BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18440.1
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929724 jgi|Araly1|929724|scaffold_302181.1 2878 0.0
> Ahg929724 jgi|Araly1|929724|scaffold_302181.1
Length=1837
Score = 2878 bits (1558), Expect = 0.0
Identities = 1750/1843 (95%), Gaps = 11/1843 (1%)
Strand=Plus/Plus
Query 46 TCTTTGAGAAT-C-CGTCTAGTAATGGCGGCGAAGCAAGGTTCCTTCAGGCATG-GAATA 102
||| ||||||| | |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 TCTCTGAGAATCCGCGTCTAGTAATGGCGGCGAAGCAAGGTTCCTTCAGGCATGTG-ATA 59
Query 103 CTCGAGAAACGGGAGAGGCTTCTCTCCAATAATGGTTTCTCCGATTTCAGATTCACCGAC 162
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCGAGAAACGTGAAAGGCTTCTTTCCAATAATGGTTTCTCCGATTTCAGATTCACCGAC 119
Query 163 ATCGAATCTAACGATCTACTCGAAAACGAAAACTGTGGACGAAGAACACGGTTATGTTGC 222
|||||||| ||||||||||||||||||||||||| | | |||||||| |||||||||||
Sbjct 120 ATCGAATCGAACGATCTACTCGAAAACGAAAACTAT-G--GAAGAACAAGGTTATGTTGC 176
Query 223 TGTTGTTCGTGTGGTAATCTATCTGAGAAAATATCTGGAGTCTACGACGATGCTAAAGAT 282
||||| |||||||| |||||||| |||||||| || ||||| ||| | ||||||||||||
Sbjct 177 TGTTGCTCGTGTGGAAATCTATCAGAGAAAATCTCCGGAGTGTACCAAGATGCTAAAGAT 236
Query 283 GTAGCGAGGAAAGCTTGGGAGATGGGAGTATCTGATCCGAGAAAGATCGTCTTCTCCGCT 342
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTAGCGAGGAAAGCTTGGGATATGGGAGTATCTGATCCGAGAAAGATCGTCTTCTCCGCG 296
Query 343 AAGATTGGTCTTGCTCTGACGATTGTTGCGCTTTTGATTTTTTATCAGGAACCTAATCCG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAGATTGGTCTTGCTCTGACGATTGTTGCGCTTTTGATTTTTTATCAGGAACCTAATCCG 356
Query 403 GATCTTAGTCGATACTCTGTTTGGGCTATTCTTACTGTCGTCGTCGTCTTCGAATTCACC 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GATCTTAGTCGATACTCTGTTTGGGCTATTCTTACTGTCGTCGTCGTCTTCGAATTCACG 416
Query 463 ATCGGAGCAACTCTAAGCAAAGGGTTTAATAGAGCGCTTGGGACATTATCAGCTGGAGGT 522
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 ATCGGAGCAACTCTAAGCAAAGGGTTTAATCGAGCGCTTGGGACATTATCAGCTGGAGGT 476
Query 523 CTTGCTCTTGGAATGGCTGAGCTTTCCACTTTATTCGGTGACTGGGAAGAGATCTTCTGC 582
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 477 CTTGCTCTTGGAATGGCTGAGCTTTCGACACTATTCGGTGACTGGGAAGAGCTCTTCTGC 536
Query 583 ACTCTTAGTATCTTCTGCATTGGGTTTCTTGCAACTTTCATGAAACTATACCCGTCGATG 642
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 537 ACTCTTAGTATCTTCTGCATTGGGTTTCTCGCAACTTTCATGAAATTATACCCGTCGATG 596
Query 643 AAAGCTTATGAATACGGGTTCCGGGTTTTCTTGCTTACGTATTGCTACATTCTGATTTCT 702
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 597 AAAGCTTATGAATACGGGTTCAGGGTTTTCTTGCTTACGTATTGCTATATTCTGATTTCT 656
Query 703 GGGTTCAGAACTGGGCAGTTTATAGAAGTGGCTATCTCTCGGTTTCTGCTTATAGCTCTT 762
|||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||
Sbjct 657 GGGTTCAGAACTGGGCAGTTCATACAAGTGGCTATTTCCCGGTTTCTGCTTATAGCTCTT 716
Query 763 GGTGCTGGTGTTAGTTTAGGTGTTAATATGTTTATCTATCCTATATGGGCTGGAGAGGAT 822
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 717 GGTGCTGGTGTTAGTTTAGGTGTCAATATGTTTATTTATCCTATATGGGCTGGAGAGGAT 776
Query 823 CTTCATAACCTTGTCGTGAAGAATTTTATGAATGTTGCGACTTCCCTTGAAGGTTGTGTG 882
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CTTCATAACCTTGTCGTCAAGAATTTTATGAATGTTGCGACTTCCCTTGAAGGTTGTGTG 836
Query 883 AATGGATATCTCCGCTGTCTTGAATACGAGAGAATCCCATCCAAAATCCTCACGTACCAA 942
|| | ||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 837 AACGAATACCTCCGCTGTGTCGAATACGAGAGAATCCCATCCAAAATCCTCACATACCAA 896
Query 943 GCTTCAGAGGATCCTGTTTACAAGGGTTATAGATCAGCTGTTGAGTCAACCAGCCAAGAA 1002
|| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 897 GCCTCAGAGGATCCTGTTTACAAGGGTTACAGATCAGCGGTTGAATCAACCAGCCAAGAA 956
Query 1003 GAGTCTCTGATGAGTTTCGCAATATGGGAGCCACCACATGGACCATACAAGTCATTTAAC 1062
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 957 GAGTCTCTGATGAGTTTCGCAATATGGGAGCCGCCTCATGGACGATACAAGTCATTTAAC 1016
Query 1063 TACCCATGGAAGAACTATGTCAAGCTCAGCGGCGCTCTCAAGCATTGTGCATTCACTGTC 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TACCCATGGAAGAACTATGTCAAGCTCAGCGGCGCTCTCAAGCATTGTGCATTCACTGTC 1076
Query 1123 ATGGCATTGCACGGCTGCATTCTCTCAGAAATCCAGGCACCAGAGGAACGGAGACAAGTT 1182
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 ATGGCATTGCACGGCTGCATTCTCTCAGAAATCCAGGCACCAAAGGAACGGAGACAAGTT 1136
Query 1183 TTTCGGCAAGAACTTCAGAGAGTGGGCGTAGAAGGAGCTAAATTGTTAAGAGAGCTCGGT 1242
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1137 TTTCGGCAAGAACTTCAGAGAGTGGGCGTAGAAGGAGCCAAATTGTTACGAGAGCTCGGT 1196
Query 1243 GAAAAGGTGAAGAAGATGGAGAAGCTAGGACCAGTCGACCTTCTCTTTGAAGTACACCTA 1302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1197 GAAAAGGTGAAGAAGATGGAGAAGCTAGGACCTGTCGACCTTCTCTTTGAAGTACACCTA 1256
Query 1303 GCTGCTGAAGAATTACAGCACAAGATCGACAAGAAATCTTACCTTCTTGTCAATTCCGAA 1362
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCTGCCGAAGAATTACAGGACAAGATCGACAAGAAATCTTACCTTCTTGTCAATTCCGAA 1316
Query 1363 TGCTGGGAGATCGGAAACCGAGCCACCAAGGAATCAGAGCCTCAAGAACTGCTCTCCCTC 1422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 TGCTGGGAGATCGGAAACCGAGCCATAAAGGAATCAGAGCCTCAAGAACTGCTCTCCCTA 1376
Query 1423 GAAGATTCAGATCCACCAGAAAACCACGCGCCTCCAATCTACGCCTTCAAATCCCTAAGC 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1377 GAAGATTCAGATCCACCAGAAAACCACGCGCCTCCAATCTACGCCTTCAAATCTCTAAGC 1436
Query 1483 GAGGCAGTTCTAGAGATACCACCAAGCTGGGGCGAGAAGAATCACCGTGAAGC-GTTGAA 1541
|||||||||||||||||||| || |||||||| ||||||||||| ||| | || ||||||
Sbjct 1437 GAGGCAGTTCTAGAGATACCGCCGAGCTGGGGAGAGAAGAATCATCGTCA-GCCGTTGAA 1495
Query 1542 CCATAGACCTACTTTCTCAAAACAGGTGTCATGGCCTGCACGGCTTGTACTTCCGCCGCA 1601
||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1496 CCATAGACCTACTCTCTCAAAACAGGTATCATGGCCTGCACGGCTTGTGCTTCCGCCGCA 1555
Query 1602 T-CTGGAGACGACTAACGGAGCTTCACCGTTGGTGGAGACAACAAAGACTTATGAAAGCG 1660
| | |||||| || ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1556 TTC-GGAGACAACGAACGGAGCTTCACCGTTGGTGGATACGACAAAGACTTATGAAAGCG 1614
Query 1661 CGAGTGCATTGTCTCTCGCGACGTTCGCGTCTCTCCTCATTGAGTTCGTTGCTCGGTTGC 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CGAGTGCATTGTCTCTCGCGACGTTCGCGTCTCTCCTCATTGAGTTCGTTGCTCGGTTGC 1674
Query 1721 AGAACGTGGTCGACGCGTTCAAGGAGTTAAGCCAGAAAGCGAATTTCAAGGAGCCGGAGA 1780
|||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1675 AGAACGTGGTCGACGCATTCGAGGAGTTGAGCCAGAAGGCGAATTTCAAGGAGCCCGAGA 1734
Query 1781 TTGTTACAACGGGGACTGATGTTGAATTCTCTGGTGAAAGAGTTGGACTTGGCCAGAAGA 1840
||||||| |||| |||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1735 TTGTTACGACGGCGACTGATGTTGAATTCTCGGGCGAAAGAGTCGGACTTGGCCAGAAGA 1794
Query 1841 TTCGTAGGTGTTTTGGGATGTAAGGTTTTTGTTTTTGCATCGG 1883
| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1795 TCCGTGGGTGTTTTGGTATGTAAGGTTTTTGTTTTTGCATCGG 1837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5