTGTAAGCGCTTCTTGGAGCCCTCA 659
Query 702 TGTTACTGGAGAGTGTCTACTCTTGTTAGATAACGGTGAGGTCTTTGTGTTTGATTTGAG 761
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 660 TGTTACTGGAGAGTGTCTACTCTTGTTAGACAACGGTGAGGTCTTTGTGTTTGATTTGAA 719
Query 762 TCAGAGACATTGTAGAGTTAGAGGTTGCAAACTGAAAGTTTCTTGGGAGAGTCAAGGGAA 821
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCAGAGACATTGTAGACTTAGAGGTTGCAAACTGAAAGTTTCTTGGGAGAGTCAAGGGAA 779
Query 822 ATCAGTGAATAAGAGTTGGTTAGGATGTGAATTTGGTTGGAGAGTTGGGGTTTATATCGT 881
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 780 ATCAGTGAATAAGAGTTGGTTAGGGTGTGAATTTGGTTGGAGAGTTGGGATTTATATCGT 839
Query 882 TGCTCGGTCTGATGCACTATTTGTTATTGTCAAAAGCACTGAGGATTGCAGTGTGAGATG 941
|||||||||||||||| | ||||||||| || |||| ||||| ||||||||||||||||
Sbjct 840 TGCTCGGTCTGATGCAGTCTTTGTTATTACCAGAAGCTCTGAGAATTGCAGTGTGAGATG 899
Query 942 TTTATTGGAAGTTGAGAGTCTGAATACGGCCGGAGCAGAAGTGTTTGTTGGGTTTGCAAA 1001
|||||||||| |||||| |||||||| ||| ||| |||||||||||||| ||||||||||
Sbjct 900 TTTATTGGAATTTGAGACTCTGAATATGGCTGGAACAGAAGTGTTTGTTAGGTTTGCAAA 959
Query 1002 GGCGGGTAGTGACGGTTTTCGGTTTGTTCTTGCTTCCCAGAGCTATGTATTTCTCTGTGA 1061
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 960 GGCGGGTAGTGACGGTTTTCGGTTTATTCTTGCTTCCCAGAGCAATGTATTTCTTTGTGA 1019
Query 1062 TGCGAGATCAGGTGTGCCTTTGTTGAAATGGCAGCATGATGTTGAGAAGCCTTGCTTTAT 1121
| |||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCCGAGATCAGGAGTACCCTTGTTGAAATGGCAGCATGATGTTGAGAAGCCTTGCTTTAT 1079
Query 1122 GGATGTCTATAGCTTGTCTGAACTTGGAGTTAGGACTTTTGAATCGAATACTTCTTGCCT 1181
|||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
Sbjct 1080 GGATGTTTATAGCTTGTCTGAACTCGGAGTTAGGACCGTTGAATCAAATACTTCTTGCGT 1139
Query 1182 CATAATAGGGTCGTTTTGGAATGCACAATCTCAAATGTTCTGTTTTGGACCTTCTCCTTC 1241
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 CATAATTGGGTCGTTTTGGAATGCACAATCTCAAATGTTCTGTTATGGACCTTCTCCTTC 1199
Query 1242 TGTTGGGAAGGATCCTTCTTCCTTGTATGTATGGGAGCTTCCACACAATCTACTCTTACC 1301
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGTTGTGAAGGATCCTTCTTCCTTGTATGTATGGGAGCTTCCACACAATCTACTCTTACC 1259
Query 1302 TGTCGGAAAGTGTCTATGCGGAGATTGTCTATTTAGAGAAGTGATGATTAAGGAGTCTCT 1361
||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 1260 TGTTGGAAAGTGTCTATGCGGAGATTGTGTATTTAGAGAAGTAATGATGAAGGAGTCTCT 1319
Query 1362 TCCCGAGTGGATTGATTGGCAGAAAAAGAGTGTTCTTGTTCTCGGTTTTGGCGTTTTGAA 1421
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1320 TCCCGAGTGGATCGATTGGCAGAAAAAGAGTGTTCTTGTTCTCGGTTTTGGTGTTTTAAA 1379
Query 1422 CAAGTACCTTCCACTTGGGTCGTCAGATCAATCTTCGGGGTTTACTTTGAT-CAGGTTAA 1480
||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||
Sbjct 1380 CAAGTACCTTCCACTTGGGTCATCAGATCAATCTTCCGGGTTTACTTTGATTC-GGTTAA 1438
Query 1481 CATCCTCAGGGAAGCTTGAAGCAGTCAAGTTCCGTGCTTCTCGTTTAAAACAT-TTAGAA 1539
||||||| || |||||||||||||||||||| || ||||||||||||||| | ||||||
Sbjct 1439 CATCCTCCGGTAAGCTTGAAGCAGTCAAGTTTCGAGCTTCTCGTTTAAAA-AGCTTAGAA 1497
Query 1540 GTAGTAGCTCACAAAGGTTCGGCTTGCAAATCCGATGAGGTGAATTTACTGTACCTCCCT 1599
|||||||||||||||| |||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1498 GTAGTAGCTCACAAAGATTCGGCCTGCAAATCCGACGAGGTGAACTTACTGTACCTCCCT 1557
Query 1600 GATGACGAGGAATACAAATTCCCGAGACGTTTT-AACTATCTCGAACTCGAGTATCTCTC 1658
||||||||||||||||||||||| || || | | || |||||||||||| | ||||||||
Sbjct 1558 GATGACGAGGAATACAAATTCCCAAGTCGATATGAA-TATCTCGAACTCAACTATCTCTC 1616
Query 1659 TGCTCACAG-AAAAGGGATGCTCGCTGGGTTTTTAGATTCAAAGATGAGGACAGAATCAT 1717
| ||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1617 TTCTCAC-GCAAAAGGGATGCTCGCTGGGTTTTTAGATACAAAGATGAGGACAAAATCAT 1675
Query 1718 CAGATTT-CAAGAAGAGTGAATCTTTTAGCTTAATCTGCCATGAAGAGTTATGTAAGAAG 1776
| ||||| || ||||||| ||||||| ||||||||||| || || |||||||||||||||
Sbjct 1676 CGGATTTGCA-GAAGAGTAAATCTTTCAGCTTAATCTGGCACGAGGAGTTATGTAAGAAG 1734
Query 1777 TTGAAGATTTGCGGATTTGGTAAAGGCAGATCTGCCTCTAGCATAACCGCAGTCTTTGAG 1836
|||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 1735 TTGAAGATTTGCGGATTTGGTAGAGACAGATCTTCCTCTAGCATAACCGCAGTCTTTGAG 1794
Query 1837 AATATCAATTCACCCACAAGTGTTTTCGACATTGCATTGAGAGAAACCTGGTCAAGCTTA 1896
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1795 AATATCGATTCACCGACAAGCGTTTTCGACATTGCATTGAGAGAAACCTGGTCAAGCTTA 1854
Query 1897 CCTAAAGAGATTTTGATGCTTGCATTCTCTAACTACTCTGAGTTTGCAGATGTTCTGGTA 1956
|||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1855 CCTATAGAGATTTTGTTGCTTGCATTCTCCAACTACTCTGAGTTTGCAGATGTTCTGGTA 1914
Query 1957 GACAAGAAGAAACAGTCTCTCGAGTTCTTAGTTGTTCCAGAATTCCCACAGTTACCGCCT 2016
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1915 GACAAGAAAAAACCGTCTCTCGAGTTCTTAGTTGTTCCAGAATTCCCACAGTTACCACCT 1974
Query 2017 TTCTTGTTAAGGAATCCTTCAAGCCGGAGTAGCAAATGGTCAAAGAAGGAGCAACCCGGT 2076
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1975 TTCGTGTTAAGGAAACCTTCAAGCCGGAGTAACAAATGGTCAAAGAAGGAGCAACCCGGT 2034
Query 2077 GTTGAGGTCGTTGGTCCTGTTGTTCCACTTCCAGTTCTCATCACACTCCATGAGTTCCAT 2136
|||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2035 GTTGAGCTTGTTGGCCCTGTTCTTCCACTTCCAGTTCTCATCACACTCCATGAGTTCCGT 2094
Query 2137 AACGGATGTCTCAATTCAGAACAAGAGTTCTCGCCTGAAGCAGAGTTCTATAACCGATGC 2196
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 2095 AACGGATGTCTCAATTCAGAACAAGAGTTCTCGCCTGAAGCAGAGTTATCTAACCGATGC 2154
Query 2197 AATCAAATCTCCAAAGCCACCCGCCAGATCGCAAACTCAGGTCGACACGAGACAACCATT 2256
|||||||||||||||| |||||| || | ||||||||||||||| ||||||||||||||
Sbjct 2155 AATCAAATCTCCAAAGTAACCCGCGAGCTTGCAAACTCAGGTCGAGACGAGACAACCATT 2214
Query 2257 TCACTTGACGAAGACCGAGCCGATGAAATGTGGCTCAACAGTGATTCACAGGAGGAGAAA 2316
||||||||||| |||| || |||| |||||||||||||||||||||||||| ||||||||
Sbjct 2215 TCACTTGACGATGACCTAGACGATAAAATGTGGCTCAACAGTGATTCACAGAAGGAGAAA 2274
Query 2317 AAGACGTTCATTGCTTATCGTCCGATAACAAAAACAGCTGAATCAGACAGACTACAGCAA 2376
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 2275 AAGACGTTCATTGCTTATCGTCCGATCACAAAGACAGCTGATTCAGACAGACTACAGCAA 2334
Query 2377 GAAGTCACAACGTTTGTCTCCAGAATACGTGGTTGTAAAGAAGGTGATGATAATGCTGTA 2436
|||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 2335 GAAGTCACTACGTTTGTCTCCAGAATGCGTCGTTGTAAAGAAGGTGATGATAATGCTGGA 2394
Query 2437 GGAAGAAGAGGGCTTGAACTGTTCGATGAGTTGTCTCCGGTCGAGATGTT-CTTCGAAAA 2495
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2395 GGAAGAACAGGGCTTGAACTGTTCGATGAGTTGTCTCCGGTCGAGAT-TTGCTTCGAAAA 2453
Query 2496 TCGGGAAGTGAATTTCGATAAATTCGATATGAAAGCTATGCTTACGGACAAGACGTTTCA 2555
|||||||||||||||||| | | || || ||| |||| || |||||||||||
Sbjct 2454 TCGGGAAGTGAATTTCGACA----C--TA--AA-GCTTTGCTAACTTCCAAGACGTTTCT 2504
Query 2556 CTCTCAATGGCAAG-ATCGATCATCTTCATATCAAGAGTTTCTTTCTCAGTACCATCTTA 2614
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2505 CTCTCAATGGCA-GCATCGATCATCTTCATATCAAGAGTTTCTTTCTCAGTACCATCTAA 2563
Query 2615 AAAAATGAGAGAGATATC----TCCCACGGCTTCACC-ACCAATTTTGTAATTT 2663
|||||||||||| || || ||||||||||||||| | ||||||||||||||
Sbjct 2564 AAAAATGAGAGATATCTCCCAGTCCCACGGCTTCACCCATCAATTTTGTAATTT 2617
Score = 122 bits (66), Expect = 1e-26
Identities = 86/95 (91%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 2696 ATTATGGTTTCTTGGTATTATTGTCATGTAACCAAACTTGGGATGTAAatatatatatat 2755
||| ||||||||||||||| ||||| ||||||||||| ||| | ||||||||||||| ||
Sbjct 2614 ATT-TGGTTTCTTGGTATTCTTGTCTTGTAACCAAAC-TGGTACGTAAATATATATACAT 2671
Query 2756 TTATG-AATTTTCGTTTTGAAAATTCAAATTACGT 2789
||| | |||||||||||||||||||||||||||||
Sbjct 2672 TTA-GAAATTTTCGTTTTGAAAATTCAAATTACGT 2705
> Ahg929709 jgi|Araly1|929709|scaffold_302166.1
Length=1477
Score = 274 bits (148), Expect = 3e-72
Identities = 237/277 (86%), Gaps = 18/277 (6%)
Strand=Plus/Plus
Query 1276 GAGCTTCCACACAATCTACTCTTACCTGTCGGAAAGTGTCTATGCGGAGATTGTCTATTT 1335
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||
Sbjct 1215 GAGCTTCCACACAATCTACTCTTACCTGCCGGAAAGTGTCAATGCGGAGATTATGTATTT 1274
Query 1336 AGAGAAGTGATGATTAAGGAGTCTCTTCCCGAGTGGATTGATTGGCAGAAAAAGAGTGTT 1395
|||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 1275 AGAGAAGTGATGATGAAGGAGTCTCTACCCGAGTGGATCAATTGGCAAAAAAAGAGTGTT 1334
Query 1396 CTTGTTCTCGGTTTTGGCGTTTTGAACAAGTACCTTCCACTTGGGTCGTCAGATCAATCT 1455
| ||||||||||||||| ||||| ||||||||||||||| | | |||||||
Sbjct 1335 CATGTTCTCGGTTTTGGTGTTTTAAACAAGTACCTTCCA---G-------A--TCAATCT 1382
Query 1456 TCGGGGTTT-ACTTT-GATCAGGTTAACA-TCCTCAGGGAAGCTTGAAGCAGTCAAGTTC 1512
|| | ||| | ||| |||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 1383 TCCGC-TTTCAATTTTGATCCGGTTAACAATCCTCAGGAAATCTTGAAGCAGTCAAGTTC 1441
Query 1513 CGTGCTTCTCGTTTAAAACA-TTTAGAAGTAGTAGCT 1548
|||||| | |||||||| | |||||||||||| |||
Sbjct 1442 TGTGCTTTTTGTTTAAAA-AGTTTAGAAGTAGTTGCT 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105243346935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5