BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18390.1
Length=3021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929719 jgi|Araly1|929719|scaffold_302176.1 4205 0.0
> Ahg929719 jgi|Araly1|929719|scaffold_302176.1
Length=2581
Score = 4205 bits (2277), Expect = 0.0
Identities = 2474/2571 (96%), Gaps = 6/2571 (0%)
Strand=Plus/Plus
Query 84 GTCAATGGCTTTGGCTCCACTTAATTTTACGGAAATGCCACTGAGAAGCTCTCTTCCTCT 143
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 17 GTCAATGGCTTTGGTTCCACTTAATTTTACGGAAATGCCACTGAGAAGCTCTCTTCCTTT 76
Query 144 GACCTCTAGCTCTCGCTATTGTTCCTCTCCTTCGCTTCACGCATTGCTCTTCTATTCGTT 203
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||
Sbjct 77 GACCTCTAGCTCTCGCTACTGTTCGTCTCCTTCGCTTCACGCATTGTTATTCTATTCGTT 136
Query 204 GGGTGTGAAACCCTCGCGTCAACAAATTGTTCGGCCATTCTCTTCGCTGCGTACAAGCGA 263
| || ||||||||||||||| |||||| |||||||||||| |||||| |||||||||||
Sbjct 137 AGCTGCGAAACCCTCGCGTCATCAAATTATTCGGCCATTCTTTTCGCTCCGTACAAGCGA 196
Query 264 GCGTAGCAACAACAGGAGCAATAACAATCGTCGATTAGATCAACGTAATCATAAACCTAC 323
|||||||||||| ||||||||||||||||||||| | ||||| || ||||||||||||||
Sbjct 197 GCGTAGCAACAATAGGAGCAATAACAATCGTCGAGTGGATCAGCGGAATCATAAACCTAC 256
Query 324 TCCTCCTTGGATAGATAAGTGGCCTCCGTCATCCTCCGGAGCTGGCGGTGATCATGCCGG 383
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 257 TCCTCCTTGGATTGATAAGTGGCCTCCGTCATCCGCCGGAGCTGGCGGTGATCATGCTGG 316
Query 384 GAAGAAAGGTGGTGAAAACAACGGCGGAGATAGAATTCGGTCTGCGGAGGAGGAAGCGGA 443
||||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 317 GAAGAGAGGTAGTGAAAACAACGGCGGAGATAAAATTCGGTCGGCGGAGGAGGAAGCGGA 376
Query 444 AGCGAAACTTCGGTATTTGGAGAAGGATAAAGGACAAAACGCGATTGAGAGGATTGTTCT 503
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 377 AGCGAAACTTCGGTATTTGGAGCGGGATAAAGGACAAAACGCGATTGAGAGGATTGTTCT 436
Query 504 TCGGCTACGGAATTTAGGATTAGGTTCGGATGATGAGGACGATGTGGAAGATGACGAGGG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TCGGCTACGGAATTTAGGATTAGGTTCGGATGATGAGGACGATGTGGAAGATGACGAGGG 496
Query 564 AGGTGGAATTAACGGCGGAGATGTGAAGCCGGTGACTGGAGAAGAGAGATTGGGGGATTT 623
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AGGCGGAATTAACGGCGGAGATGTGAAGCCGGTGACTGGAGAAGAGAGATTGGGGGATTT 556
Query 624 GTTGAAGAGAGAGTGGGTGAGACCTGATATGATGCTTGCTGAGGGAGAAGAGAGTGAGGA 683
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 557 GTTGAAGAGAGAGTGGGTGAGACCTGATATGATACTGGCTGAGGGAGAAGAGAGTGAGGA 616
Query 684 AGAGGATGAGGTATTATTGCCATGGGAGAAAAATGAGGAAGAGCAGGCGGCGGAGAGAGT 743
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 617 AGAGGATGAGGTGTTATTGCCATGGGAGAAGAATGAGGAAGAACAGGCGGCGGAGAGAGT 676
Query 744 AGTAGGAGAAGGAGGAGTGGCGGTGATGCAGAAGAGGAGAGCTAGAGCTCCATCACTGGC 803
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 677 AGAAGGAGAAGGAGGAGTGGCGGTGATGAAGAAGAGGAGAGCTAGAGCTCCATCTCTGGC 736
Query 804 GGAGCTCACCGTTGAGGATTCTGAGTTACGGCGGTTAAGGAGGGATGGAATGTATCTGAG 863
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 737 GGAGCTTACCGTTGAGGATTCTGAGTTACGGCGGTTGAGGAGGGATGGAATGTATTTGAG 796
Query 864 GGTTAGGATCAATATACCAAAAGCTGGGCTAACGCAGGCAGTGATGGAGAAGATTTATGA 923
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 797 GGTAAGGATCAATATACCAAAAGCTGGGCTAACGCAGGCAGTGATGGAAAAGATTTATGA 856
Query 924 TACTTGGAGGAAAGAAGAGCTTGTGAGGCTAAAGTTCCACGAAGTGCTTGCTCGTGACAT 983
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 857 TACTTGGAGGAAAGAAGAACTTGTGAGGCTAAAGTTCCATGAAGTGCTTGCTCGTGACAT 916
Query 984 GAAGACGGCCCATGAGATTGTTGAGCGTCGAACTGGTGGAATGGTGATATGGAGGGCCGG 1043
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 917 GAAGACGGCCCATGAGATTGTTGAGCGTCGTACTGGAGGAATGGTGATATGGAGGGCTGG 976
Query 1044 AAGTGTAATGGTGGTTTATCGTGGACTTGACTATAAAGGACCTCCTGTGATCTCTAATCA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AAGTGTAATGGTGGTTTATCGTGGACTTGACTATAAAGGACCTCCTGTGATCTCTAATCA 1036
Query 1104 AATGGCCGGTCCTAAAGAGACTCTTTTTGTCCCAGATGTATCTTCTGCTGGCGATGAAGC 1163
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AATGGCCGGGCCAAAAGAGACTCTTTTTGTCCCAGATGTATCTTCTGCTGGCGATGAAGC 1096
Query 1164 AACAAATGCCAAAGATAACCAAAGTGCACCTTTGGTAATCAAAGATCCGATCATCAAGAA 1223
||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||
Sbjct 1097 AACAAATGCCAAAGATAACCAAAGTCCACCTTTGGAAATCAAAGATCCCATCAGCAAGAA 1156
Query 1224 CCCTATTCGCAAAGAGAATATGACAGAAGAAGAAGTTGAATTTAACAGTCTATTAGACAG 1283
||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1157 CCCTATTCGTAAAGAGAATATGTCAGAAGAAGAAGCTGAATTTAACAGTCTATTAGACAG 1216
Query 1284 CTTAGGTCCACGTTTTCAAGAGTGGTGGGGTACTGGGGTACTACCTGTGGACGCTGACTT 1343
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1217 CTTAGGTCCACGTTTTCAAGAGTGGTGGGGTACTGGGGTGCTACCTGTGGACGCTGACTT 1276
Query 1344 ACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGGCTTCTTCCTACTGGGATGAG 1403
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1277 ACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGACTTCTTCCTACTGGGATGAG 1336
Query 1404 ATCAAATTTGACCAATGCCGAAATGACAAATCTCAGGAAGATTGGTAAAACTCTCCCATG 1463
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1337 ATCAAATTTGACCAATGCCGAAATGACAAATCTTAGGAAGATTGGTAAAACTCTCCCATG 1396
Query 1464 CCATTTTGCTCTTGGTAGGAACAGAAATCACCAAGGATTGGCAGCTGCAATACTCCAGAT 1523
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 CCATTTTGCTCTTGGCAGGAACAGAAATCACCAAGGATTGGCAGCTGCAATACTCCAGAT 1456
Query 1524 CTGGGAGAAAAGTCTAATTGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAA 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 CTGGGAGAAAAGTCTAATTGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAA 1516
Query 1584 CAAACTAATGGCGGATGAAGTGAAGACATTGACAGGGGGTGTCTTGCTGCTCAGAAATAA 1643
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1517 CAAACTAATGGCGGATGAAGTGAAGGCATTGACAGGGGGTGTCTTGCTGCTCAGAAATAA 1576
Query 1644 GTATTACATTGTAATATATCGTGGGAAGGACTTCCTTCCTTCAAGTGTGGCAGCTACTTT 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 GTATTACATTGTAATATATCGTGGGAAGGACTTCCTTCCTTCAAGTGTGGCAGCTACTTT 1636
Query 1704 AGCAGAAAGACAAGAATTAACGAAAGAGATTCAAGATGTCGAAGAGAGGGTAAGAAATCG 1763
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1637 GGCAGAAAGACAAGAATTAACAAAAGAGATTCAAGATGTCGAAGAGAGGGTAAGAAATCG 1696
Query 1764 TGAGATTGAGGCTGTTCAGCCTGTTGGTGACAAAGTACCAGCAGAAGCTGGCACTCTGGC 1823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 CGAGATTGAGGCTGTTCAGCCTGTTGGTGACAAAGTACCAGCAGAAGCTGGCACTCTGGC 1756
Query 1824 CGAGTTTTATGAGGCTCAAGCCCGATGGGGGAAGGAAATAACTCCAGACCATCGTGAAAA 1883
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1757 CGAGTTTTATGAGGCTCAAGCTCGATGGGGGAAGGAAATAACTCCGGACCATCGTGAAAA 1816
Query 1884 GATGATTGAAGAAGCTTCAAGGGTTGCAAATGCTAGAGTTGTTAAACGAATACAACACAA 1943
|||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 1817 GATGATTGAAGAAGCTTCAAGGGTCGCGAACGCTAGAGTTGTTAAACGAATCCAACACAA 1876
Query 1944 ACTAAACCTTGCCCAATCGAAGTTTCAAAGAGCAGAGAAACTGTTGTCCAAAATAGAAGC 2003
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 ACTAAACCTTGCCCAATCAAAGTTTCAAAGAGCAGAGAAACTGTTGTCCAAAATAGAAGC 1936
Query 2004 CTCTATGATTCCAAATGGACCTGATTATGATCAAGAGGTCATCTCCGAGGAAGAAAGAGC 2063
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 CTCAATGATTCCAAATGGACCTGATTATGATCAAGAGGTCATCTCCGAGGAAGAAAGAGC 1996
Query 2064 TATGTTCCGGAAAGTGGGACTGAAAATGAAGGCATACTTACCCATAGGTATCCGTGGTGT 2123
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1997 TATGTTCCGGAAAGTGGGATTGAAAATGAAGGCATACTTACCCTTAGGTATCCGTGGTGT 2056
Query 2124 ATTTGATGGAGTCATTGAGAACATGCATCTGCATTGGAAACACAGAGAATTGGTGAAGCT 2183
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2057 TTTTGATGGAGTCATTGAGAACATGCATCTGCATTGGAAGCACAGAGAATTAGTGAAGCT 2116
Query 2184 TATATCAAAACAGAAGAACCAAGCATTTGTTGAGGAGACAGCCCGGTTACTAGAATACGA 2243
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 2117 TATATCAAAACAGAAGAACCTAGCATTTGTTGAGGACACAGCCCGGTTACTAGAATATGA 2176
Query 2244 GAGTGGTGGAGTTCTTGTGGCAATAGAAAAGGTTCCTAAAGGATTTGCGCTTATTTATTA 2303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 GAGTGGTGGAGTTCTTGTGGCAATAGAAAAGGTTCCTAAAGGATTTGCGCTTATTTATTA 2236
Query 2304 CCGTGGGAAGAATTACAGGAGACCCATTAGCTTGAGACCAAGGAATCTTCTGACAAAAGC 2363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2237 CCGTGGGAAGAATTACAGGAGACCCATTAGCTTGAGACCAAGAAATCTTCTGACAAAAGC 2296
Query 2364 AAAAGCATTGAAACGTTCCATTGCAATGCAACGCCACGAGGCACTTAGTCAGCATATTTC 2423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 AAAAGCATTGAAACGTTCCATTGCAATGCAACGCCACGAGGCACTTAGTCAGCATATTTC 2356
Query 2424 TGAACTGGAGAGAACAATAGAGCAAATGCAAAGCCAACTCACTTCGAAAAACCCGTCATA 2483
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2357 TGAACTGGAGAGAACAATAGAGCAAATGCAAAGCGAACTCACTTCGAAAAACCCGTCATA 2416
Query 2484 CAGtgaatcagaatgggagaacgatgaggatgatgatgatgatgaagaagaagagaaaga 2543
|||||||||||||||||| |||||||||||||||||||| || | || | ||||||||
Sbjct 2417 CAGTGAATCAGAATGGGAAAACGATGAGGATGATGATGAGGA-G--GA-G--GAGAAAGA 2470
Query 2544 tgatgtggaggataatgagagtgattgggatgaaACTGATGGCGAATCTGCAATTTCTAG 2603
||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2471 TGATGTGGAAGATAATGAGAGTGATTGGGATGAAACTGATGGCGAATCTACACTTTCTAA 2530
Query 2604 TATCGAAGAAGCTGATATGTCATCGCGCTAAGCTGATAAAGTTTTTAACAC 2654
|||||| |||||||| || |||||||||||||||||||||||||| |||||
Sbjct 2531 TATCGACGAAGCTGACATTTCATCGCGCTAAGCTGATAAAGTTTTGAACAC 2581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114080283775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5