BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18380.2
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479338 jgi|Araly1|479338|fgenesh2_kg.3__2039__AT3G18380.2 2222 0.0
> Ahg479338 jgi|Araly1|479338|fgenesh2_kg.3__2039__AT3G18380.2
Length=1445
Score = 2222 bits (1203), Expect = 0.0
Identities = 1373/1452 (95%), Gaps = 23/1452 (2%)
Strand=Plus/Plus
Query 1 GGTTTCGTTGTCGTTGGGTCACCGGCCGTACTAGAGAGATTCACCGTGAATTCGAATATT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1 GGTTTCGTTGTCGTTGGGTCACCGGCCGTACT--AGAGATTCACCGTGAATTCGAAAATT 58
Query 61 AAGTGAGAGAAGCTCCGA-TTGATTTCACTTTCTGCCGCCAAtttttg----ttttt-tC 114
||||||||||||||| || ||||| |||||||||||||||||||||| ||||| |
Sbjct 59 AAGTGAGAGAAGCTCTGATTTGATACCACTTTCTGCCGCCAATTTTTGTTTTTTTTTGTG 118
Query 115 TT---CGGTGAGACGAAGAAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGT 171
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTCCCCGGTGAGACGAAGGAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGT 178
Query 172 TTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAG 231
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCGATTTATCCTGCCCGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAG 238
Query 232 CAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGC 298
Query 292 GGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGAT 351
||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 299 GGAAGGGGAAAATTGTTGTGCAATTCAAGCAAATCTGGAACTGGTTCCAAAATAGGCGAT 358
Query 352 ATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGC 411
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGCTTTAAGAGCAAGGGGAAATAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGC 418
Query 412 GTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCA 471
||||||||||||||||||||||||||| |||| ||||||| ||| | |||||||||||||
Sbjct 419 GTATGGATTTACCAAATCAGATGAGAAATGTGGTTCAACCGTTAGCCGTTCCTAAAACCA 478
Query 472 CTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCG 531
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 479 ATCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCCGGTATTTTAGTTCCCG 538
Query 532 GTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGG 598
Query 592 ATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATC 651
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGGTGCTTGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATC 658
Query 652 CGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCA 711
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 CGGAAGTGCAGGTTCGATTTGCGGGTTTTGAAGTTGAAGAAGATGAATGGATAAATGTCA 718
Query 712 AAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTG 771
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAAAGCACGTAAGACAAAGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTG 778
Query 772 CTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCA 831
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 779 CTGGAGATCTCGTACTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGATGCCA 838
Query 832 TTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGG 891
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 TTGTTCTTGACGCACAAAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGATTCTTGG 898
Query 892 TGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGC 951
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 899 TGCGTTACAGCCACGACCAGTCCGAGCAGGAAATTGTTCCTTTGAGGAAGATTTGTCGGC 958
Query 952 GGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACT 1011
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 959 GGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCTGTAAACGATTTGGGTAACT 1018
Query 1012 CAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCG 1071
| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | |||
Sbjct 1019 CGAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCGAAAACCCCTGTTTCACAATCCG 1078
Query 1072 GAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAG 1131
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1079 GAGCTACAGTTCCCATTGTTGCACCCGAGCCAAAAGATCCGAGCCTGAGTGCCACTCCAG 1138
Query 1132 CCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAGGCCA 1191
||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||
Sbjct 1139 TCACTTTGGTTCAGCCTAGCTCCAGTGCAGCCACTGTCCCCGCTGGTTCTGCCTAGGCCA 1198
Query 1192 TGTAATTTCTATCCCCGTTTGTAAC-AGCCATTTTTCACAGTTACTAGTAGAGGTT-A-A 1248
|||||||||||||||| |||||||| | ||||||| ||||||||||| ||||| || | |
Sbjct 1199 TGTAATTTCTATCCCCTTTTGTAACCA-CCATTTT-CACAGTTACTAATAGAGCTTTAGA 1256
Query 1249 C-TTG--GGATCATATGCATT-GTACTCTCACACAATGAATTAGTCATCTAAAGCTGTAT 1304
|| |||||||||||||| ||| |||||||| ||| ||||| ||||||||||||||
Sbjct 1257 GGTTAACGGATCATATGCATTTGTAATCTCACACTGTGACTTAGTTATCTAAAGCTGTAT 1316
Query 1305 CATGCCATGTTACTTGATCCTTCATGTATGATGGAATATTTATGGTTTAGTCCGGTTTAT 1364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 CATGCCATGTTACTTGATCCTTCATGTATGATGGAATAATTATGGTTTAGTCCGGTTTAT 1376
Query 1365 TCATCATCTGTTGATGGTCACCGGTTTTTTACTCTTTTGAACAAACATGCTCGAATCATG 1424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1377 TCATCATCTGTTGATGGTCACCGGTTT---ACTCTTTTGAACAAACATGCTCGAATCATG 1433
Query 1425 TGGATTTATTCT 1436
| ||||||||||
Sbjct 1434 TTGATTTATTCT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5