BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18340.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003 691 0.0
Ahg929631 jgi|Araly1|929631|scaffold_302088.1 241 1e-62
Ahg925245 jgi|Araly1|925245|scaffold_200806.1 65.8 7e-10
> Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003
Length=966
Score = 691 bits (374), Expect = 0.0
Identities = 511/577 (89%), Gaps = 10/577 (2%)
Strand=Plus/Plus
Query 518 TTGATTCCCCT-GAATGGCCAACGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGA 576
|||||| |||| || ||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 392 TTGATT-CCCTGGATTGGCCAATGCTGGCAGGTTTAGGTGAATATGTGTCCTTGAACGGA 450
Query 577 AATTTGTATTGGACTGCTTACAATGAAGATACTCGTGAGCATTTTCTTGGAAGCTTTGAT 636
||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 451 AATTTGTATTGGACTTCTTACAATGAAGAGACTCGTGAGTATTTTCTCGGAAGCTTTGAT 510
Query 637 TTCTCCACGGAAATATCCATGCACTTTTGTCTCCTTCCTTGTGCGAAGCATGTTTCTGGC 696
||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 511 TTCTCCACGGAAATATCGATGCGCTTTTGTCTCCCTCCTTGTGGGAAGCATGTTTCTGGC 570
Query 697 TTACAAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCGGTTTGCATTGTTAAAGCAA 756
| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 571 TCACTATATAAACTTGTCCTCACTGTATTTAAGGGAGATAGGTTTGCATTGTTAAAGCAA 630
Query 757 TCTCGTATATCAAGTAATACAGAGATTTGGGTAACAAAGGACAAGATTAACTCTAGTAAT 816
|||||||||||||| ||||||||| |||||||||||||||| ||||||||| | |||||
Sbjct 631 TCTCGTATATCAAGGAATACAGAGGTTTGGGTAACAAAGGAGAAGATTAACAATTGTAAT 690
Query 817 AA------CGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTGACTTTCCCTCGCTA 870
|| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 691 AAGGATGACGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTAACTTTCCTTCGCTA 750
Query 871 TTCCATCAGCTTTCTGATATTAGTTACTTCATCCATGACATGACCCTTATCCTGTGCTGT 930
||| ||||| |||||| |||||| |||||||| |||||| |||||||||| |||| |||
Sbjct 751 TTCAATCAGTTTTCTGGTATTAGATACTTCATTTATGACAAGACCCTTATCATGTGTTGT 810
Query 931 GACGACAATCAAACTGGAGTGGGTTGCATCTTTATTGCGAGGGGAGACTTGTGCAAGAAG 990
| || | ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 811 GGCGCCGATCAAACCGGAGTGGCTTGCATCTTTATTGCGAGGGGAGACATGTGCAAGAAG 870
Query 991 ATTCAAATAAATTATGTCTCTCTTGGGTTTTCTCAATGTGTCTATCTTCCAAGTTTGACC 1050
||||||||| || || || | | |||||||| |||||||||||||||| ||||| |
Sbjct 871 ATTCAAATAGGTTCTGGCTTTGATCATTTTTCTCACTGTGTCTATCTTCCAAATTTGATC 930
Query 1051 TCGGTTCCTT-TGGAATTCAGATCACTGCAAGTTTAG 1086
|||||||||| || |||||| |||| |||||||||||
Sbjct 931 TCGGTTCCTTCTG-AATTCAAATCAGTGCAAGTTTAG 966
> Ahg929631 jgi|Araly1|929631|scaffold_302088.1
Length=823
Score = 241 bits (130), Expect = 1e-62
Identities = 367/474 (77%), Gaps = 45/474 (9%)
Strand=Plus/Plus
Query 1 ATGGCGTCGGGGAAGCTTCCGTGGGAGTTGGAGGAAGAGATATTGTGTCGGCTTCCACCT 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 21 ATGGCGTCGGGGAAGCTTCCGTGGGATTTGGAGGAAGAGATACTGTGTCGGCTTCCACCT 80
Query 61 GGATCTCTTGTTCGGCTAAGATCCGTATGTAAACACTGGAACGATCTTTA-TAACGACAA 119
|||||||||||||| | ||||||||||||||||||||||||||||||| || ||| ||
Sbjct 81 CGATCTCTTGTTCGGTTCAGATCCGTATGTAAACACTGGAACGATCTTTTCTA-CGATAA 139
Query 120 -ATGGTTCATCAAGAAAAGC--TTGGGTTTTGCACGTCCCCAATTCATCATCCTGGCCGG 176
| | || |||| ||| || ||| || | | ||| ||||||||||| ||||| |||
Sbjct 140 GA-GCTTTGTCAA-AAA-GCACTTGAGTCGTACCCGTACCCAATTCATCTTCCTGACCGA 196
Query 177 ATTC-AAGAT--T-TATTCGATAGGA-ACC-AT-----CGGT-C--TGGACGT-CGTT-G 220
|| | |||| | || ||||||| | | | || ||| | | || || ||| |
Sbjct 197 AT-CGAAGAAGATGTACTCGATAG-ACATCGATATGGGCGGAACGATAGAGGTGCGTGAG 254
Query 221 --ATCCGAAGAT----A--G--AGGCTGA-GAAGTGGGCATTTACCAGGATCACGGCTTG 269
|||| | ||| | | || || | |||| | |||||| | |||| ||||||
Sbjct 255 CTATCCTATGATTTTCATTGTCAGCCT-ATGAAGACGAAATTTACAACTATCATGGCTTG 313
Query 270 CAATGGATTATTGTTTCGTGACTTTTGGAACCAAGGGGTTACCATTTGGAATCCATGGTT 329
| |||| |||||||||||||| ||||||| ||||| ||| | |||||||| | |||||
Sbjct 314 CGATGGGTTATTGTTTCGTGAAATTTGGAAACAAGGTGTTGCGGTTTGGAATTCGTGGTT 373
Query 330 AAGACAAGTTGGGTGGATTGAGTATAAGGAGGACAAAGATTTCCGT-TTTTGCGGTATAG 388
||||| ||||| ||||| ||||| | |||| |||| ||||| | |||| ||| |||
Sbjct 374 GAGACAGGTTGGATGGATCGAGTAC--G-AGGATAAAGGTTTCCATATTTTT-GGTGTAG 429
Query 389 GATACGAT-GCTGGTAAACCCGAAAAGGGTTACAAGATCTTTGGGTATTTTAAT 441
|||||||| | || || |||||||||||||||||||||||| |||||| |||||
Sbjct 430 GATACGATAGTTG-TAGACCCGAAAAGGGTTACAAGATCTTGGGGTATATTAAT 482
> Ahg925245 jgi|Araly1|925245|scaffold_200806.1
Length=826
Score = 65.8 bits (35), Expect = 7e-10
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand=Plus/Plus
Query 557 AAT-ATGTGTCCTTGAATGGAAATTTGTATTGGACTGCTTACAAT 600
||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 289 AATAATGTGTCCTTGAATGGAAATTTGTATTGGCCAGCTTACAAT 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5