BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18330.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 974 0.0
Ahg952175 jgi|Araly1|952175|scaffold_43900002.1 126 3e-28
Ahg933278 jgi|Araly1|933278|scaffold_401266.1 87.9 1e-16
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 63.9 2e-09
> Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1
Length=1546
Score = 974 bits (527), Expect = 0.0
Identities = 686/762 (90%), Gaps = 13/762 (2%)
Strand=Plus/Plus
Query 1 ATGCCGATGCCGAATCTTCCAAAGGAGTTGGTAGAGGAGATTCTCAGCTTTGTTCCGGCC 60
||| |||| || |||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct 402 ATGACGATACCAAATCTTCCAAAGGATTTGGTAGAGGAGGTTCTCAGTTTTGTTCCGGCC 461
Query 61 ACATATCTGAAACGTTTGAGCGCTACTTGCAAACCATGGAACCGTTTGATCCACAACGAC 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 462 ACATATCTGAAACGTTTGAGCTCTACTTGCAAACCATGGAACCGTTTGATCCACAACGAC 521
Query 121 AAGAGATTCGCGAGAAAGCACTACGATAACGCCGCAAAGGAGTTTCTGGTTTTCATGATG 180
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 522 AAGAGATTCGCAAGAAAGCACTTCGATAACGCCGCAAAGGAGTTTCTGGTTTTCATGTTG 581
Query 181 AGGAAGAACTTCAGGATTAT-TCGGAGAGGCGTCAATCTCCATGGAGCTGATCCATCTGC 239
|||||||||||||||||| | |||| | ||||||||||||||||| |||||||||||||
Sbjct 582 AGGAAGAACTTCAGGATT-TGTCGGCTAAGCGTCAATCTCCATGGAACTGATCCATCTGC 640
Query 240 AGAGGTGAAAGGTGAACTTACCCTACCAGATCCGTATTTTAAGAACTCAGCTGATGAATT 299
||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 641 AGAGGTGAAAGGTGAGCTTACCATACCAGATCCGTATTTTAAGAACTCAGCTGATCAATT 700
Query 300 CCATATAGATAGAGTCTTTCACTGTGACGGCCTATTGTTATGCACCTCCAAACTCGAACG 359
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 CAAGATAGATAAAGTCTTTCACTGTGACGGCCTATTGTTATGCACCTCCAAACTCGAACG 760
Query 360 TAGAATGGTTGTTTGGAACCCG-TTAACTGGTGAAACCAAGTGGATCCAAACCCACGAAG 418
|||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||
Sbjct 761 TAGAATGGTTGTTTGGAACCCGCTTA-CTGGTGAAACCAAGTGGATCCAAATCCGCGAAG 819
Query 419 AAGGCGACAAtttttttCTCGGATACTCCCAAGAAGACAAGAACATATCCTGCAAAAAGA 478
|| ||| || ||| |||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 820 AACGCGGCACCTTTGGTCTCGGATACTCCCAAGA---CAAGAACAAATCCTGCAATAAGA 876
Query 479 GCTACAAAATCATGGGGTTTTATCGTAGTGGTAGCAAAGTTTGGGAATACGATTTTAACT 538
|||||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 877 GCTACAAAATCATGGGCTTTTATCGTAGTGGTGGCCAAGTTTGGGAATACGATTTGAACT 936
Query 539 CTGATTCATGGAGGGTTCTTAATGGTATCCTTCCAAATTGGTACTTTG-ATAA-ATCTTA 596
|||||||||||||||||||| ||||||||| |||||| ||||||| || || || | |
Sbjct 937 CTGATTCATGGAGGGTTCTTGATGGTATCCGTCCAAAATGGTACTCTGGATTCGAT-T-A 994
Query 597 TAAGTGCGTGTCTTTGAAGGGAAATACTTACATGCTTGCTGGAGCTGTAACAGATATGGG 656
| |||||||||||||||||||||| |||||||||||||| || |||||||||| ||||
Sbjct 995 TCGGTGCGTGTCTTTGAAGGGAAATGCTTACATGCTTGCTAAAGATGTAACAGATGTGGG 1054
Query 657 CTTT-GACCTATCCTTGCAGAGTTACGATTTTTCAACAGAGAAATTTGCACCTGTGTCTC 715
||| | ||||||| ||| | || ||||||||||||||||||| || ||||||| |||
Sbjct 1055 CTTAAG-CCTATCCCTGCTCAAATATGATTTTTCAACAGAGAAATATGTACCTGTGACTC 1113
Query 716 TTCCTGTTCCCTCTCAGGCCCGTAGTTTGAATGGTGCTAATC 757
||||| |||||||||| ||||||||||| ||| |||||||
Sbjct 1114 TTCCTTTTCCCTCTCAAGCCCGTAGTTTTAATAACGCTAATC 1155
Score = 409 bits (221), Expect = 3e-113
Identities = 292/324 (90%), Gaps = 13/324 (4%)
Strand=Plus/Plus
Query 806 ATAAGAGATCCAAGGCTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAG 865
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1156 ATAAAAGATCCAAGGCTGAGATATGGGTGACAAACAAGATTGATGACACCACCAAAGGAG 1215
Query 866 CAGTTTCTTGGACCAAGGTCTTAGAATTGGATTTGAGCAGGGAGCTTCATGCCTT-GTTT 924
|||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 1216 CAGTTTCTTGGAGCAAGGTCTTAGCATTGGATTTGAGCAGGGAGCTTCA-AATTTCGTTT 1274
Query 925 ACTTCAAATTTCTTGGTAGACGAGGAGAAGAAAGTCTTCATTTGTTGTGTGAG-TTGGAA 983
| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 1275 AAGACAAATTTCTTGGTAGACGAGGAGAAGAAAGTCTTCATGTGTTGTGTGAGATTG-AG 1333
Query 984 GGAAGACGAAGACGAGAACAAGTCCAA-TA-AAG-TATACATTGTTGGGGAAGACAAT-A 1039
|||||||| |||||||||||||||||| || ||| |||||||||| ||||| || ||| |
Sbjct 1334 GGAAGACGGAGACGAGAACAAGTCCAAATACAAGGTATACATTGTCGGGGAGGATAATGA 1393
Query 1040 TAGTCAAAGAAATTGATTCTGGAG-AAGATGCAACCAGTGGATGT-GAGCCAACTATTCT 1097
||||||||||||||||||||||| || |||||||||||||| || | ||||||||||||
Sbjct 1394 -AGTCAAAGAAATTGATTCTGGAGTAA-ATGCAACCAGTGGAAGTTG-GCCAACTATTCT 1450
Query 1098 TAGTTTGTATGTTCCCAGTTTGGT 1121
||||||||||||||| ||||||||
Sbjct 1451 TAGTTTGTATGTTCCAAGTTTGGT 1474
Score = 128 bits (69), Expect = 9e-29
Identities = 115/137 (84%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 651 TATGGGCTTTGA-CCTATCCTTGCAGAGTTACGATTTTTCAACAGAGAAATTTGCACCTG 709
||||||| || | ||||||||||| | || ||||||||||||||||||| || |||||
Sbjct 203 TATGGGC-TTAAGCCTATCCTTGCTCAAATATGATTTTTCAACAGAGAAATATGAACCTG 261
Query 710 TGTCTCTTCCTGTTCCCTCTCAGGCCCGTAGTTTGAATGG-TGCTAATCGTCTTTCCGTT 768
|| |||||||| |||||||||| |||| | |||| | || ||| || |||||||||||
Sbjct 262 TGACTCTTCCTTTTCCCTCTCACGCCCATTGTTT-TAGGGAAGCTCATTGTCTTTCCGTT 320
Query 769 GTTAGAGGAGAGAAACT 785
|||||||||||||||||
Sbjct 321 GTTAGAGGAGAGAAACT 337
> Ahg952175 jgi|Araly1|952175|scaffold_43900002.1
Length=1157
Score = 126 bits (68), Expect = 3e-28
Identities = 119/143 (83%), Gaps = 5/143 (3%)
Strand=Plus/Plus
Query 758 GTCTTTCCGTTGTTAGAGGAGAGAAACTCGCCTTG-TTATATCGGCGAGATAAGAGATCC 816
|||||||||| ||||||| ||||||||| || || ||||| | | | | | | ||||
Sbjct 715 GTCTTTCCGTCGTTAGAGAAGAGAAACTTTCCGTGTTTATA-CAACCCGTTTATACATCC 773
Query 817 AAGGCTGAGATATGGGTGACAAATAAGATTGATGACACCACCG--AA-GGAGCAGTTTCT 873
||| |||||||||||||||| | ||||||||||||||||||| || ||||||||||||
Sbjct 774 AAGACTGAGATATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAGTTTCT 833
Query 874 TGGACCAAGGTCTTAGAATTGGA 896
||||||||||||||| ||||||
Sbjct 834 TGGACCAAGGTCTTATCATTGGA 856
> Ahg933278 jgi|Araly1|933278|scaffold_401266.1
Length=1114
Score = 87.9 bits (47), Expect = 1e-16
Identities = 117/148 (79%), Gaps = 16/148 (11%)
Strand=Plus/Plus
Query 759 TCTTTCCGTTGTTAGAGGA-GAGAAACTCGCCTTGTTA-TATCGGCGA-GATAAGAGATC 815
||| || ||||||||| || ||||||||| || ||||| || | || | || || | ||
Sbjct 740 TCTATCTGTTGTTAGA-GAGGAGAAACTCTCCGTGTTATTA-CAGC-ACGAAAATACAT- 795
Query 816 CAAGG-CTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAGCAGTTTCTT 874
||||| | || ||||||||||||||||||||||||||||||| ||| | || || |
Sbjct 796 CAAGGACAGAAATATGGGTGACAAATAAGATTGATGACACCA---AAGT-G--GTGTCGT 849
Query 875 GGACCAAGGTCTTAGA-ATTGGATTTGA 901
||| |||||||||| | | |||||||||
Sbjct 850 GGAGCAAGGTCTTA-ACAGTGGATTTGA 876
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 63.9 bits (34), Expect = 2e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 526 TACGATTTTAACTCTGATTCATGGAGGGTTCTTAATG 562
||||||||||||||||||||||||||||||||| |||
Sbjct 596 TACGATTTTAACTCTGATTCATGGAGGGTTCTTGATG 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5