BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18430.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479345 jgi|Araly1|479345|fgenesh2_kg.3__2046__AT3G18430.1 1179 0.0
> Ahg479345 jgi|Araly1|479345|fgenesh2_kg.3__2046__AT3G18430.1
Length=775
Score = 1179 bits (638), Expect = 0.0
Identities = 735/781 (94%), Gaps = 9/781 (1%)
Strand=Plus/Plus
Query 2 AGGCAGATCTCCGGCGAAACTTTAGACTGAGATACGGAAGAATCAGATCAACGCATGCGA 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AGGCAGATCTCCGGCGAAACTTTAGACCGAGATACGGAAGAATCAGATCAACGCATGCGA 60
Query 62 CCAAGTAAATCAAAATCGGGTTGAAGAAGAAAGAGATAAGCTTTCACATCAATTTTTGAA 121
||||| |||||||| ||||| | |||||||||||||||||||| |||||| ||||||||
Sbjct 61 CCAAGAAAATCAAATTCGGG-CGGAGAAGAAAGAGATAAGCTTTTACATCAGTTTTTGAA 119
Query 122 GGCGCGAAATGGGGAATACTTCATCGATGCTGACTCAGTACGACATCGAAGAAGTTCAGA 181
|||| ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 120 GGCGTAAAATGGGAAACACTTCGTCGATGCTGACTCAATACGACATCGAAGAAGTTCAGA 179
Query 182 GTCATTGTCATGATCTATTTGAGCAGCAGGAGATTTTATCTCTGTATCAACGGTTTTGCC 241
| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 180 GCCATTGTCATGATCTATTTGAGCAGCAGGAGATTCTATCTCTGTATCAAAGGTTTTGCC 239
Query 242 AGTTAGATCGAAACGCAAAAGGATTTATATCTGCTGATGAGTTTCTCTCTGTGCCTGAGT 301
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 240 AGTTAGATCGAAACGCAAAGGGATTTATATCTTCTGATGAGTTTCTCTCTGTGCCTGAGT 299
Query 302 TTGCGATGAATCCACTCTCTCAGAGGCTGCTTAAGATGGTTGATGGTTTGAACTTTAAGG 361
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGCCATGAATCCACTATCACAGAGGCTGCTTAAGATGGTTGATGGTTTGAACTTTAAGG 359
Query 362 ATTTTGTTGCTTTCTTGTCTGCGTTTAGTGCCAAGGCTAGTCTAAGACAGAAAGTTCAAT 421
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 360 ATTTTGTGGCTTTCTTGTCTGCATTTAGTGCCAAGGCTAGTCTAAGACAGAAAGTTCAGT 419
Query 422 TGATCTTTAAAGTCTATGATTCGGACTGCAACGGGAAGGTCTCTTTTAAAGATATCATGG 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 TGATCTTTAAAGTCTATGATTCGGACTGCAACGGGAAGGTCTCCTTTAAAGATATCATGG 479
Query 482 AAGTGTTGCGTGACTTATCGGGATCATTCATGTCTGATGAGCAAAGAGAGCAAGTACTGA 541
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGTGTTGCGTGACTTATCCGGATCATTCATGTCTGATGAGCAAAGAGAGCAAGTACTGA 539
Query 542 GCCAGGTTTTGAAGGAATCGGGCTACACGAGTGACTCATTCTTAACTCTGGAGGATTTCA 601
||||||| |||||||||||||||||||| || ||||| |||||||| || ||||||||||
Sbjct 540 GCCAGGTGTTGAAGGAATCGGGCTACACAAGCGACTCTTTCTTAACACTAGAGGATTTCA 599
Query 602 TAAAGATCTTTGGGAGTAGTAGACCGGAGATGGACGTTGAAATTCCTGTGGATTAGACTT 661
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 600 TAAAGATCTTTGGGAGTAGTAGACCGGAGATGGACGTTGAAATCCCTGTGGATTAGGGTT 659
Query 662 TATGAT-CATATATCATCAAACACAACACTCAAATCTCATCTTGTATTTTGTCCACACTG 720
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 -ATG-TGCATAT--CATCAAACACAACACTCAAATCTCATCTTGTATTTTGTCCACACTG 715
Query 721 TTTCTAGAATAATCCTTGTTAATTGATCACAT--CATTGCAGGCTTTTTCAGCACTTGTT 778
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 716 TTACTAGAATAATCCTTGTTAATTGATCACACAACATTGCAGGCTTTTTCAGCACTT-TT 774
Query 779 A 779
|
Sbjct 775 A 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5