BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18360.1 Length=858 Score E Sequences producing significant alignments: (Bits) Value Ahg479336 jgi|Araly1|479336|fgenesh2_kg.3__2037__AT3G18360.1 1026 0.0 > Ahg479336 jgi|Araly1|479336|fgenesh2_kg.3__2037__AT3G18360.1 Length=831 Score = 1026 bits (555), Expect = 0.0 Identities = 749/833 (90%), Gaps = 51/833 (6%) Strand=Plus/Plus Query 53 accatcaccatccaAAGAGAGAACCCAATGAAAACAACTCCGGAATCTTATACACTCCCT 112 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 23 ACCATCACCATCCAAAGAGAGAACCAAATGAAAACAACTCCGGAATCTTATACACTCCCT 82 Query 113 CACC-T-----TCACCGTCACCGCCAACTTTAAAAGTCAACAAAGACTCTCACGTTATTA 166 |||| | |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 83 CACCGTCACCGTCACCGTCACCGCCGACGTTAAAAGTCAACAAAGACTCTCACGTTATTA 142 Query 167 AAAAACCACCGTCTCCGTCTTCTTTCTCCTCCGCGGCTAAGCCTCGTCACCCGGTGATCA 226 ||||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||| Sbjct 143 AAAAACCTCCGTCTCCGTCGTCTTCCTCCTCCGCGGCGAAGCCTCGTCACCCGGTGATCA 202 Query 227 TTTACACACACACTCCAAGAATCATACACACTAATCCTAAAGATTTCATGGCTCTTGTTC 286 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 203 TTTACACACACACTCCCAGAATCATACACACTAATCCTAAAGATTTCATGGCTCTTGTTC 262 Query 287 AAAAACTCACCGGAATGACCCACTCCGACGAAGATCTCGGCGGTGGTAACGCAATGACCG 346 ||||||||||||||||| ||| |||||||||||||| ||||||| ||||||| ||| | Sbjct 263 AAAAACTCACCGGAATGTCCCGCTCCGACGAAGATCCCGGCGGT---AACGCAACGACAG 319 Query 347 ATCCCGGGGTGGTAAAATCAATCAACCGAACCGTCTCTGAACCAACCGTCGACAGAAAAA 406 ||||||||| | ||||||||||||||| || |||||||| | ||||||||||||||||| Sbjct 320 ATCCCGGGG-G--AAAATCAATCAACCGGACTGTCTCTGATCTAACCGTCGACAGAAAAA 376 Query 407 ACAACCGCAATCGCTGCGGCGGCGGT------AATAATTAC--CTT-AGAAACTACTCCG 457 | || || ||||| |||||||| ||| |||||| || | |||| |||||||| Sbjct 377 ATAATCGGAATCGTTGCGGCGGAGGTGGTGGCAATAATAACTACAACAGAAGCTACTCCG 436 Query 458 GT---G---CCGGAA----A--CGGAAAGGGGATATTTTTTAATAACACGATGATAAGTG 505 || | |||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 437 GTACCGGAGCCGGAACCGGAAACGGAAAGGGGATATTTTTTAATAACACGATGATAAGTG 496 Query 506 AAGATAGTGAATCGTCGTCGGTGATAACAACTGAGGAGAACATCGGAGAACATGGACAGG 565 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 497 AAGATAGTGAATCGTCGTCGGTGATAACAACTGATGAGAACATCGGAGAACATGGACAGG 556 Query 566 TTAATTCTTCTCTTCCGTATTCAGCGGTGGCTATTCCTCCACAGCCACCGCCTCATCCTC 625 |||||||||||||||||||||| || |||||||||||||||||||||||||||||| || Sbjct 557 TTAATTCTTCTCTTCCGTATTCGGCTGTGGCTATTCCTCCACAGCCACCGCCTCAT--TC 614 Query 626 CTCCACCTCCGCCGCCACCGTCTATGTACGACGCTGCGGGGATAAACTACGGTGCTTATT 685 ||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 615 -TCC---TCCGCC---ACCGTCAATGTACGACGCGGCGGGGATAAACTACGGTGCTTATT 667 Query 686 TACCGACATTTCCGATTTTCCCGCCGGCGAATCCAGCTGATAATTTCTTATGCGGTAATC 745 |||||| ||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 668 TACCGA--TTT----T---CCCGCCGGCGAATCCAACTGATAATTTCTTATGCGGTAATC 718 Query 746 AACCGTTTGCGAATTTTGATGATCCGCTTTTCTTCGCGCCTAATATGAGAAGCTCTTTCT 805 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 AGCCGTTTGCGAATTTTGATGATCCGCTTTTCTTCGCGCCTAATATGAGAAGCTCTTTCT 778 Query 806 CTTCTTCTTCATCTTCTGGCTTCGATGGCTTGACGGAGTTTCGCGATTTTTAA 858 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CTTCTTCTTCATCTTCTGGCTTCGATGGCTTGACGGAGTTTCGCGATTTTTAA 831 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31756389861 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5