BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18450.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479347 jgi|Araly1|479347|fgenesh2_kg.3__2048__AT3G18450.1 1075 0.0
Ahg341983 jgi|Araly1|341983|fgenesh1_pg.C_scaffold_3001746 326 2e-88
> Ahg479347 jgi|Araly1|479347|fgenesh2_kg.3__2048__AT3G18450.1
Length=854
Score = 1075 bits (582), Expect = 0.0
Identities = 774/862 (90%), Gaps = 32/862 (4%)
Strand=Plus/Plus
Query 1 CTATAATGCTTTCAAAAAATTAGACGATAAGAGATTTGTTATTAAAAG-aaaaaa-aGAG 58
|||||||||||||| ||||||| ||||||||||| ||||||||| ||| |||||| ||||
Sbjct 1 CTATAATGCTTTCACAAAATTAAACGATAAGAGAGTTGTTATTATAAGAAAAAAAGAGAG 60
Query 59 AAG-AAACCT-TTTTCGTTGCCGAACTCTAGCGGGGTAGATACTATGGGTCGACCAGTTG 116
||| ||| || |||| |||| | ||||||||| || || | |||||||||||||||| ||
Sbjct 61 AAGAAAATCTGTTTT-GTTGGCAAACTCTAGCCGGTTAAAGACTATGGGTCGACCAGATG 119
Query 117 GCCAAACGAATCAGGCACAACCTTCGGTTCAACATACGGCTAGCCCGAGCAACAAGGT-- 174
|||||| |||||||| | |||| ||||||||||||||||||| |||| |||||||||
Sbjct 120 GCCAAAAGAATCAGG--C-ACCTCCGGTTCAACATACGGCTAGTCCGAACAACAAGGTAC 176
Query 175 A-TCCCATAACGGTGGAATTGGTAAGCCGGCAAACATACCAACGGGCATACCGGTCAATT 233
| ||||||||||||| | |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 177 ATTCCCATAACGGTGCACCTGGTAAGCCGACAAACATACCAACGGGCATACGGGTCAATT 236
Query 234 ACCAACAAACACAAAATCAG-TGGAGTTCTCAACTTTTCGATTGCATGAACGACAGTGAA 292
|||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||
Sbjct 237 ACCAACAAACACAAAATC-GCTGGAGTTCTGAACTTTTCGATTGCATGAACGATAGTGAA 295
Query 293 AATGCCGTGATCACATTGATAGCTCCATGCGTCACGTTCGGACAGATTGCGGAGATCGTT 352
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 296 AATGCCGTGATCACATTGATCGCTCCATGCGTCACGTTCGGACAGATTGCGGAGGTTGTT 355
Query 353 GACGAAGGCGCGACGCCTTGTGCGACAGCTGGGTTGTTGTACGGAGC-ACTATTTTTTAC 411
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 356 GACGAAGGCGCGACGCCTTGTGCGACAGCTGGGTTGTTGTACGGAGCGA-TATTTTTTTC 414
Query 412 CGGGGCAAGTTTTGTGTATTCATACATGTTCAGGGCCAGGATACGAAAGAAGT-TCGGGT 470
||||||| |||| ||||||||||||||||||||||||| ||||||||| || | | ||||
Sbjct 415 CGGGGCATGTTTCGTGTATTCATACATGTTCAGGGCCAAGATACGAAACAAATAT-GGGT 473
Query 471 TACCGGATGCTCCGGCTCCCGATTGGATCACTCACTTAGTCTGTATGCCGTTTGCTCTTT 530
|||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 474 TACCAGATGCTCCGGCTCCGGATTGGATCACTCACTTAGTCTGTATGCAGTGTGCTCTTT 533
Query 531 GTCAAGAGTATCGTGAGCTCAAGCACCATGGTTTTGACCCCATTCTTGGGTGGGCTGGGA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTCAAGAGTATCGTGAGCTCAAGCACCATGGTTTTGACCCCATTCTTGGGTGGGCTGGGA 593
Query 591 ATGTTCAACAAGCACAGCAGCAAGAGATGATGACCCCTCCAACAGGTCAACGAATGATGG 650
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 594 ATGTTCAACAAGCACAGCAGCAAGAGATGATGACCCCTCCAACAGGTCAACGGATGATGG 653
Query 651 GTTGACTCATAAActtttgtt-t---gttcaca-ata-ttttttc-tgtcttttatttct 703
||||||| |||| |||| ||| | ||| ||| || ||||||| |||||||||||| |
Sbjct 654 GTTGACTAATAACCTTTGGTTATATTGTTGACATATTCTTTTTTCCTGTCTTTTATTT-T 712
Query 704 ttgttactttctatatttttcttgGCCAAAGAGAAAA-T----GTAAGAGAGTAATTTCA 758
| ||||||||||||||||||| ||| | |||| |||| | ||||| ||||| |||||
Sbjct 713 TCGTTACTTTCTATATTTTTCATGGTCGAAGATAAAAATAAATGTAAGCGAGTAGTTTCA 772
Query 759 TGTTCGTGGATGAACAAAACATG--TGTGAATTTCACGTAATTTCTTCCTATTTACTACA 816
||||||||||||||| ||||| | ||||||||||||||||||||||||||||| | | |
Sbjct 773 TGTTCGTGGATGAACGAAACAGGAGTGTGAATTTCACGTAATTTCTTCCTATTTCCGATA 832
Query 817 CATAAATAAATTTCTTCAAGCT 838
||||| |||||||||||||||
Sbjct 833 TATAAACAAATTTCTTCAAGCT 854
> Ahg341983 jgi|Araly1|341983|fgenesh1_pg.C_scaffold_3001746
Length=399
Score = 326 bits (176), Expect = 2e-88
Identities = 336/409 (82%), Gaps = 27/409 (7%)
Strand=Plus/Plus
Query 101 ATGGGTCGACCAGTTGGCCAAACGAATCAGGCAC-A--ACCTTCGGTTCAA-CATACGGC 156
||||||||||||| ||| || ||||| | |||| | |||| |||||||| || ||||
Sbjct 1 ATGGGTCGACCAGGTGGACAGCCGAATGAAGCACAACCACCTCCGGTTCAACCA-ACGGT 59
Query 157 TAGCCCGAGCAA-CAAGG-TA-TCCCATAACGGTGGAATTGGTAAGCC-GGCAAACATAC 212
|| || || ||| || || | ||||| ||||||| ||||||| | || ||||||||||
Sbjct 60 TAACCGGAACAACCAGGGAGATTCCCAAAACGGTGCAATTGGTCA-CCAAGCAAACATAC 118
Query 213 CAACGGGCATACCGGTCAATTACCAACAAACACAAAATCAG-TGGAGTTCTCAA-CTTTT 270
||||||||||||| |||| || | ||||| ||||||| | ||||||||| || |||||
Sbjct 119 GAACGGGCATACCGTTCAA-TA--ACCAAACGCAAAATC-GCTGGAGTTCT-AATCTTTT 173
Query 271 CGATTGCATGAACGACAGTGAAAATGCCGTGATCACATTGAT-AGCTCCATGCGTCACGT 329
|||||||||||||||||||||||||||||||||||| | | | |||||||||||| ||||
Sbjct 174 CGATTGCATGAACGACAGTGAAAATGCCGTGATCACCT-GTTTAGCTCCATGCGTGACGT 232
Query 330 TCGGACAGATTGCGGAGATCGTTGACGAAGGCGCGACGCCTTGTGCGACAGCTGGGTTGT 389
| ||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 233 TGGGACAGATTGCTGAGATCGTTGACGAAGGCGCTACGACTTGTGCGACAGGTGGGTTGT 292
Query 390 TGTACGGAGC-ACTATTTTTTACCGGGG--CAAGTTTTGTGTATTCATACATGTTCAGGG 446
|||| |||| | ||||||| | |||| | |||| || || |||| ||||||| |||
Sbjct 293 TGTATGGAGTGA-TATTTTTCATTGGGGTGCC-GTTT-GTCTACTCATGCATGTTCCGGG 349
Query 447 CCAGGATACGAAAGAAGT-TCGGGTTACCGGATGCTCCGGCTCCCGATT 494
||| || |||| || | | |||||||||||||||||||| |||||||
Sbjct 350 CCAAAATGCGAACCAAATAT-GGGTTACCGGATGCTCCGGCCCCCGATT 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5