BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18480.1
Length=2450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318610 jgi|Araly1|318610|fgenesh1_pm.C_scaffold_3001626 1766 0.0
> Ahg318610 jgi|Araly1|318610|fgenesh1_pm.C_scaffold_3001626
Length=2118
Score = 1766 bits (956), Expect = 0.0
Identities = 994/1013 (98%), Gaps = 0/1013 (0%)
Strand=Plus/Plus
Query 1246 AGGATACTATCATTGAAGAGATGAAGAAAGAGCTTCAAGAAAGACCATCAGCAAAATTAG 1305
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1106 AGGATACTGTCATTGAAGAGATGAAGAAAGAGCTTCAAGAACGACCATCAGCAAAATTAG 1165
Query 1306 TTGATGATTTGCGCAAAAAAGTGAAAATTCTGCAGGCTGTAGGTTACAATTCAATTGAGG 1365
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TTGATGATCTGCGCAAAAAAGTGAAAATTCTGCAGGCTGTAGGTTACAATTCAATTGAGG 1225
Query 1366 CTGAAGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTC 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 CTGAAGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTC 1285
Query 1426 TTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGGTTCAACTTTCTGAGA 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGGTTCAACTTTCTGAGA 1345
Query 1486 AAGCTTCCTTGCTTGAGAAGGCTGAAGCCAAGGGAGAAGAACTGACAGCTAAGGTTAATG 1545
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 AAACTTCCTTGCTTGAGAAGGCTGAAGCCAAGGGAGAAGAACTGACAGCTAAGGTTAATG 1405
Query 1546 AACAACAAAGACTGATACAAAAGTTGGAGGATGATATTTTGAAGGGTTACGGTTCAAAAG 1605
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1406 AACAACAAAGACTGATACAAAAGTTGGAGGATGATATTTTGAAGGGTTACAGTTCAAAAG 1465
Query 1606 AGCGAAAAGGTGCTCTATTTGATGAATGGGAGTTCTCAGAAGCAGGTGTGGCTGAGCAGT 1665
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1466 AGCGAAAAGGTGCTCTATTTGATGAGTGGGAGTTCTCAGAAGCAGGTGTGGCTGAGCAGT 1525
Query 1666 CTGAGCCTATGGATCAGAAACATGTTCCATCAGAGCAAGATCAAAGCTCAATGCTAAAAG 1725
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1526 CTGAGCCTATGGATCAGAAACATGTTCCATCAGATCAAGATCAAAGCTCAATGCTAAAAG 1585
Query 1726 TTATCTGCAGCCAAAGAGATCGGTTCCGAGCACGATTACGGGAAACAGAAGAGGAAATAA 1785
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TCATCTGCAGCCAAAGAGATCGGTTCCGAGCACGATTACGGGAAACAGAAGAGGAAATAA 1645
Query 1786 GGCGATTAAAAGAGAAGATAGGTTTTCTCACAGACGAATTGGAGAAGACCAAAGCAGACA 1845
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1646 GGCGATTAAAAGAGAAGATAGGATTTCTCACAGACGAATTGGAGAAGACCAAAGCTGACA 1705
Query 1846 ACGTCAAACTCTATGGGAAAATCCGTTATGTCCAAGACTATAACCATGATAAAGTTGTTT 1905
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1706 ACGTCAAACTCTATGGGAAAATCCGTTATGTCCAAGACTATAACCACGATAAAGTTGTTT 1765
Query 1906 CCCGAGGATCGAAAAAGTATGTGGAAGATCTTGAAAGTGGATTCAGCTCGGATGTCGAAT 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 CCCGAGGATCGAAAAAGTATGTGGAAGATCTTGAAAGTGGATTCAGCTCGGATGTCGAAT 1825
Query 1966 CAAAATACAAGAAAATTTACGAAGATGACATCAACCCTTTTGCAGCATTCTCGAAAAAGG 2025
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1826 CAAAATACAAGAAAATTTACGAAGATGACATTAACCCTTTTGCAGCATTCTCAAAAAAGG 1885
Query 2026 AAAGAGAGCAACGGATCAAAGATTTGGGAATCAGAGATCGGATTACGCTAAGCAGTGGGC 2085
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1886 AAAGAGAGCAACGGATCAAAGATTTGGGAATCAGAGATCGGATTACGCTAAGCAGTGGTC 1945
Query 2086 GGTTCCTTCTAGGAAACAAATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGC 2145
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 GCTTCCTTCTAGGAAACAAATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGC 2005
Query 2146 ACGTCCTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGTTATCTCAGCCATGGAG 2205
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2006 ACGTACTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGCTATCTCAGCCATGGAG 2065
Query 2206 CAGAGGAGACTCTAATGACAGAAGCAACCACAAACCTTCCTCACGGTCTTTAA 2258
||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2066 CAGAGGAGACTCTGATGACAGAAGCAACCACAAACCTCCCTCACGGTCTTTAA 2118
Score = 1753 bits (949), Expect = 0.0
Identities = 1023/1059 (97%), Gaps = 3/1059 (0%)
Strand=Plus/Plus
Query 189 ATGGAGGTTTCGCAAGATGGATCGGAAAGAGATAAAActcctcctccttcctcttcttct 248
|||||||||| ||||||||||||||| |||||||||||||||||||||| | | |||||
Sbjct 1 ATGGAGGTTTTGCAAGATGGATCGGAGAGAGATAAAACTCCTCCTCCTT-C-C-TCTTCG 57
Query 249 tcttcttcctctcccattcctGTCGTCACCAATTTCTGGAAAGAATTTGATTTGGAGAAG 308
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 58 TCTTCTTCGTCTCCCATTCCTGTCGTCACCAATTTTTGGAAAGAATTTGATTTGGAGAAG 117
Query 309 GAGAAAAGCCTGCTTGACGAGCAAGGGCTTAGAATAGCTGAAAATCAAGAAAACAGCCAA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAGAAAAGCCTGCTTGACGAGCAAGGGCTTAGAATAGCTGAAAATCAAGAAAACAGCCAA 177
Query 369 AAGAATCGCCGAAAGCTTGCAGAGAGCACACGAGACTTCAAGAAAGCTTCGCCTGAGAAC 428
|||||||| || ||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 178 AAGAATCGGCGGAAGCTTGCAGAGAGCACTCGAGACTTCAAGAAAGCTTCCCCTGAGGAC 237
Query 429 AAACTTAGTATGTTTAATTCCCTCCTCAAGGGATATCAAGAAGAAGTAGATAATATTACC 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAACTTAGTATGTTTAATTCCCTCCTCAAGGGATATCAAGAAGAAGTAGATAATATTACC 297
Query 489 AAGAGGGCCAAGTTTGGGGAGAATGCTTTCCTAAATATCTATCAGAAACTCTATGAAGCA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGAGGGCCAAGTTTGGGGAGAATGCTTTCCTAAATATCTATCAGAAACTCTATGAAGCA 357
Query 549 CCTGATCCGTTTCCTGCTCTTGCTTCTATTGCTGAGCAAGATCGTAAATTATCTGAAGTG 608
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCAGATCCATTTCCTGCTCTTGCTTCTATTGCTGAGCAAGATCGTAAATTATCTGAAGTG 417
Query 609 GAATCTGAAAATCGAAAGATGAAAGTTGAACTTGAGGAGTTTAGGACAGAAGCGACTCAT 668
|||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 418 GAATCTGAGAATCGAAAAATGAAAGTTGAACTTGAGGAATTTAGGACAGAAGCCACTCAT 477
Query 669 CTTAAAAATCAGCAGGCCACAATAAGAAGGCTTGAAGAACGGAACCGCCAGCTTGAGCAA 728
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 CTGAAAAATCAGCAGGCCACAATAAGAAGGCTAGAAGAACGGAACCGCCAGCTTGAGCAA 537
Query 729 CAGATGGAAGAAAAAATCAAAGAAGTTGTTGAGATCAAGCAACGAAATCTGGCTGAGGAA 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CAGATGGAAGAAAAAATCAAAGAAGTTGTTGAGATCAAGCAACGAAATCTGGCTGAGGAA 597
Query 789 AACCAGAAAACGATGGAGCTTTTAAAGGATAGGGAGCAAGCTTTGCAAGATCAGTTAAGG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AACCAGAAAACGATGGAGCTTTTAAAGGATAGGGAGCAAGCTTTGCAAGATCAGTTAAGG 657
Query 849 CAAGCAAAAGACAGCGTCTCCACTATGCAAAAATTGCATGAGTTAGCACAGAACCAACTT 908
||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 658 CAAGCGAAAGACAGCGTCTCCACTATGCAAAAATTGCATGAGCTAGCACAGAGCCAACTT 717
Query 909 TTTGAACTCCGTGCTCAATCAGACGAAGAGACCGCGGGGAAGCAATCTGAAGTTAGTCTA 968
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 718 TTTGAAATCCGTGCTCAATCAGATGAAGAGACCGCGGCGAAGCAATCTGAAGTTAGTCTA 777
Query 969 TTGATGGATGAAGTGGAGCGTGCTCAGACCCGACTCCTTACTCTTGAGAGGGAAAAGGGA 1028
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 778 TTGATGGATGAAGTGGAGCGTGCTCAAACCCGGCTCCTTACTCTTGAGAGGGAAAAGGGA 837
Query 1029 CATCTGCGTTCTCAGCTGCAAACAGCTAATGAAGATACTGATAACAAGAAAAGTGATAAT 1088
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CATCTGCGTTCTCAGTTGCAAACAGCTAATGAAGATACTGATAACAAGAAAAGTGATAAT 897
Query 1089 ATTGATTCGAATAGTATGCTGGAGAACTCGTTAACTGCAAAAGAGAAGATTATTTCGGAG 1148
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 898 GTTGATTCAAATAGTATGCTGGAGAACTCTTTAACTGCAAAAGAGAAGATTATTTCGGAG 957
Query 1149 CTTAATATGGAGATTCACAATGTTGAGACAGCTTTAGCTAATGAGCGAGAAAGTCATGTT 1208
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 CTTAATATGGAGATTCACAATGTTGAGACAGCTTTAGCAAATGAGCGAGAAAGTCATGTT 1017
Query 1209 GCCGAGATAAAGAAATTGAATTCTTTGCTCAATAAAAAG 1247
|| || |||||||||||||||||||||||||||||||||
Sbjct 1018 GCTGAAATAAAGAAATTGAATTCTTTGCTCAATAAAAAG 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92330753880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5