BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18370.1
Length=3199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929717 jgi|Araly1|929717|scaffold_302174.1 3967 0.0
> Ahg929717 jgi|Araly1|929717|scaffold_302174.1
Length=2494
Score = 3967 bits (2148), Expect = 0.0
Identities = 2357/2460 (96%), Gaps = 6/2460 (0%)
Strand=Plus/Plus
Query 368 CTTGAAGGCGAATCGAAGAGATGGGTCGGAGAATAAAGAGGAAAGGTCTGATAAACACGG 427
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTGAAGGCGAATTGAAGAGATGGGTCGGAGAATAAAGAGGAAAGGTCTGATAAACACGG 60
Query 428 AAGCTGCAAGAGAATTTATCAATCATCTAGTTGCTGAGAGGCATTCGCTGTTGTTGCTGG 487
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 AAGCTGTTAGAGAGTTTATCAATCATCTAGTTGCTGAGAGACATTCGCTGTTGTTGCTGG 120
Query 488 TTCCTTTGGTCTTAGCTTTCTGGGCAATTGAAAGATGGGTCTTTGCTTTCTCCAATTGGG 547
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TTCCTTTGGTCTTAGCTTTCTGGGCAATTGAGAGATGGGTCTTTGCTTTCTCCAATTGGG 180
Query 548 TTCCTCTCGTTGTCGCCGTCTGGGCTTCTCTTCAGTATGGAAGTTACCAAAGGGCACTAC 607
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TTCCTCTCGTTGTCGCCGTTTGGGCTTCTCTTCAGTATGGAAGTTACCAAAGGGCAATAC 240
Query 608 TTGCAGAAGATCTAACCAAGAAGTGGAGGCAAACCGTTTTCAATGCGTCGACGATAACTC 667
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGCAGAAGATCTTACCAAGAAGTGGAGGCAAACCGTTTTCAATGCGTCGACGATAACTC 300
Query 668 CATTGGAACATTGTCAATGGCTGAACAAGTTACTGTCTGAAATTTGGCTAAACTATATGA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATTGGAACATTGTCAATGGCTGAACAAGTTACTGTCTGAAATTTGGCTAAACTATATGA 360
Query 728 ACAAGAAACTCTCTCTTAGGTTTTCTTCTATGGTGGAGAAACGATTGAGGCAACGAAGAT 787
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAAGAAACTCTCGCTCAGATTTTCTTCTATGGTGGAGAAACGATTGAGGCAACGAAGAT 420
Query 788 CAAGATTAATCGAAAATATACAATTGTTGGAGTTTTCTCTTGGCTCATGCCCTCCTTTGC 847
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 CAAGATTAATAGAAAATATACAATTGTTGGAGTTTTCTCTTGGCTCGTGCCCTCCTTTGC 480
Query 848 TAGGACTACATGGAACTTGTTGGTCAAAATCAGGGGAACAGAAAATCATGCGATTGGATT 907
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TGGGACTCCATGGAACTTGTTGGTCAAAATCAGGGGAACAGAAAATTATGCGATTGGATT 540
Query 908 TCAACTGGGACACAACGGATCTAAGTATTTTGTTGCAAGCCAAGTTATCCATGCCGTTTA 967
||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 541 TCAGTTGGGACACAACGGATCTAAGCATTTTGTTGCAAGCCAAGTTATCCAAACCATTTA 600
Query 968 ATCGAACAGCACGAATCGTTGTCAACAGTCTCTGCATCAAGGGAGATATTCTGATCAGAC 1027
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 601 ATCGAACAGCACGAATCGTTGTCAATAGTCTCTGCATCAAGGGCGATATTCTGATCAGAC 660
Query 1028 CGATTCTTGAAGGAAGAGCATTGCTTTATTCCTTTGTATCGAATCCTGAAGTTAGAATCG 1087
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGATTCTTGAAGGAAAAGCATTGCTTTATTCCTTTGTATCGAATCCTGAAGTTAGAATCG 720
Query 1088 GAGTTGCTTTCGGTGGTGGCGGTGGCCAATCTCTCCCCGCTACAGAGCTTCCTGGTGTCT 1147
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 721 GAGTTGCTTTCGGTGGTGGCGGTGGCCAATCTCTCCCCGCGACAGAGCTCCCCGGTGTCT 780
Query 1148 CCTCTTGGCTGGTAAAGATTCTAACGGAAACTTTGAACAAGAAGATGGTAGAGCCACGCC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTCTTGGCTGGTAAAGATTCTAACGGAAACTTTGAACAAGAAGATGGTAGAGCCACGCC 840
Query 1208 GGGGATGTTTCTCGTTACCCGCAACAGATCTTCACAAAACAGCCATCGGGGGAATTATCT 1267
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 841 GGGGATGTTTCTCGTTACCAGCAACCGATCTTCACAAAACAGCCATCGGGGGAATCATCT 900
Query 1268 ACGTAACCGTTGTATCTGGTAACAATCTTAACCGCAGAATTCTTCGGGGAAGCCCCTCGA 1327
|||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 901 ACGTAATCGTTGTCTCTGGTAACAATCTTAACCGCAGCATTCTTCGGGGAAGCCCGTC-A 959
Query 1328 A-AAGTTCTGAGATCGGAGAAGGTAGCAGCGGAAATAGCAGCAGCAAACCTGTTCAAACA 1386
| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 960 AGAAGTTCTGATATTGGAGACGGTAGCAGCGGAAATAGCAGCAGCAAACCTGTTCAGACA 1019
Query 1387 TTTGTGGAGGTCGAACTCGAGCAACTTTCTCGACGAACCGAGATGAAGTCAGGACCGAAT 1446
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTGTCGAGGTCGAACTCGAACAACTTTCTCGACGAACCGAGATGAAGTCAGGACCGAAT 1079
Query 1447 CCAGCTTATCAGTCGACATTTAACATGATCTTACACGACAATACAGGGACACTCAAGTTT 1506
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1080 CCAGCTTATCAATCGACATTTAACATGATCTTACACGACAATACAGGGACACTCAAATTT 1139
Query 1507 AACCTCTATGAAAATAATCCTGGGAGTGTCAGATATGACAGTCTCGCTAGCTGTGAAGTT 1566
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1140 AACCTCTATGAAAATAATCCTGGGAGTGTCAGATACGACAGTCTCGCTAGCTGCGAAGTT 1199
Query 1567 AAGATGAAATATGTAGGTGATGATTCAACGATGTTTTGGGCCGTTGGATCTGATAACGGT 1626
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1200 AAGATGAAATACGTTGGTGATGATTCAACGATGTTTTGGGCCGTTGGATCTGATAACAGT 1259
Query 1627 GTGATTGCAAAACACGCTGAGTTCTGTGGTCAAGAAATCGAGATGGTTGTTCCGTTTGAA 1686
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTGATTGCGAAACACGCTGAGTTCTGTGGTCAAGAAATCGAGATGGTTGTTCCGTTTGAA 1319
Query 1687 GGAGTTAGCTCCGGAGAGTTGACTGTCCGGCTACTTCTAAAAGAATGGCACTTCTCTGAT 1746
||||| |||||||| |||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 1320 GGAGTCAGCTCCGGCGAGTTGACGGTCAGGCTACTTCTAAAAGAATGGCATTTCTCTGAT 1379
Query 1747 GGCTCACATAGCTTGAATAGCGTTAATTCGAGTTCATTACACTCCCTCGACAGCTCGTCT 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGCTCACATAGCTTGAATAGCGTTAATTCGAGTTCATTACACTCCCTCGACAGCTCGTCT 1439
Query 1807 GCCCTCCTCTCGAAAACCGGCCGGAAAATTATCGTGACGGTTTTGGCTGGAAAGAACCTT 1866
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1440 GCCCTCCTCTCGAAAACCGGCCGGAAAATTATTGTGACGGTTTTGTCTGGAAAAAACCTT 1499
Query 1867 GTTTCTAAAGATAAGTCCGGAAAATGTGATGCCTCTGTCAAGTTACAGTACGGAAAAATT 1926
||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 1500 GTTTCTAAAGACAAGTCCGGAAAATGTGATGCATCCGTCAAGTTGCAGTACGGGAAAATT 1559
Query 1927 ATACAAAAGACGAAGATAGTGAACGCAGCAGAGTGTGTGTGGAACCAGAAATTTGAGTTC 1986
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 1560 ATACAAAAGACGAAGATAGTGAACGCAGCGGAGAGTGCCTGGAACCAGAAATTTGAGTTC 1619
Query 1987 GAAGAGTTAGCCGGAGAAGAATATTTAAAGGTGAAATGCTATAGAGAAGAGATGCTTGGC 2046
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1620 GAAGAGTTAGCCGGGGAAGAATATTTAAAGGTGAAATGCTACAGAGAAGAGATGCTTGGC 1679
Query 2047 ACGGACAACATCGGTACAGCTACATTGAGTCTTCAAGGAATCAATAACAGCGAAATGCAT 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ACGGACAACATCGGTACAGCTACATTGAGTCTTCAAGGAATCAATAACAGCGAAATGCAT 1739
Query 2107 ATATGGGTTCCGCTTGAAGATGTTAATTCTGGAGAAATAGAGCTTTTGATCGAAGCTTTG 2166
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1740 ATATGGGTTCCGCTTGAAGAGGTTAATTCTGGAGAAATAGAGCTTTTGATCGAAGCTATG 1799
Query 2167 GATCCCGAGTACAGCGAAGCGGATTCTAGTAAAGGCTTGATTGAATTGGTTCTCGTTGAA 2226
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1800 GATCCCGAGTACAGCGAAGCGGATGCTAGTAAAGGCATGATTGAATTGGTTCTCGTTGAA 1859
Query 2227 GCGCGGGATCTTGTGGCCGCGGATATTAGAGGAACCAGTGATCCTTATGTTAGGGTTCAA 2286
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1860 GCGCGGGATCTTGTGGCCGCGGATCTTAGAGGAACCAGTGATCCTTATGTTAGGGTTCAA 1919
Query 2287 TATGGAGAGAAGAAACAGAGGACAAAGGTGATTTATAAGACGTTGCAACCAAAATGGAAC 2346
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1920 TATGGAGAGAAGAAACAGAGGACAAAGGTGATTTATAAGACACTGCAACCAAAATGGAAC 1979
Query 2347 CAGACAATGGAGTTTCCAGATGATGGGAGCTCCTTGGAGCTACATGTGAAAGACTATAAC 2406
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1980 CAGACAATGGAGTTTCCAGATGATGGGAGCTCCTTGGAGCTACATGTGAAAGACCATAAC 2039
Query 2407 ACTCTGCTTCCGACTTCAAGCATCGGTAACTGCGTTGTGGAGTACCAAGGGTTAAAGCCA 2466
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2040 ACTCTGCTTCCGACTTCAAGCATCGGTAACTGCGTCGTGGAGTACCAAGGGTTAAAGCCA 2099
Query 2467 AATGAGACTGCCGATAAGTGGATAATTCTCCAAGGAGTGAAACACGGGGAGGTCCATGTC 2526
|||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||
Sbjct 2100 AATGAGACTGCCGATAAGTGGATACCTCTCCAAGGAGTGACATGCGGCGAGGTCCATGTC 2159
Query 2527 AGAGTCACGAGGAAAGTCACGGAGATTCAGAGACGCGCCAGCGCAGG-TCCTGGCACACC 2585
|||||||||||||||||||||||||||||||||||| ||||||| || || |||| | ||
Sbjct 2160 AGAGTCACGAGGAAAGTCACGGAGATTCAGAGACGCCCCAGCGCGGGGTC-TGGCTCCCC 2218
Query 2586 GTTTAACAAAGCTCTGTTACTGTCCAACCAGATGAAGCAGGTGATGATAAAGTTTCAGAA 2645
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 GTTTAACAAAGCTCTGTTGCTGTCCAACCAGATGAAGCAGGTGATGATAAAGTTTCAGAA 2278
Query 2646 TTTGATTGACGATGGAGATCTTGAAGGTCTTGCTGAAGCTTTAGAAGAGCTGGAAAGTTT 2705
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 2279 TTTGATTGACGATGGAGATCTTGAAGGTCTTTCTGAAGCTTTAGAAGAGCTGGAGAGTTT 2338
Query 2706 GGAGGACGAACAAGAACAGTATTTGCTCCAGCTTCAGACAGAGCAA-TCGCTGCTTATCA 2764
||||| |||||||||| |||||||| |||||||||||||||||||| | |||||||||||
Sbjct 2339 GGAGGTCGAACAAGAAGAGTATTTGGTCCAGCTTCAGACAGAGCAAAT-GCTGCTTATCA 2397
Query 2765 ACAAGATCAAAGACCTTGGTAAGGAGATTCTTAACTCATCCCCAGCTCAAGCCCCGTCTC 2824
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 2398 ACAAGATCAAAGACCTTGGTAAGGAGATTCTTAACTCGTCCCCAGTTCAAGCCCCATCTC 2457
Score = 91.6 bits (49), Expect = 3e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 2825 GAGATTCTTAACTCGTCCCCAGTTCAAGCCCCGTCTCATTCCCCATCTCGAT 2876
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2421 GAGATTCTTAACTCGTCCCCAGTTCAAGCCCCATCTCATTCCCCATCTCGAT 2472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120860347385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5