BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18340.1 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003 691 0.0 Ahg929631 jgi|Araly1|929631|scaffold_302088.1 241 1e-62 Ahg925245 jgi|Araly1|925245|scaffold_200806.1 65.8 7e-10 > Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003 Length=966 Score = 691 bits (374), Expect = 0.0 Identities = 511/577 (89%), Gaps = 10/577 (2%) Strand=Plus/Plus Query 518 TTGATTCCCCT-GAATGGCCAACGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGA 576 |||||| |||| || ||||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 392 TTGATT-CCCTGGATTGGCCAATGCTGGCAGGTTTAGGTGAATATGTGTCCTTGAACGGA 450 Query 577 AATTTGTATTGGACTGCTTACAATGAAGATACTCGTGAGCATTTTCTTGGAAGCTTTGAT 636 ||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||| Sbjct 451 AATTTGTATTGGACTTCTTACAATGAAGAGACTCGTGAGTATTTTCTCGGAAGCTTTGAT 510 Query 637 TTCTCCACGGAAATATCCATGCACTTTTGTCTCCTTCCTTGTGCGAAGCATGTTTCTGGC 696 ||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||| Sbjct 511 TTCTCCACGGAAATATCGATGCGCTTTTGTCTCCCTCCTTGTGGGAAGCATGTTTCTGGC 570 Query 697 TTACAAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCGGTTTGCATTGTTAAAGCAA 756 | || | |||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 571 TCACTATATAAACTTGTCCTCACTGTATTTAAGGGAGATAGGTTTGCATTGTTAAAGCAA 630 Query 757 TCTCGTATATCAAGTAATACAGAGATTTGGGTAACAAAGGACAAGATTAACTCTAGTAAT 816 |||||||||||||| ||||||||| |||||||||||||||| ||||||||| | ||||| Sbjct 631 TCTCGTATATCAAGGAATACAGAGGTTTGGGTAACAAAGGAGAAGATTAACAATTGTAAT 690 Query 817 AA------CGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTGACTTTCCCTCGCTA 870 || ||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 691 AAGGATGACGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTAACTTTCCTTCGCTA 750 Query 871 TTCCATCAGCTTTCTGATATTAGTTACTTCATCCATGACATGACCCTTATCCTGTGCTGT 930 ||| ||||| |||||| |||||| |||||||| |||||| |||||||||| |||| ||| Sbjct 751 TTCAATCAGTTTTCTGGTATTAGATACTTCATTTATGACAAGACCCTTATCATGTGTTGT 810 Query 931 GACGACAATCAAACTGGAGTGGGTTGCATCTTTATTGCGAGGGGAGACTTGTGCAAGAAG 990 | || | ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 811 GGCGCCGATCAAACCGGAGTGGCTTGCATCTTTATTGCGAGGGGAGACATGTGCAAGAAG 870 Query 991 ATTCAAATAAATTATGTCTCTCTTGGGTTTTCTCAATGTGTCTATCTTCCAAGTTTGACC 1050 ||||||||| || || || | | |||||||| |||||||||||||||| ||||| | Sbjct 871 ATTCAAATAGGTTCTGGCTTTGATCATTTTTCTCACTGTGTCTATCTTCCAAATTTGATC 930 Query 1051 TCGGTTCCTT-TGGAATTCAGATCACTGCAAGTTTAG 1086 |||||||||| || |||||| |||| ||||||||||| Sbjct 931 TCGGTTCCTTCTG-AATTCAAATCAGTGCAAGTTTAG 966 > Ahg929631 jgi|Araly1|929631|scaffold_302088.1 Length=823 Score = 241 bits (130), Expect = 1e-62 Identities = 367/474 (77%), Gaps = 45/474 (9%) Strand=Plus/Plus Query 1 ATGGCGTCGGGGAAGCTTCCGTGGGAGTTGGAGGAAGAGATATTGTGTCGGCTTCCACCT 60 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 21 ATGGCGTCGGGGAAGCTTCCGTGGGATTTGGAGGAAGAGATACTGTGTCGGCTTCCACCT 80 Query 61 GGATCTCTTGTTCGGCTAAGATCCGTATGTAAACACTGGAACGATCTTTA-TAACGACAA 119 |||||||||||||| | ||||||||||||||||||||||||||||||| || ||| || Sbjct 81 CGATCTCTTGTTCGGTTCAGATCCGTATGTAAACACTGGAACGATCTTTTCTA-CGATAA 139 Query 120 -ATGGTTCATCAAGAAAAGC--TTGGGTTTTGCACGTCCCCAATTCATCATCCTGGCCGG 176 | | || |||| ||| || ||| || | | ||| ||||||||||| ||||| ||| Sbjct 140 GA-GCTTTGTCAA-AAA-GCACTTGAGTCGTACCCGTACCCAATTCATCTTCCTGACCGA 196 Query 177 ATTC-AAGAT--T-TATTCGATAGGA-ACC-AT-----CGGT-C--TGGACGT-CGTT-G 220 || | |||| | || ||||||| | | | || ||| | | || || ||| | Sbjct 197 AT-CGAAGAAGATGTACTCGATAG-ACATCGATATGGGCGGAACGATAGAGGTGCGTGAG 254 Query 221 --ATCCGAAGAT----A--G--AGGCTGA-GAAGTGGGCATTTACCAGGATCACGGCTTG 269 |||| | ||| | | || || | |||| | |||||| | |||| |||||| Sbjct 255 CTATCCTATGATTTTCATTGTCAGCCT-ATGAAGACGAAATTTACAACTATCATGGCTTG 313 Query 270 CAATGGATTATTGTTTCGTGACTTTTGGAACCAAGGGGTTACCATTTGGAATCCATGGTT 329 | |||| |||||||||||||| ||||||| ||||| ||| | |||||||| | ||||| Sbjct 314 CGATGGGTTATTGTTTCGTGAAATTTGGAAACAAGGTGTTGCGGTTTGGAATTCGTGGTT 373 Query 330 AAGACAAGTTGGGTGGATTGAGTATAAGGAGGACAAAGATTTCCGT-TTTTGCGGTATAG 388 ||||| ||||| ||||| ||||| | |||| |||| ||||| | |||| ||| ||| Sbjct 374 GAGACAGGTTGGATGGATCGAGTAC--G-AGGATAAAGGTTTCCATATTTTT-GGTGTAG 429 Query 389 GATACGAT-GCTGGTAAACCCGAAAAGGGTTACAAGATCTTTGGGTATTTTAAT 441 |||||||| | || || |||||||||||||||||||||||| |||||| ||||| Sbjct 430 GATACGATAGTTG-TAGACCCGAAAAGGGTTACAAGATCTTGGGGTATATTAAT 482 > Ahg925245 jgi|Araly1|925245|scaffold_200806.1 Length=826 Score = 65.8 bits (35), Expect = 7e-10 Identities = 42/45 (93%), Gaps = 1/45 (2%) Strand=Plus/Plus Query 557 AAT-ATGTGTCCTTGAATGGAAATTTGTATTGGACTGCTTACAAT 600 ||| ||||||||||||||||||||||||||||| | ||||||||| Sbjct 289 AATAATGTGTCCTTGAATGGAAATTTGTATTGGCCAGCTTACAAT 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5