BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18410.1
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479342 jgi|Araly1|479342|fgenesh2_kg.3__2043__AT3G18410.1 900 0.0
Ahg474056 jgi|Araly1|474056|fgenesh2_kg.1__4010__AT1G49140.1 388 2e-107
> Ahg479342 jgi|Araly1|479342|fgenesh2_kg.3__2043__AT3G18410.1
Length=587
Score = 900 bits (487), Expect = 0.0
Identities = 557/589 (95%), Gaps = 12/589 (2%)
Strand=Plus/Plus
Query 1 AGATAATCACGAAGACGACGAGTGAAGAAG-A-AGA--AG---AAGCAATGGGGAGAAAG 53
||| |||||||||||||||||||||||||| | ||| || |||||||||| ||||||
Sbjct 1 AGAAAATCACGAAGACGACGAGTGAAGAAGAAGAGAGGAGAAAAAGCAATGGGAAGAAAG 60
Query 54 AAGGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGCTTTGATCCGGAAAATCCATAC 113
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 61 AAGGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGATTTGATCCGGCCAATCCATAT 120
Query 114 AAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAGAAATGGATCCAA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAGAAATGGATCCAA 180
Query 174 ATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGCGTCGAAGGAGTC 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGCGTCGAAGGAGTC 240
Query 234 AATCACTATCAGAAATGTCGTCATCTTGTTCAGCAGTATCTCGATTCCACTCGCGGCGTC 293
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AATCACTACCAGAAATGTCGTCATCTTGTTCAGCAGTATCTTGATTCCACTCGCGGCGTC 300
Query 294 GGTTGGGGAAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACCGGAGGCTGTTGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTGGGGAAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACCGGAGGCTGTTGAA 360
Query 354 GCTGAATAATGTTGTGTGCCTCATTGAGATGTCTGAGGTTTTGATATGGGACATAGAATG 413
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 361 GCTGAATAATGTTGTGTGCCTCATTGAGATGTCTGAGCTTTTGATATGGGACATAAAATG 420
Query 414 GAATCATTTCACAAGCTAATGGCTCCCTGATATCTTCCAAACTCTGT--AGATTTCTCTT 471
|| || ||||||||||||||||||||||||| |||||| ||| |||| | |||||||||
Sbjct 421 GA-TCTTTTCACAAGCTAATGGCTCCCTGATTTCTTCCGAACGCTGTGCAAATTTCTCTT 479
Query 472 GTTCTTAGAAACTTGTCGGTCTTTGGACCAACGGATTCATGTAATTGAGCTTTGAGTATT 531
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTCTTAGAAACTTGTGGGTCTTTGGACCAACGGATTCATGTAATTGAGCTTTGAGTATT 539
Query 532 GTTACACTCCACAGTATCAGTTTCTGAT-GATCAAATAAGTCCCATTTT 579
|||| ||||||||||||| ||||||||| | ||||||||||||| ||||
Sbjct 540 GTTATACTCCACAGTATCCGTTTCTGATTG-TCAAATAAGTCCCTTTTT 587
> Ahg474056 jgi|Araly1|474056|fgenesh2_kg.1__4010__AT1G49140.1
Length=461
Score = 388 bits (210), Expect = 2e-107
Identities = 296/337 (88%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 42 ATGGGGAGAAAGAAGGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGCTTTGATCCG 101
|||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 17 ATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCCCGATGGATTCGATCCT 76
Query 102 GAAAATCCATACAAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAG 161
|| ||||| |||||||||||||| |||||||| || |||||||| || || ||||| |||
Sbjct 77 GAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGAACATATTGTTCGTGAG 136
Query 162 AAATGGATCCAAATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGC 221
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 137 AAGTGGATCCAAATCGAGAAGGCTAAGATCTTGCGCGAGAAGGTCAAATGGTGTTACCGC 196
Query 222 GTCGAAGGAGTCAATCACTATCAGAAATGTCGTCATCTTGTTCAGCAGTATCTCGATTCC 281
|||||||| || || || || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 197 GTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCAGCAGTATCTCGACGCC 256
Query 282 ACTCGCGGCGTCGGTTGGGG-AAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACC 340
|||||||||||||||||||| |||| | || |||||||| || ||||||||||| || |
Sbjct 257 ACTCGCGGCGTCGGTTGGGGCAAAG-ACCACCGTCCTATCTCTCTCCACGGTCCTAAGCT 315
Query 341 GG-AGGCTGTTGAAG---CTGAATAA-TGTTGTGTGC 372
| || ||||||||| |||||||| ||||||||||
Sbjct 316 AGTAG-CTGTTGAAGAAGCTGAATAAATGTTGTGTGC 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21634218963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5