BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G18470.1

Length=704
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479349 jgi|Araly1|479349|fgenesh2_kg.3__2050__AT3G18470.1         717    0.0  


> Ahg479349 jgi|Araly1|479349|fgenesh2_kg.3__2050__AT3G18470.1
Length=575

 Score =  717 bits (388),  Expect = 0.0
 Identities = 458/492 (93%), Gaps = 4/492 (1%)
 Strand=Plus/Plus

Query  115  CTACTTTACAATGGAAAAGCAATGGACTTCTGGTCTTTTCAGCTGCATGGAAGACAGTGA  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  25   CTACTTTACAATGGAAAAGCAATGGACTTCTGGTCTTTTCAGCTGCATGGAAGACAGCGA  84

Query  175  AACTGCTTGCCTCACATGTTTCTGCCCATGCGTCACTTTCGGACGGATCGCGGACATTTC  234
            || |||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
Sbjct  85   AAATGCTTGCCTCACATGTTTCTGCCCGTGCGTCACTTTCGGACGGATCGCGAATATTGC  144

Query  235  CGACGAAGGAAGGACCGGTTGTGGGAGATGTGGGGTATTTTACGGGCTAATATGTTGTGT  294
            ||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||
Sbjct  145  CGATGAAGGAAGGACAGGTTGTGGGAGTTGTGGGGTTTTTTACGGGCTGATATGTTTTGT  204

Query  295  GGTCGGCTTACCTTGCTTGTTCTCATGCACTTACCGGACCAAGATCCGAAGCAAATTCGG  354
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  205  GGTCGGCTTGCCTTGCTTGTTCTCATGTACTTACCGGACCAAGATCCGAAGCAAATTTGG  264

Query  355  GTTACCGGAGTCTCCAACTTCGGATTGCGTCACTCACTTCTTTTGTGAATGTTGTGCTCT  414
            |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct  265  GTTACCGGAGTCTCCAGCTTCGGATTGCCTCACTCACTGCTTTTGTGAATGTTGTGCTCT  324

Query  415  TTGCCAAGAACACCGTGAACTCAAAACCCGTGGTCTTGACCCCTCTATTGGGTGGAGTGG  474
            |||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct  325  TTGCCAAGAATACCGTGAACTCAAAACCCGTGGTCTTGACCCCTCTCTTGGATGGAATGG  384

Query  475  AAATATGCAACGGACGATGGCTCCTCCTATGAGTCAGCAGATGATGGGTTGATT-AAGAA  533
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  385  AAACATGCAACGGACGATGGCTCCTCCTATGAGTCAGCAGATGATGGGTTGATTTAA-AA  443

Query  534  GATTTCTGATTTGCAATATGATTTGAATTAAA-TAAGTGGTTCACGAAAACAGCACTTTT  592
            |||   |||||| ||||||||||| ||||||| || | ||||||| ||||||||||||||
Sbjct  444  GATAAATGATTTTCAATATGATTTAAATTAAACTAGG-GGTTCACAAAAACAGCACTTTT  502

Query  593  AAGTGTAGtttt  604
            ||||||||||||
Sbjct  503  AAGTGTAGTTTT  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25885460643


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5