BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18350.1
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929713 jgi|Araly1|929713|scaffold_302170.1 3408 0.0
Ahg474021 jgi|Araly1|474021|fgenesh2_kg.1__3975__AT1G48840.1 1690 0.0
Ahg952174 jgi|Araly1|952174|scaffold_43900001.1 172 9e-42
> Ahg929713 jgi|Araly1|929713|scaffold_302170.1
Length=2119
Score = 3408 bits (1845), Expect = 0.0
Identities = 2019/2105 (96%), Gaps = 3/2105 (0%)
Strand=Plus/Plus
Query 321 GGTATGTCGAGCAAAACCCGGAATATGCTTGAAGGTTTGGTTAGAGATACTTCTTTTAAA 380
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 18 GGTATGTCGAGTAAAACCCGGAATATGCTTGAAGGATTGGTTAAAGATACTTCTTTTAAA 77
Query 381 TGGTTGCTCGGGAAACAAAGTTCTTTCGATGAAGAAATCGAGGAAATGGGAAGATCTCCA 440
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 78 TGGTTGCTTGGGAAACAAAGTTCTTTCGATGAAGAAATCGAGGAAATGGGAAGATCCCCA 137
Query 441 TCAGCTGGGACTAATTGGATACCTGAGCTTTCTCCTATTGCCAATGTGGTTGTCCGCAGG 500
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 138 TCTGCTGGGACTAATTGGATACCTGAGCTTTCTCCTATCGCCAATGTGGTTGTCCGCAGG 197
Query 501 TGTTCAAAAATACTCGGTGTTTCTGCAAACGAGCTACGAGATAGTTTCAAACAAGAGGCA 560
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 198 TGTTCAAAAATACTCGGTGTTTCTGCAAACGAGCTGCGAGATAGTTTCAAACAAGAAGCA 257
Query 561 TTTGAATCTCTCAAGCAGCCTTCTCTATTTCCAAGGAACTTTCTAGAGTACTGTTGTTTC 620
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 258 TTTGAATCTCTCAAGCAGCCTTCTCTATTTGCAAGGAACTTTTTAGAGTACTGTTGTTTC 317
Query 621 AGAGCACTTTCACTGTCTGTTGGAGTAACAGGTCATCTAGCCGATAAAAAGTTTCGGCGC 680
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 318 AGGGCACTTTCACTGTCTGTTGGAGTAACAGGGCATCTAGCCGATAAAAAGTTTCGGCGC 377
Query 681 TTAACATTTGACATGATGGTTGTCTGGGAAGTCCCAGCTGTTGCTAGCCAGGCTTTACTC 740
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 378 TTAACATTTGACATGATGGTTGTCTGGGAAGTCCCAGCTGTTTCTAGCCAGGCTTTACTC 437
Query 741 AGTGTAGAAGAAGATGCAACAGTGAGTTTAGAAGCCTTCTCACGGATCGCACCAGCAGTT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGTGTAGAAGAAGATGCAACAGTGAGTTTAGAAGCCTTCTCACGGATCGCACCAGCAGTT 497
Query 801 CCAATAATAGCTGATGTGATTATATGTGATAATCTGTTTCAAATGCTTACTTCATCAACG 860
|| ||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||
Sbjct 498 CCTATAATAGCTGATGTGATCATATGTGAAAATCTGTTTAAAATGCTTACTTCAGCAACG 557
Query 861 GGTGGTCGGCTTCAGTTCTCTGTTTATGACAAGTATTTACATGGCCTGGAGAGAGCAATA 920
|||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||||
Sbjct 558 GGTGGTCGGCTTCAGTTCTCCGTTTATGACAAGTATTTATATGGACTTGAGAGAGCAATA 617
Query 921 AAGAAGATGAGGACTCAGTCCGAATCATCTTTGCTTTCTGGTGTTCGATCAAAAAGAGAA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AAGAAGATGAGGACTCAGTCCGAATCATCTTTGCTTTCTGGTGTTCGATCAAAAAGAGAA 677
Query 981 AAGATTCTGGAAATAGACGGGACAGTTACTACCCAACCAGTTCTTGAACATGTCGGAATA 1040
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 678 AAGATTCTGGAAATAGACGGGACAGTTACTACCCAACCCGTTCTTGAACATATTGGAATA 737
Query 1041 TCAACGTGGCCAGGTCGCTTAATCCTGACAGACCATTCCCTATATTTTGAGGCCTTAAAG 1100
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 738 TCAACGTGGCCAGGTCGCTTAATCCTGACAGACCATTCACTATATTTTGAGGCCTTAAAG 797
Query 1101 GTCGTGTCTTATGACACACCAAAGCGATATCACCTATCTGAAGATCTAAAGCAAATAATT 1160
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 798 GTCGTGTCTTATGACACACCAAAGCGATATGACCTATCTGAAGATCTAAAGCAAATAATT 857
Query 1161 AAACCTGAGTTAACTGGTCCTTGGGGCACTCGGCTTTTCGACAAGGCCGTTTCTTACCAG 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 858 AAACCTGAGTTAACTGGTCCTTGGGGCACTCGGCTTTTCGACAAGGCCGTTTCTTACAAG 917
Query 1221 TCTATATCTCTATCAGAACCAGTGGTAATGGAATTCCCAGAGCTTAAAGGCCACACACGC 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCTATATCTCTATCAGAACCAGTGGTAATGGAATTCCCAGAGCTTAAAGGCCACACACGC 977
Query 1281 CGTGATTACTGGCTCACTATTATACAAGAGGTATTATATGTTCATAGATACATAAACAAG 1340
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 978 CGTGATTACTGGCTCACTATTATACAAGAAGTATTATACGTTCACAGATACATAAACAAG 1037
Query 1341 TACAAGATCACCGGTTTGGCAAGAGACGAAGCACTTTCAAAGGCTGTCCTTGGCGTTATG 1400
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1038 TACAAGATCACCGGTTTGGCGAGAGACGAAGCACTTTCAAAGGCTGTCCTTGGTGTTATA 1097
Query 1401 CGTGTCCAAGCTCTTCAAGAACTCAATTTGACAAACGCAATGCGGTACGAAAATCTTCTC 1460
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1098 CGTGTGCAAGCTCTTCAAGAACTCAGTTTGACAAACGCAATGCGGTACGAAAATATTCTC 1157
Query 1461 CCGTTCAATCTCTGCGATCAGCTTCCCGGTGGAGATCTGATTCTTGAGACGCTTGCAGAG 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 CCGTTCAATCTCTGCGATCAGCTTCCCGGTGGAGATCTGATTCTTGAGACGCTTGCAGAG 1217
Query 1521 ATGTCTACCTCAAGAGAGCTCCATCGATCAAATAAATCCAAAGATACAGGGACATTACAT 1580
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ATGTCTACTTCAAGAGAGCTCCATCGATCAAATAAATCCAAAGATACAGGGACATTACAT 1277
Query 1581 TCCTCAGCTTCTGATATGGTTTCGCAGCTGGGTTCTGTGTTTGGAGGGTCAAGTCCTAGG 1640
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1278 TCCTCAGCTTCTGATATGGTTTCGCAGCTGGGTTCTGTATTTGGAGGGTCAAGTCCTAGG 1337
Query 1641 AGCAGGAGGGAGACGAGTAGTCTTGTGGTAGGTGAAGTAGTGGTTGGAGATGTGAATCCA 1700
|||||||| || |||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1338 AGCAGGAGAGACACGAATAATCTTGTGGTAGGTGAAGTAGTGGTTGGGGATGTGAATCCA 1397
Query 1701 TTAGAGAGAGCAGTGAAGGAGTCGCGCAAGAAATACGAGAAAGTAGTTCTAGCGCAAGAG 1760
|||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct 1398 TTAGAGAGAGCAGTGAAGGAGTCGCGTAAGAACTACGAGAAAGTAGTGCTTGCGCAAGAG 1457
Query 1761 ACGATTAATGGGGTGAAAATGGGTGGCATTGACACCAACTTAGCCGTGATGAAGGAACTG 1820
|| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1458 ACAATTAATGGAGTCAAAATGGAAGGCATTGACACCAACTTAGCCGTGATGAAGGAACTG 1517
Query 1821 ATGCTTCCAATAATGGAAACCTGGAACTTAATTCTATCTGTGGTGTATTGGGATGATCCT 1880
|||||||| || |||||||| |||||| ||| | || |||||||||||||||||||||
Sbjct 1518 ATGCTTCCGATTATGGAAACAGGGAACTGGATTGTGTCGGTGGTGTATTGGGATGATCCT 1577
Query 1881 ACAAAGTCTAGTGTTTTCTGTCTCTTGACCACTTTCATAATTTGGAGGGGATGGCTTGTT 1940
| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1578 ATGAAGTCTAGTGTTTTCTGTCTCGTCTCCACTTTCATAATTTGGAGGGGATGGCTTGTT 1637
Query 1941 TATGTCTTTGCTCTTGCGTCTCTCTTCTCTGCCATCTTCATGGTTCTCACAAGATGTTTC 2000
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1638 TATGTCTTTGCTCTTGCATCTCTCTTCTCTGCAATCTTCATGGTTCTCACAAGATGTTTC 1697
Query 2001 AGCAGAGAAAAGCTCATGATCGAGCTGAAAGTAACTGCTCCTCCTCCAATGAACACAATG 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 AGCAGAGAAAAGCTCATGATCGAGCTGAAAGTAACTGCTCCTCCTCCAATGAACACAATG 1757
Query 2061 GAACAGCTTTTGGCAGTCCAGAACGGGATCTCGGAGCTCGAACAGAACATTCAAGACGCA 2120
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1758 GAACAACTTTTGGCTGTCCAGAATGGGATCTCGGAGCTCGAACAGAACATTCAAGACGCA 1817
Query 2121 AACATCGTTCTTCTCAAGTTCCGAGCTTTATTATTCTCGCTTTTCCCTCAGGCGAGCCAG 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 AACATCGTTCTTCTCAAGTTCCGAGCTTTATTATTCTCGCTTTTCCCTCAGGCGAGCCAG 1877
Query 2181 AAGTTTGCGATTGCGATTGTGGTCGCAGCGACGATGATGGCCTTTGTTCCGGGACGCTAC 2240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1878 AAGTTTGCGATTGCGATTGTGGTGGCAGCGACGATGATGGCCTTTGTTCCGGGACGCTAC 1937
Query 2241 TTGCTTTCGGTTGTATTTGTTGAGCTTTTCACAAGATACTCGCCACCAAGGAGAGCTAGC 2300
||||||||||| || |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1938 TTGCTTTCGGTAGTGTTTGTTGAGCTTTTCACAAGATACTCACCACCACGGAGAGCTAGC 1997
Query 2301 ACGGAACGGTTAATAAGGCGGTTGAGAGAGTGGTGGTTTAGTATACCAGCGGCTCCAGTG 2360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 ACGGAACGGTTGATAAGGCGGTTGAGAGAGTGGTGGTTTAGTATACCAGCGGCTCCAGTG 2057
Query 2361 GTCCTTCTACATGACAAGAACAATAAGAAGAAGAAGAACTAATTGGAGAGCGTCTATAGT 2420
||||| | |||||||||||||||||| ||||||||||||| | ||||| ||||||||||
Sbjct 2058 GTCCTCCAACATGACAAGAACAATAATAAGAAGAAGAACTGA--GGAGA-CGTCTATAGT 2114
Query 2421 TGCCA 2425
|||||
Sbjct 2115 TGCCA 2119
> Ahg474021 jgi|Araly1|474021|fgenesh2_kg.1__3975__AT1G48840.1
Length=2402
Score = 1690 bits (915), Expect = 0.0
Identities = 1733/2118 (82%), Gaps = 96/2118 (5%)
Strand=Plus/Plus
Query 323 TATGTCGAGCAAAACCCGGAATATGCTT-GAAGGTTTGGTTAGAGATACTTCTTTTAAAT 381
||||||||||| ||| ||| || | || |||||| |||||| ||||| ||| ||||||
Sbjct 187 TATGTCGAGCAGAACTCGGGATGT-TTTAGAAGGTCTGGTTAAAGATAGTTCACTTAAAT 245
Query 382 GGTTGCTCGGGAAACAAAGTTCTTTCGATGAAGAAATCGAGGA-AATGGGAAGATCTCCA 440
||||||| ||||| ||||||||||||||||||||||||||||| | || ||| ||||||
Sbjct 246 GGTTGCTTGGGAAGCAAAGTTCTTTCGATGAAGAAATCGAGGAGATTGAGAA-TTCTCCA 304
Query 441 TCAGCTGG-GACTAATTGGATACCTGAGCTTTCTCCTA-TTGCCAATGTGGTTGTCCGCA 498
|| ||||| | | || |||||||||||||||||||| | | || ||||| || | ||||
Sbjct 305 TCTGCTGGTG-CCAACTGGATACCTGAGCTTTCTCC-AGTGGCAAATGTTGTCATTCGCA 362
Query 499 GGTGTTCAAAAATACTCGGTGTTTCTGCAAACGAGCTACGAGATAGTTTCAAACAAGAGG 558
|||||||||||||||| |||||||| | || ||||||| ||||||||||||||||||||
Sbjct 363 GGTGTTCAAAAATACTTGGTGTTTCAGTAAGTGAGCTACAAGATAGTTTCAAACAAGAGG 422
Query 559 CATTTGAATCTCTCAAGCAGCCTTCTCTATTTCCAAGGAACTTTCTAGAGTACTGTTGTT 618
| | ||||||| | ||||||||||| | |||||||| ||||||||||||||||| ||||
Sbjct 423 CGTCTGAATCTGTTAAGCAGCCTTCAATGTTTCCAAGAAACTTTCTAGAGTACTGCTGTT 482
Query 619 TCAGAGCACTTTCACTGTCTGTTGGAGTAACAGGTCATCT-AGCCGATAAAAAGTTTCGG 677
|||| |||||| |||| ||||||||||||||||||||||| || ||||||||| |||||
Sbjct 483 TCAGGGCACTTGCACTCTCTGTTGGAGTAACAGGTCATCTAAG-CGATAAAAACTTTCGA 541
Query 678 CGCTTAACATTTGACATGATGGTTGTC-TGGGAAGTCCCAGCTGTTGCTAGCCAGGCTTT 736
|| ||||| ||||| |||||||||| | ||||| || || | | |||||||||| | ||
Sbjct 542 CGTTTAACTTTTGATATGATGGTTG-CTTGGGAGGTTCCTTCCGCTGCTAGCCAGTCATT 600
Query 737 ACTCAGTGTAGAAGAAGATGCAACAG-TGAGTTTAGAAGCCTTCTCACGGATCGCACCAG 795
||||||||| || |||||| |||| | || |||||||||||||||||||||| || ||||
Sbjct 601 ACTCAGTGTTGATGAAGATCCAACCGTTG-GTTTAGAAGCCTTCTCACGGATTGCTCCAG 659
Query 796 CAGTTCCAATAATAGCTGATGTGATTATATGTGATAATCTGTTTCAAATGCTTAC-T-T- 852
||||||| ||||| ||||||||||| |||||||| ||| ||||| ||||| || | |
Sbjct 660 CAGTTCCTATAATTGCTGATGTGATCATATGTGAGAATTTGTTTGGGATGCTGACTTCTG 719
Query 853 CATC-AACGGGTGGTCGGCTTCAGTTCTCTGTTTATGACAAGTATTTACATGGCCTGGAG 911
| || ||| ||| |||||||||||| | |||||||||||||||||| |||| || ||
Sbjct 720 CCTCAAAC-AGTGTTCGGCTTCAGTTTTATGTTTATGACAAGTATTTGTATGGACTTGAA 778
Query 912 AGAGCAATAAAGAAGATG-AGGACTCAGTCCGAATCATCTTTGCTTTCTGGTGTTCGATC 970
|||||||||||||||||| || || |||||||| |||||||| ||||| |||||||||||
Sbjct 779 AGAGCAATAAAGAAGATGAAGAAC-CAGTCCGAGTCATCTTTACTTTCCGGTGTTCGATC 837
Query 971 AAAAAGAGAAAAGATTCTGGAAATAGACGGGACAGTTACTACCCAACCAGTTCTTGAACA 1030
|||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 838 AAAAGGAGAAAAGATTCTTGAGGTCGACGGGACAGTTACTACCCAACCAGTTCTTGAACA 897
Query 1031 TGTCGGAATATCAACGTGGCCAGGTCGCTTAATCCTGACAGACCATTCCCTATATTTTGA 1090
| | ||||| || || |||||||||||||| || ||||| || ||||| || ||||||||
Sbjct 898 TATTGGAATCTCTACATGGCCAGGTCGCTTGATTCTGACTGATCATTCACTCTATTTTGA 957
Query 1091 GGCCT-TAAAGGTCGTGTC-TTATGACACACCAAAGCGATATCA-CCTATCTGAAGATCT 1147
||| | ||||||| || || || |||||||||||||| ||| | ||| |||||||||||
Sbjct 958 GGC-TATAAAGGTTGTTTCGTTC-GACACACCAAAGCGTTAT-AGCCTCTCTGAAGATCT 1014
Query 1148 -AAAGCAAATAATTAAACCTGAGTTAACTGGTCCTTGGGGCACTCGGCTTTTCGACAAGG 1206
||| ||| | ||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 1015 GAAA-CAAGTCATTAAACCTGAGTTAACCGGTCCTTGGGGCACTCGGCTGTTCGATAAGG 1073
Query 1207 CCGTTTCTTACCAGTCTATATCTCTATCAGAACCAGTGGTAATGGAATTCCCAGAGCTTA 1266
| ||||||||| ||||||| || ||| |||||||||| |||||||| ||||| ||||| |
Sbjct 1074 CTGTTTCTTACAAGTCTATTTCCCTACCAGAACCAGTAGTAATGGAGTTCCCCGAGCTCA 1133
Query 1267 AAGGCCACACACGCCGTGATTACTGGCTCACTATTATACAAGAGGTATTATATGTTCATA 1326
| ||||||||| | || |||||||||||| | || || | ||| || ||||||||||| |
Sbjct 1134 AGGGCCACACAAGACGAGATTACTGGCTCGCAATAATCCTAGAAGTGTTATATGTTCACA 1193
Query 1327 GATACATAAACAAGTACAAGATCA-C-CG-GTTTGGC-AAGAGACGAAGC-ACTTTCAAA 1381
|||||||||| |||| |||||||| | || || |||| || ||| ||||| | | |||||
Sbjct 1194 GATACATAAAGAAGTTCAAGATCAACACGAGTGTGGCGAA-AGATGAAGCTA-TCTCAAA 1251
Query 1382 GGCTGTCCTTGGCGTTATGCGTGTCCAAGCTC-TTCAAGAACTCAATTTGACAAACGCAA 1440
||||| || ||| || | || || ||||| | ||||||||||| ||| |||||| |
Sbjct 1252 AGCTGTACTCGGCATTTTACGCGTGCAAGC-CATTCAAGAACTCGGTTTAACAAACCCTG 1310
Query 1441 TGCGGTACGAAAATCTTCTCCCGTTCAATCTCTGCGATCAGCTTCCCGGTGGAGATC-TG 1499
||||||| | ||||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 1311 TGCGGTATGGGAATCTTCTCCCGTTCAATCTCTGTGATCAGCTTCCTGGTGGAGACCGT- 1369
Query 1500 ATTCTTGAGACGCTTGCAGAGATGTCTACCTCAAGAGAGCTCCATCG-ATCAAATAAATC 1558
||||| ||||||||||||||||||||||| || |||| ||| | || | |||| ||| |
Sbjct 1370 ATTCTGGAGACGCTTGCAGAGATGTCTACTTCTAGAGTGCTTGACCGGA-CAAACAAAGC 1428
Query 1559 CAAAGATACAGGGACATTACATTC---CTCAGCTTCTGATATGGTTTCGCAGCTGGGTTC 1615
|||||| | |||||||| || || ||| || || |||||||||||||| ||||||
Sbjct 1429 CAAAGA-A--GGGACATTGCACTCGATCTCGGCCTCGGATATGGTTTCGCAATTGGGTT- 1484
Query 1616 TG-TGTTTGGAGGGTCAAGTCCTAGGAGCAGGAGGGAGACGAGTAGTCTTGTGGTAGGTG 1674
|| ||||||||| ||||||| | | || || ||| |||||||||||||||||||
Sbjct 1485 TGGTGTTTGGAGCAACAAGTCC-A--A--AG-AGT-AGA--AGTAGTCTTGTGGTAGGTG 1535
Query 1675 AAGT-AGTGGTTGGAGATGTGAATCCATTAGAGAGAGCAGTGAAGGAGTCGCGCAAGAAA 1733
| || | |||||||||||||||||||||| |||| |||||| ||| | || | |||||
Sbjct 1536 AGGTGA-TGGTTGGAGATGTGAATCCATTGGAGAAAGCAGTTAAGCAATCAAGAAAGAAC 1594
Query 1734 TACGAGAAAGTAGTTCTAGCGCAAGAGACGATTAATGGGGTGAAAATGGGTGGCATTGAC 1793
|| |||||||| ||||| || ||||||||| ||||||| || ||| | | ||| ||||||
Sbjct 1595 TATGAGAAAGTGGTTCTTGCACAAGAGACGGTTAATGGAGTTAAAGTTGATGGAATTGAC 1654
Query 1794 ACCAACT-TAGCCGTGATGAAGGAACTGATGCTTCCAATAATGGAAACCTGGAACTTAA- 1851
||||| | |||| ||||||||||||||| | ||||| | || |||| | |||| ||
Sbjct 1655 ACCAA-TGTAGCAGTGATGAAGGAACTGCTACTTCCGGTTATAGAAATCGGGAA-TTGGC 1712
Query 1852 TTCTATCTGTG-G-TGTATTGGGATGATCC-TACAAAGTCTAGTGTTTTCTGTCTCTTGA 1908
|| | || || | | |||||||| ||||| | || |||| |||||||||||||||
Sbjct 1713 TTTTGTC-GTTAGCT-TATTGGGAGGATCCATTGAA-GTCTTTTGTTTTCTGTCTCTTCT 1769
Query 1909 CCACTTTCATAATTTGGAGGGGATGGCTTGTTTATGTCTTTGCTCTTGCGTCTCTCTTCT 1968
| ||||||||||||| ||||| ||| ||| ||||| ||||| ||||||||||||| |
Sbjct 1770 CAACTTTCATAATTTACAGGGGGTGGATTGGCTATGTTTTTGCGATTGCGTCTCTCTT-T 1828
Query 1969 CT-GCCA-TCTTCATGGTTCTCACAAGATGTTTCAGCA---GAGA-AAAGCTCATGATCG 2022
| || | |||||||||||||| |||| |||||||| |||| |||| | |||||||
Sbjct 1829 ATAGCGGGT-TTCATGGTTCTCACGAGATATTTCAGCAATAGAGAGAAAG-TAATGATCG 1886
Query 2023 AGCTGAAAGTAACT-GCTCCTCCTCCAATGAACACAATGGAACAGCTTTTGGCAGTCCAG 2081
|||||||||| | | || || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1887 AGCTGAAAGTTA-TAGCGCCGCCTCCTATGAACACAATGGAACAGCTTTTAGCAGTCCAA 1945
Query 2082 AACGGGATCTCGGAGCTCGAACAGA-ACATTCAAGACGCAAACATCGTTCTTCTCAAGTT 2140
|||| ||| || ||||||||||| | || |||||||||||||| ||||| ||||||||
Sbjct 1946 AACGCGATTTCACAGCTCGAACAGTTA-ATCCAAGACGCAAACATTGTTCTCCTCAAGTT 2004
Query 2141 CCGAGCTTTATTATTCTCGCTTTTCCCTCAGGCGAGCCAGAAGTTTGCGATTGCGATTGT 2200
|||||||||| || |||| |||||||| |||||||| ||||||||||| ||||||||||
Sbjct 2005 CCGAGCTTTACTACTCTCTCTTTTCCCACAGGCGAGTGAGAAGTTTGCGGTTGCGATTGT 2064
Query 2201 GGTCGCAGCGACGATGATGGCCTTTGTTCCG-GGA-CGCTACTTGCTT-TCGGTTGTATT 2257
| |||| ||| |||||||||| || || || ||| | | || | || | ||| || ||
Sbjct 2065 GATCGCTGCGTCGATGATGGCATTAGTGCCTTGGAACAAT-CT-GATTCT-GGTGGTGTT 2121
Query 2258 TGTTGAGCTTTTCACAAGATACTCGCCACCAAGGAGAGCTAGCACGGAACGGTTAATAAG 2317
| ||||||| |||||||||||||||||||| | ||||| |||||||||||||| || |
Sbjct 2122 TCTTGAGCTGTTCACAAGATACTCGCCACCGCGTAGAGCAAGCACGGAACGGTTGATGCG 2181
Query 2318 GCGG-TTGAGAGAGTGGTGGTTTAGTATACCAGCGGCTCCAGTGGTCCTTCTACATGA-C 2375
|||| || | |||||||||||| || || || || ||||| || || ||| ||| || |
Sbjct 2182 GCGGCTTAA-AGAGTGGTGGTTCAGCATTCCGGCTGCTCCGGTTGTTCTTGAACA-GAGC 2239
Query 2376 AA-GAACAATAAGAAGAA 2392
|| || | |||| |||||
Sbjct 2240 AAAGA-CGATAACAAGAA 2256
> Ahg952174 jgi|Araly1|952174|scaffold_43900001.1
Length=249
Score = 172 bits (93), Expect = 9e-42
Identities = 93/93 (100%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 650 AGGTCATCTAGCCGATAAAAAGTTTCGGCGCTTAACATTTGACATGATGGTTGTCTGGGA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGTCATCTAGCCGATAAAAAGTTTCGGCGCTTAACATTTGACATGATGGTTGTCTGGGA 60
Query 710 AGTCCCAGCTGTTGCTAGCCAGGCTTTACTCAG 742
|||||||||||||||||||||||||||||||||
Sbjct 61 AGTCCCAGCTGTTGCTAGCCAGGCTTTACTCAG 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5