BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18420.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479344 jgi|Araly1|479344|fgenesh2_kg.3__2045__AT3G18420.1 1511 0.0
Ahg945045 jgi|Araly1|945045|scaffold_701274.1 337 1e-91
> Ahg479344 jgi|Araly1|479344|fgenesh2_kg.3__2045__AT3G18420.1
Length=1062
Score = 1511 bits (818), Expect = 0.0
Identities = 938/995 (94%), Gaps = 12/995 (1%)
Strand=Plus/Plus
Query 93 TTCTTCTTCATTGGTTTCTTCTTTCGTCGCCGTTAAAGCGACTCCGGTCACCGGACCTCT 152
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 33 TTCTTCTTCATTGATTTCTTCTTTCGTCGCCGTCAAAGCGACTCCGGTCACCGGACCTCT 92
Query 153 GATTCCCCGTCGCGATCTTCTTTCTATTCGTATCAGAG-CTAGCTCGAATCAGAATAGTT 211
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 93 GATTCCCCGTCGCGATCTTCTTTCTATTCGTATCA-AGGCTAGCTCGAATCAGAATGGTT 151
Query 212 CTGGTTATTGTTTTCCAGAAAAGTTTAAATCTTTTGCCAAATCAGCGATTCTCATCGGTG 271
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 152 CCGGTTATTGTTTTCCAGAAAAGTTTAAATCTTTTGCCAAATCAGCGATTCTCATTGGCG 211
Query 272 CTGCTGTTTCAATGACCGGAAAGTTTTCAACTTTACCGGTTAAAGCCGAGTCTCCGGTTA 331
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 212 CTGCTGTTTCAATGACCGGAAAGTTCTCAACTTTACCGGTGAAAGCGGAATCTCCGGTTA 271
Query 332 CGACTATCGAA-AAGACCTACGAGGAAGTGAAAGAAGAGAAACTGTCTGAGATCACGCCA 390
|||||| |||| || ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 272 CGACTACCGAAGAA-ACCTACGAGGAAGTGAAAGAAGAGAAACTCTCTGAGATCGCGCCA 330
Query 391 TTATCTGAGCTTTTGGATTCCACTCCTGAGGCCGTCGAGACGCTGAGATCACTCCTGCAG 450
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 331 TTATCTGAGCTTTTGGATTCCACTCCTGAGGCCGTCGAGACACTGAGATCACTCCTGCAA 390
Query 451 CAGAAGCTAGAGAAGGGAGAAGATGAAGAAGCTCTTAAGCTATTAGAGAGACTAGTAGCT 510
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 391 CAGAAGCTAGAGAAGGGAGAAGATGAAGAAGCTCTTAAGCTCTTAGAGAGACTAGTAACT 450
Query 511 GCACAACCAGAAGAAACAGAGTGGAAGTTCTTAATGGCGAGGCTGTTAGGCGAAATGGGT 570
|||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 451 GCACAACCTGATGAAACAGAGTGGAAGTTCTTAATGGCGAGGTTGTTGGGCGAAATGGGT 510
Query 571 CGTCCCGAAAACGCACGCCAGATGTTCGAGGAAATTCTCCAAAGAAACCCACTTTCGTTT 630
||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 511 CGTCCGGAAAACGCACGCCAGATGTTCGAGGAAATTCTCCAACGAAACCCGCTTTCGTTT 570
Query 631 GAGGCTTTATTCGAGAATGCATTGCTCATGGACAGGTCCGGGGAAGGAAATGCAGTGCTG 690
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 571 GAGGCTTTATTCGAGAACGCATTGCTCATGGACAGGTCCGGGGAAGGAGCTGCAGTGCTG 630
Query 691 CAGAGGCTAGAAGATGCTTTAGCTGTAGCTGAGGCTGAGTATTTGGTGAAGGAAGCGAGA 750
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 631 CAGAGGCTGGAAGATGCTTTAGCTGTAGCCGAGGCTGAGTATTTGGTGAAGGAAGCGAGA 690
Query 751 GATGTGAGACTGATCATTGCGCAGATACATTTCTTGCAGAAGAATGTGGATGAAGCATTG 810
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 691 GACGTGAGACTGATCATTGCGCAGATACATTTCTTGCAGAAGAACGTTGATGAAGCATTG 750
Query 811 AAGAGCTACGAGCAGCTGACGAAAGAGGATCCTAAGGATTTCAGACCGTATTTCTGTCGA 870
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 751 AAGAGCTACGAGCAGCTGACGAAAGAGGATCCAAAGGATTTCAGACCGTATTTCTGTCGA 810
Query 871 GGTATGATCTATAGCTTGCTTGACAAGAACGTTGAAGCTAAGGAACAGTTTGCTAAGTAC 930
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 811 GGTATGATTTATAGCTTGCTTGACAAGAACGTTGAAGCTAAGGAACAGTTTGCGAAGTAC 870
Query 931 AGAGAGCTCTCTCCAAAGAAATTTGAAGTAGAAGGGTACTTGAGGACTCCATTGTCTAAA 990
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 871 AGAGAGCTTTCTCCGAAGAAATTTGAAGTGGAAGGGTACTTGAGGACTCCATTGTCTAAA 930
Query 991 ATGAAGCTTTTTGGTGGTAGTGAGGAGAACTAAGTT-A---G-T-AC-GATAGCTTTAAA 1043
||||||||||||||||||||||| |||||||||||| | | | | ||||||| | ||
Sbjct 931 ATGAAGCTTTTTGGTGGTAGTGAAGAGAACTAAGTTTAATTGATTATTGATAGCTCTGAA 990
Query 1044 TCATATCAGAAGAATAAGACAC-TGGAAGATAATG 1077
|||||||||||||||||||||| || || || |||
Sbjct 991 TCATATCAGAAGAATAAGACACCTGAAAAATTATG 1025
> Ahg945045 jgi|Araly1|945045|scaffold_701274.1
Length=237
Score = 337 bits (182), Expect = 1e-91
Identities = 211/225 (94%), Gaps = 1/225 (0%)
Strand=Plus/Plus
Query 537 GTTCTTAATGGCGAGGCTGTTAGGCGAAATGGGTCGTCCCGAAAACGCACGCCAGATGTT 596
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 14 GTTCTTAATGGCGAGGCTGTTTGGCGAAATGGGTCGTCTGGAAAACGCACGCCAGATGTT 73
Query 597 CGAGGAAATTCTCCAAAGAAACCCACTTTCGTTTGAGGCTTTATTCGAGAATGCATTGCT 656
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 74 GGAGGAAATTCTCCAACGAAACCCACTTTCGTTTGAGGCTTTGTTCGAGAATGCATTGCT 133
Query 657 CATGGACAGGTCCGGGGAAGGAAATGCAGTGCTGCAGAGGCTAGAAGATGCTTTAGCTGT 716
|||||||||||| | ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 134 CATGGACAGGTCTGTGGAAGGAGCTGCAGTGCTGCAGAGGCTGGAAGATGCTTTAGCTGT 193
Query 717 AGCTGAGGCTGAGTATTTGGTGAAGGAAGCGAGAGATGTGAGACT 761
|| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 194 -GCCGAGGCTGAGTATTTGGTGAAGGAAGCGAGAGACGTGAGACT 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5