BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18400.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904814 jgi|Araly1|904814|Al_scaffold_0003_1942 1657 0.0
> Ahg904814 jgi|Araly1|904814|Al_scaffold_0003_1942
Length=945
Score = 1657 bits (897), Expect = 0.0
Identities = 929/945 (98%), Gaps = 0/945 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAAAATCTTCCTCCGGGGTTCAGATTTCATCCTACAGACGAGGAGCTCATAACG 60
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAAGAAAATCTTCCTCCGGGATTCAGATTTCATCCTACTGACGAGGAGCTCATAACT 60
Query 61 CATTATCTATGTCGGAAAGTCTCCGATATAGGATTCACCGGTAAAGCTGTCGTCGACGTT 120
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CATTATCTATGTAGGAAAGTCTCCGATATTGGATTCACCGGTAAAGCTGTCGTCGACGTT 120
Query 121 GATCTCAACAAGTGTGAACCTTGGGATTTGCCAGCCAAGGCTTCAATGGGAGAGAAAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCTCAACAAGTGTGAACCTTGGGATTTGCCAGCCAAGGCTTCAATGGGAGAGAAAGAG 180
Query 181 TGGTATTTCTTCAGCCAAAGGGATCGGAAATATCCAACCGGTTTAAGAACAAACCGGGCA 240
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 TGGTATTTCTTCAGCCAAAGGGATCGGAAATATCCAACCGGTTTTAGGACAAACCGGGCA 240
Query 241 ACAGAAGCTGGTTACTGGAAAACCACCGGGAAAGATAAAGAAATATACCGAAGTGGAGTG 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 ACAGAAGCTGGTTACTGGAAAACCACCGGGAAAGATAAAGAAATATACAGAAGTGGAGTG 300
Query 301 TTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCCAAAGGTGAGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCCAAAGGTGAGAAA 360
Query 361 AGCAATTGGGTTATGCATGAGTACAGGCTTGAGAGCAAACAACCTTTCAACCCCACGAAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 AGCAATTGGGTTATGCATGAGTACAGGCTTGAGAGCAAACAACCTTTCAACCCCACAAAT 420
Query 421 AAGGAGGAATGGGTAGTGTGTAGGGTTTTCGAAAAGAGCACGGCAGCAAAGAAAGCACAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGAGGAATGGGTAGTGTGTAGGGTTTTCGAAAAGAGCACGGCAGCAAAGAAAGCACAA 480
Query 481 GAACAACAACCTCAATCTTCTCAACCATCTTTTGGATCTCCATGCGATGCAAACTCATCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAACAACAACCTCAATCTTCTCAACCATCTTTTGGATCTCCATGCGATGCAAACTCATCA 540
Query 541 ATGGCAAATGAGTTTGAAGATATTGATGAGCTTCCGAATCTGAATTCAAACTCATCAACC 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 ATGGCAAATGAGTTTGAAGATATTGATGAGCTTCCCAATCTGAATTCAAACTCATCAACC 600
Query 601 ATCGATTACAATAATCATATCCATCAATATTCGCAACGCAATGTTTACTCAGAAGACAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCGATTACAATAATCATATCCATCAATATTCGCAACGCAATGTTTACTCAGAAGACAAC 660
Query 661 ACAACAAGTACGGCTGGTCTCAACATGAACATGAACATGGCTAGTACTAATCTTCAGTCT 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 ACTACAAGTACGGCTGGTCTCAACATGAACATGAACATGGCTAGTACTAATCTTCCGTCT 720
Query 721 TGGACAACAAGTCTCCTTGGTCCGCCTTTATCTCCAATCAACTCTTTGTTGCTCAAGGCT 780
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 TGGACAACAAGTCTACTTGGTCAGCCTTTATCTCCAATCAACTCTTTGTTGCTCAAGGCT 780
Query 781 TTCCAAATCAGGAACTCTTATAGTTTCCCAAAAGAGATGATCCCCAGTTTCAATCATTCT 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCCAAATTAGGAACTCTTATAGTTTCCCAAAAGAGATGATCCCCAGTTTCAATCATTCT 840
Query 841 TCTCTTCAACAAGGAGTCTCCAATATGATCCAAAATGCTTCAAGTTCGTCTCAAGTGCAA 900
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 TCTCTTCAACAAGGAGTCTCCAATATGATCCAAAATGGTTCAAGTTCGTCTCAAGTGCAA 900
Query 901 CCCCAACCGCAAGAGGAAGCGTTTAATATGGACTCCATATGGTGA 945
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCCCAACCGCAAGAGGAAGCGTTTAATATGGACTCCATATGGTGA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5