BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18360.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479336 jgi|Araly1|479336|fgenesh2_kg.3__2037__AT3G18360.1 1026 0.0
> Ahg479336 jgi|Araly1|479336|fgenesh2_kg.3__2037__AT3G18360.1
Length=831
Score = 1026 bits (555), Expect = 0.0
Identities = 749/833 (90%), Gaps = 51/833 (6%)
Strand=Plus/Plus
Query 53 accatcaccatccaAAGAGAGAACCCAATGAAAACAACTCCGGAATCTTATACACTCCCT 112
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 23 ACCATCACCATCCAAAGAGAGAACCAAATGAAAACAACTCCGGAATCTTATACACTCCCT 82
Query 113 CACC-T-----TCACCGTCACCGCCAACTTTAAAAGTCAACAAAGACTCTCACGTTATTA 166
|||| | |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 83 CACCGTCACCGTCACCGTCACCGCCGACGTTAAAAGTCAACAAAGACTCTCACGTTATTA 142
Query 167 AAAAACCACCGTCTCCGTCTTCTTTCTCCTCCGCGGCTAAGCCTCGTCACCCGGTGATCA 226
||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 143 AAAAACCTCCGTCTCCGTCGTCTTCCTCCTCCGCGGCGAAGCCTCGTCACCCGGTGATCA 202
Query 227 TTTACACACACACTCCAAGAATCATACACACTAATCCTAAAGATTTCATGGCTCTTGTTC 286
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TTTACACACACACTCCCAGAATCATACACACTAATCCTAAAGATTTCATGGCTCTTGTTC 262
Query 287 AAAAACTCACCGGAATGACCCACTCCGACGAAGATCTCGGCGGTGGTAACGCAATGACCG 346
||||||||||||||||| ||| |||||||||||||| ||||||| ||||||| ||| |
Sbjct 263 AAAAACTCACCGGAATGTCCCGCTCCGACGAAGATCCCGGCGGT---AACGCAACGACAG 319
Query 347 ATCCCGGGGTGGTAAAATCAATCAACCGAACCGTCTCTGAACCAACCGTCGACAGAAAAA 406
||||||||| | ||||||||||||||| || |||||||| | |||||||||||||||||
Sbjct 320 ATCCCGGGG-G--AAAATCAATCAACCGGACTGTCTCTGATCTAACCGTCGACAGAAAAA 376
Query 407 ACAACCGCAATCGCTGCGGCGGCGGT------AATAATTAC--CTT-AGAAACTACTCCG 457
| || || ||||| |||||||| ||| |||||| || | |||| ||||||||
Sbjct 377 ATAATCGGAATCGTTGCGGCGGAGGTGGTGGCAATAATAACTACAACAGAAGCTACTCCG 436
Query 458 GT---G---CCGGAA----A--CGGAAAGGGGATATTTTTTAATAACACGATGATAAGTG 505
|| | |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 437 GTACCGGAGCCGGAACCGGAAACGGAAAGGGGATATTTTTTAATAACACGATGATAAGTG 496
Query 506 AAGATAGTGAATCGTCGTCGGTGATAACAACTGAGGAGAACATCGGAGAACATGGACAGG 565
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 497 AAGATAGTGAATCGTCGTCGGTGATAACAACTGATGAGAACATCGGAGAACATGGACAGG 556
Query 566 TTAATTCTTCTCTTCCGTATTCAGCGGTGGCTATTCCTCCACAGCCACCGCCTCATCCTC 625
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 557 TTAATTCTTCTCTTCCGTATTCGGCTGTGGCTATTCCTCCACAGCCACCGCCTCAT--TC 614
Query 626 CTCCACCTCCGCCGCCACCGTCTATGTACGACGCTGCGGGGATAAACTACGGTGCTTATT 685
||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 615 -TCC---TCCGCC---ACCGTCAATGTACGACGCGGCGGGGATAAACTACGGTGCTTATT 667
Query 686 TACCGACATTTCCGATTTTCCCGCCGGCGAATCCAGCTGATAATTTCTTATGCGGTAATC 745
|||||| ||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 668 TACCGA--TTT----T---CCCGCCGGCGAATCCAACTGATAATTTCTTATGCGGTAATC 718
Query 746 AACCGTTTGCGAATTTTGATGATCCGCTTTTCTTCGCGCCTAATATGAGAAGCTCTTTCT 805
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGCCGTTTGCGAATTTTGATGATCCGCTTTTCTTCGCGCCTAATATGAGAAGCTCTTTCT 778
Query 806 CTTCTTCTTCATCTTCTGGCTTCGATGGCTTGACGGAGTTTCGCGATTTTTAA 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTTCTTCTTCATCTTCTGGCTTCGATGGCTTGACGGAGTTTCGCGATTTTTAA 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5